A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: NA2797  PDB ID: 4NOD 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
125C_BRU19:DA4_D0.349-0.0820.4922.062-7.5669.856
116C_DA8:DT15_D0.034-0.298-0.4380.673-9.8824.133
111C_DG3:DC20_D-0.108-0.2840.0810.613-6.488-3.628
112C_DG4:DC19_D0.201-0.1860.37916.602-8.6231.298
113C_DG5:DC18_D0.6030.0640.37623.5311.078-5.551
114C_DG6:DC17_D0.442-0.219-0.211-17.519-1.191-1.092
118C_DG10:DC13_D-0.1170.1340.671.932-13.4716.454
119C_DG12:DC11_D2.3950.8310.02-9.442-24.23626.068
120C_DG13:DC10_D0.2811.3850.539-18.564-19.70626.007
123C_DG17:DC6_D0.2140.2040.00219.79614.2574.164
124C_DG18:DC5_D1.3980.4-0.162-16.503-1.48-1.478
127C_DG21:DC2_D0.205-0.154-0.08-11.278-12.9771.693
128C_DG22:DC1_D1.9330.2070.074-11.912-6.401-1.724
19C_DT1:DA22_D-1.2490.248-0.015-8.633-14.14-4.017
110C_DT2:DA21_D-0.582-0.0330.402-11.823-8.047-9.778
115C_DT7:DA16_D-0.188-0.172-0.415-27.287-13.3345.662
117C_DT9:DA14_D0.1230.088-0.41812.126-12.938-2.665
121C_DT15:DA8_D0.2840.1630.248-31.129-9.8574.218
122C_DT16:DA7_D-1.2070.048-0.0016.76110.1693.914
126C_DT20:DA3_D-0.841-0.1820.1295.71-6.7867.574
15E_BRU19:DA4_F0.259-0.270.5543.431-8.5379.584
136E_DA8:DT15_F0.193-0.233-0.5741.279-12.0634.206
131E_DG3:DC20_F-0.177-0.446-0.0330.074-5.541-4.122
132E_DG4:DC19_F-0.022-0.2390.26416.873-8.5140.588
133E_DG5:DC18_F0.440.0590.422.5140.175-6.321
134E_DG6:DC17_F0.3420.008-0.485-19.556-3.092-2.082
138E_DG10:DC13_F-0.0510.0830.5162.163-13.6166.163
139E_DG12:DC11_F2.350.781-0.044-10.106-24.1826.01
140E_DG13:DC10_F0.2171.3650.416-19.162-19.0425.693
13E_DG17:DC6_F0.3160.135-0.05619.62914.9144.554
14E_DG18:DC5_F1.420.242-0.067-16.236-1.255-0.895
17E_DG21:DC2_F0.048-0.21-0.039-12.078-12.6482.09
18E_DG22:DC1_F1.780.320.096-13.11-6.448-1.173
129E_DT1:DA22_F-0.9560.081-0.085-6.721-15.296-4.488
130E_DT2:DA21_F-0.489-0.2020.297-12.634-10.581-10.137
135E_DT7:DA16_F-0.076-0.025-0.475-27.073-13.4985.257
137E_DT9:DA14_F0.2820.119-0.54711.918-13.161-2.137
11E_DT15:DA8_F0.340.2020.135-31.529-9.1944.31
12E_DT16:DA7_F-1.0970.059-0.0277.05711.4274.003
16E_DT20:DA3_F-0.925-0.3390.2726.221-6.0238.027
165I_BRU19:DA4_J0.202-0.330.4144.589-7.25310.131
156I_DA8:DT15_J0.121-0.131-0.5131.096-12.0454.484
151I_DG3:DC20_J-0.253-0.460.004-0.595-5.115-4.112
152I_DG4:DC19_J-0.147-0.2320.21713.941-6.9431.565
153I_DG5:DC18_J0.3920.0390.28720.6261.38-5.021
154I_DG6:DC17_J0.373-0.016-0.219-16.508-2.357-3.207
158I_DG10:DC13_J-0.0490.1420.4322.218-12.8825.92
159I_DG12:DC11_J2.4380.792-0.114-10.921-23.41725.972
160I_DG13:DC10_J0.3381.3530.358-18.803-18.81125.989
163I_DG17:DC6_J0.26-0.024-0.07119.98715.6554.888
164I_DG18:DC5_J1.3890.055-0.137-13.88-0.064-1.084
167I_DG21:DC2_J-0.063-0.142-0.197-12.164-10.8453.322
168I_DG22:DC1_J1.7670.358-0.046-11.746-3.468-1.236
149I_DT1:DA22_J-0.968-0.0170.018-6.602-13.901-5.035
150I_DT2:DA21_J-0.614-0.2680.442-11.181-6.552-12.283
155I_DT7:DA16_J-0.0930.028-0.458-27.306-13.9075.558
157I_DT9:DA14_J0.2590.172-0.57911.674-13.247-2.195
161I_DT15:DA8_J0.3420.0590.17-31.117-9.5574.031
162I_DT16:DA7_J-1.096-0.0830.036.98811.6234.292
166I_DT20:DA3_J-1.021-0.3650.2215.042-6.3748.276
145K_BRU19:DA4_L0.218-0.1630.4083.819-6.07610.345
176K_DA8:DT15_L0.132-0.257-0.4421.211-9.7344.059
171K_DG3:DC20_L-0.265-0.343-0.147-0.496-4.87-4.136
172K_DG4:DC19_L0.133-0.160.14613.907-7.6641.76
173K_DG5:DC18_L0.6670.0840.30521.7480.845-5.555
174K_DG6:DC17_L0.474-0.143-0.238-17.394-4.184-1.771
178K_DG10:DC13_L-0.0890.1350.5681.776-13.9216.337
179K_DG12:DC11_L2.4290.8360.01-9.876-22.40225.682
180K_DG13:DC10_L0.3341.3880.465-18.117-18.225.84
143K_DG17:DC6_L0.1570.072-0.05618.57314.8765.153
144K_DG18:DC5_L1.2680.255-0.212-16.582-2.557-1.176
147K_DG21:DC2_L0.165-0.074-0.141-11.355-9.422.618
148K_DG22:DC1_L1.9310.3060.141-11.228-2.992-1.379
169K_DT1:DA22_L-1.1570.113-0.179-6.909-13.861-4.56
170K_DT2:DA21_L-0.818-0.1180.179-9.647-5.201-12.522
175K_DT7:DA16_L-0.07-0.12-0.415-26.507-12.5095.416
177K_DT9:DA14_L0.1740.092-0.43311.737-11.818-2.516
141K_DT15:DA8_L0.3430.0830.259-31.457-9.5054.299
142K_DT16:DA7_L-1.185-0.0550.065.79510.6484.49
146K_DT20:DA3_L-0.942-0.260.0414.326-7.0088.037

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.