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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA2797
PDB ID:
4NOD
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
24
CC_BRU19DT20:DA3DA4_DD
0.482
-1.102
3.095
2.56
3.58
24.009
-3.646
-0.398
2.936
8.514
-6.089
24.403
1
16
CC_DA8DT9:DA14DT15_DD
-0.428
0.32
3.019
0.671
7.197
26.307
-1.002
1.065
2.988
15.445
-1.441
27.265
1
11
CC_DG3DG4:DC19DC20_DD
0.073
1.446
3.087
-1.367
-5.134
38.455
2.75
-0.263
2.874
-7.75
2.064
38.806
1
12
CC_DG4DG5:DC18DC19_DD
0.3
0.526
3.218
1.582
4.852
29.577
0.019
-0.253
3.272
9.415
-3.07
30.005
1
13
CC_DG5DG6:DC17DC18_DD
-1.043
0.194
4.999
-0.61
46.745
34.964
-3.932
1.026
3.271
55.194
0.72
57.784
1
14
CC_DG6DT7:DA16DC17_DD
-1.473
0.123
3.578
5.923
43.064
4.01
-4.486
2.621
0.258
84.192
-11.579
43.645
1
18
CC_DG10DG12:DC11DC13_DD
0.423
-0.216
6.895
11.501
-1.45
71.734
-0.081
0.446
6.891
-1.229
-9.751
72.54
1
19
CC_DG12DG13:DC10DC11_DD
0.579
-0.317
2.822
6.774
17.005
32.671
-2.435
-0.132
2.442
27.689
-11.03
37.327
1
22
CC_DG17DG18:DC5DC6_DD
-0.177
1.085
5.465
5.301
47.805
22.951
-4.886
0.875
3.385
65.57
-7.27
52.998
1
23
CC_DG18BRU19:DA4DC5_DD
0.484
-0.389
3.087
-5.308
5.902
23.904
-2.478
-2.537
2.744
13.772
12.385
25.169
1
26
CC_DG21DG22:DC1DC2_DD
-1.847
0.334
3.36
-0.536
11.214
44.701
-0.581
2.314
3.367
14.475
0.692
46.019
1
27
CE_DG22DT1:DA22DC1_FD
-0.565
-1.055
3.103
0.251
-2.261
14.076
-2.23
2.503
3.22
-9.148
-1.015
14.257
1
9
CC_DT1DT2:DA21DA22_DD
-0.17
-0.388
3.418
-2.899
1.809
36.403
-0.879
-0.146
3.398
2.888
4.627
36.558
1
10
CC_DT2DG3:DC20DA21_DD
1.072
1.078
3.09
5.89
-0.743
41.75
1.572
-0.906
3.187
-1.036
-8.215
42.151
1
15
CC_DT7DA8:DT15DA16_DD
-0.912
2.044
2.927
-8.609
13.518
24.715
0.841
-0.232
3.658
28.12
17.908
29.388
1
17
CC_DT9DG10:DC13DA14_DD
0.841
2.163
3.569
-4.894
-0.798
43.962
2.953
-1.606
3.423
-1.061
6.513
44.227
1
20
CC_DT15DT16:DA7DA8_DD
-0.432
1.242
3.183
-0.741
25.306
13.586
-4.459
0.669
2.622
62.2
1.821
28.68
1
21
CC_DT16DG17:DC6DA7_DD
-0.147
1.123
3.318
-2.853
19.894
27.372
-1.718
-0.27
3.357
36.459
5.228
33.844
1
25
CC_DT20DG21:DC2DA3_DD
0.052
-0.143
3.585
1.531
3.571
44.183
-0.552
0.087
3.563
4.736
-2.031
44.345
1
5
EE_BRU19DT20:DA3DA4_FF
0.501
-1.1
3.129
1.703
2.856
24.516
-3.386
-0.682
3.01
6.687
-3.987
24.737
1
35
