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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA2797
PDB ID:
4NOD
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
25
C_BRU19:DA4_D
0.349
-0.082
0.492
2.062
-7.566
9.856
1
16
C_DA8:DT15_D
0.034
-0.298
-0.438
0.673
-9.882
4.133
1
11
C_DG3:DC20_D
-0.108
-0.284
0.081
0.613
-6.488
-3.628
1
12
C_DG4:DC19_D
0.201
-0.186
0.379
16.602
-8.623
1.298
1
13
C_DG5:DC18_D
0.603
0.064
0.376
23.531
1.078
-5.551
1
14
C_DG6:DC17_D
0.442
-0.219
-0.211
-17.519
-1.191
-1.092
1
18
C_DG10:DC13_D
-0.117
0.134
0.67
1.932
-13.471
6.454
1
19
C_DG12:DC11_D
2.395
0.831
0.02
-9.442
-24.236
26.068
1
20
C_DG13:DC10_D
0.281
1.385
0.539
-18.564
-19.706
26.007
1
23
C_DG17:DC6_D
0.214
0.204
0.002
19.796
14.257
4.164
1
24
C_DG18:DC5_D
1.398
0.4
-0.162
-16.503
-1.48
-1.478
1
27
C_DG21:DC2_D
0.205
-0.154
-0.08
-11.278
-12.977
1.693
1
28
C_DG22:DC1_D
1.933
0.207
0.074
-11.912
-6.401
-1.724
1
9
C_DT1:DA22_D
-1.249
0.248
-0.015
-8.633
-14.14
-4.017
1
10
C_DT2:DA21_D
-0.582
-0.033
0.402
-11.823
-8.047
-9.778
1
15
C_DT7:DA16_D
-0.188
-0.172
-0.415
-27.287
-13.334
5.662
1
17
C_DT9:DA14_D
0.123
0.088
-0.418
12.126
-12.938
-2.665
1
21
C_DT15:DA8_D
0.284
0.163
0.248
-31.129
-9.857
4.218
1
22
C_DT16:DA7_D
-1.207
0.048
-0.001
6.761
10.169
3.914
1
26
C_DT20:DA3_D
-0.841
-0.182
0.129
5.71
-6.786
7.574
1
5
E_BRU19:DA4_F
0.259
-0.27
0.554
3.431
-8.537
9.584
1
36
E_DA8:DT15_F
0.193
-0.233
-0.574
1.279
-12.063
4.206
1
31
E_DG3:DC20_F
-0.177
-0.446
-0.033
0.074
-5.541
-4.122
1
32
E_DG4:DC19_F
-0.022
-0.239
0.264
16.873
-8.514
0.588
1
33
E_DG5:DC18_F
0.44
0.059
0.4
22.514
0.175
-6.321
1
34
E_DG6:DC17_F
0.342
0.008
-0.485
-19.556
-3.092
-2.082
1
38
E_DG10:DC13_F
-0.051
0.083
0.516
2.163
-13.616
6.163
1
39
E_DG12:DC11_F
2.35
0.781
-0.044
-10.106
-24.18
26.01
1
40
E_DG13:DC10_F
0.217
1.365
0.416
-19.162
-19.04
25.693
1
3
E_DG17:DC6_F
0.316
0.135
-0.056
19.629
14.914
4.554
1
4
E_DG18:DC5_F
1.42
0.242
-0.067
-16.236
-1.255
-0.895
1
7
E_DG21:DC2_F
0.048
-0.21
-0.039
-12.078
-12.648
2.09
1
8
E_DG22:DC1_F
1.78
0.32
0.096
-13.11
-6.448
-1.173
1
29
E_DT1:DA22_F
-0.956
0.081
-0.085
-6.721
-15.296
-4.488
1
30
E_DT2:DA21_F
-0.489
-0.202
0.297
-12.634
-10.581
-10.137
1
35
E_DT7:DA16_F
-0.076
-0.025
-0.475
-27.073
-13.498
5.257
1
37
E_DT9:DA14_F
0.282
0.119
-0.547
11.918
-13.161
-2.137
1
1
E_DT15:DA8_F
0.34
0.202
0.135
-31.529
-9.194
4.31
1
2
E_DT16:DA7_F
-1.097
0.059
-0.027
7.057
11.427
4.003
1
6
E_DT20:DA3_F
-0.925
-0.339
0.272
6.221
-6.023
8.027
1
65
I_BRU19:DA4_J
0.202
-0.33
0.414
4.589
-7.253
10.131
1
56
I_DA8:DT15_J
0.121
-0.131
-0.513
1.096
-12.045
4.484
1
51
I_DG3:DC20_J
-0.253
-0.46
0.004
-0.595
-5.115
-4.112
1
52
I_DG4:DC19_J
-0.147
-0.232
0.217
13.941
-6.943
1.565
1
53
I_DG5:DC18_J
0.392
0.039
0.287
20.626
1.38
-5.021
1
54
I_DG6:DC17_J
0.373
-0.016
-0.219
-16.508
-2.357
-3.207
1
58
I_DG10:DC13_J
-0.049
0.142
0.432
2.218
-12.882
5.92
1
59
I_DG12:DC11_J
2.438
0.792
-0.114
-10.921
-23.417
25.972
1
60
I_DG13:DC10_J
0.338
1.353
0.358
-18.803
-18.811
25.989
1
63
I_DG17:DC6_J
0.26
-0.024
-0.071
19.987
15.655
4.888
1
64
I_DG18:DC5_J
1.389
0.055
-0.137
-13.88
-0.064
-1.084
1
67
I_DG21:DC2_J
-0.063
-0.142
-0.197
-12.164
-10.845
3.322
1
68
I_DG22:DC1_J
1.767
0.358
-0.046
-11.746
-3.468
-1.236
1
49
I_DT1:DA22_J
-0.968
-0.017
0.018
-6.602
-13.901
-5.035
1
50
I_DT2:DA21_J
-0.614
-0.268
0.442
-11.181
-6.552
-12.283
1
55
I_DT7:DA16_J
-0.093
0.028
-0.458
-27.306
-13.907
5.558
1
57
I_DT9:DA14_J
0.259
0.172
-0.579
11.674
-13.247
-2.195
1
61
I_DT15:DA8_J
0.342
0.059
0.17
-31.117
-9.557
4.031
1
62
I_DT16:DA7_J
-1.096
-0.083
0.03
6.988
11.623
4.292
1
66
I_DT20:DA3_J
-1.021
-0.365
0.221
5.042
-6.374
8.276
1
45
K_BRU19:DA4_L
0.218
-0.163
0.408
3.819
-6.076
10.345
1
76
K_DA8:DT15_L
0.132
-0.257
-0.442
1.211
-9.734
4.059
1
71
K_DG3:DC20_L
-0.265
-0.343
-0.147
-0.496
-4.87
-4.136
1
72
K_DG4:DC19_L
0.133
-0.16
0.146
13.907
-7.664
1.76
1
73
K_DG5:DC18_L
0.667
0.084
0.305
21.748
0.845
-5.555
1
74
K_DG6:DC17_L
0.474
-0.143
-0.238
-17.394
-4.184
-1.771
1
78
K_DG10:DC13_L
-0.089
0.135
0.568
1.776
-13.921
6.337
1
79
K_DG12:DC11_L
2.429
0.836
0.01
-9.876
-22.402
25.682
1
80
K_DG13:DC10_L
0.334
1.388
0.465
-18.117
-18.2
25.84
1
43
K_DG17:DC6_L
0.157
0.072
-0.056
18.573
14.876
5.153
1
44
K_DG18:DC5_L
1.268
0.255
-0.212
-16.582
-2.557
-1.176
1
47
K_DG21:DC2_L
0.165
-0.074
-0.141
-11.355
-9.42
2.618
1
48
K_DG22:DC1_L
1.931
0.306
0.141
-11.228
-2.992
-1.379
1
69
K_DT1:DA22_L
-1.157
0.113
-0.179
-6.909
-13.861
-4.56
1
70
K_DT2:DA21_L
-0.818
-0.118
0.179
-9.647
-5.201
-12.522
1
75
K_DT7:DA16_L
-0.07
-0.12
-0.415
-26.507
-12.509
5.416
1
77
K_DT9:DA14_L
0.174
0.092
-0.433
11.737
-11.818
-2.516
1
41
K_DT15:DA8_L
0.343
0.083
0.259
-31.457
-9.505
4.299
1
42
K_DT16:DA7_L
-1.185
-0.055
0.06
5.795
10.648
4.49
1
46
K_DT20:DA3_L
-0.942
-0.26
0.041
4.326
-7.008
8.037
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.