EE_DA8DT9:DA14DT15_FF
-0.423
0.325
3.007
0.841
7.825
26.033
-1.143
1.098
2.962
16.886
-1.814
27.177
1
30
EE_DG3DG4:DC19DC20_FF
0.036
1.494
3.068
-1.846
-4.426
38.203
2.768
-0.264
2.879
-6.73
2.807
38.492
1
31
EE_DG4DG5:DC18DC19_FF
0.251
0.55
3.237
-0.052
5.109
29.551
0.006
-0.497
3.283
9.923
0.1
29.98
1
32
EE_DG5DG6:DC17DC18_FF
-1.053
0.227
5.082
-0.014
45.721
34.307
-4.048
1.109
3.34
55.025
0.017
56.603
1
33
EE_DG6DT7:DA16DC17_FF
-1.403
0.147
3.509
4.628
43.75
4.332
-4.418
2.353
0.351
84.185
-8.906
44.197
1
37
EE_DG10DG12:DC11DC13_FF
0.406
-0.201
6.884
11.132
-1.637
71.867
-0.056
0.431
6.88
-1.386
-9.427
72.625
1
38
EE_DG12DG13:DC10DC11_FF
0.575
-0.322
2.837
6.74
17.134
32.585
-2.469
-0.125
2.445
27.933
-10.988
37.304
1
3
EE_DG17DG18:DC5DC6_FF
-0.153
1.107
5.431
4.689
47.826
22.713
-4.879
0.772
3.378
65.853
-6.456
52.864
1
4
EE_DG18BRU19:DA4DC5_FF
0.463
-0.395
3.04
-5.158
6.191
23.612
-2.583
-2.462
2.69
14.594
12.159
24.931
1
7
EE_DG21DG22:DC1DC2_FF
-1.842
0.368
3.413
-0.705
10.59
44.64
-0.504
2.301
3.437
13.713
0.913
45.821
1
8
EC_DG22DT1:DA22DC1_DF
-0.513
-1.144
3.138
0.028
-1.489
13.238
-3.397
2.239
3.244
-6.434
-0.122
13.322
1
28
EE_DT1DT2:DA21DA22_FF
-0.189
-0.343
3.506
-2.203
4.041
36.121
-1.149
-0.025
3.454
6.485
3.536
36.403
1
29
EE_DT2DG3:DC20DA21_FF
0.979
1.136
3.062
4.515
-0.799
41.945
1.656
-0.92
3.125
-1.113
-6.284
42.183
1
34
EE_DT7DA8:DT15DA16_FF
-0.912
2.033
2.94
-7.763
12.486
24.732
1.047
-0.06
3.652
26.383
16.404
28.713
1
36
EE_DT9DG10:DC13DA14_FF
0.809
2.163
3.535
-5.172
-0.742
43.954
2.946
-1.586
3.388
-0.987
6.881
44.248
1
1
EE_DT15DT16:DA7DA8_FF
-0.423
1.239
3.191
-1.056
25.673
13.64
-4.447
0.558
2.617
62.441
2.568
29.037
1
2
EE_DT16DG17:DC6DA7_FF
-0.143
1.129
3.322
-2.219
19.711
27.3
-1.71
-0.164
3.368
36.305
4.086
33.634
1
6
EE_DT20DG21:DC2DA3_FF
0.011
-0.176
3.567
2.695
4.11
44.106
-0.648
0.258
3.533
5.453
-3.576
44.365
1
62
II_BRU19DT20:DA3DA4_JJ
0.496
-1.13
3.185
1.633
2.947
24.239
-3.544
-0.683
3.054
6.975
-3.864
24.469
1
54
II_DA8DT9:DA14DT15_JJ
-0.433
0.31
3.017
1.403
6.752
26.458
-0.907
1.241
2.976
14.444
-3.001
27.326
1
49
II_DG3DG4:DC19DC20_JJ
0.056
1.467
3.123
-1.15
-3.539
37.991
2.661
-0.221
2.977
-5.42
1.762
38.167
1
50
II_DG4DG5:DC18DC19_JJ
0.224
0.62
3.214
-0.051
5.371
30.211
0.116
-0.434
3.273
10.203
0.097
30.674
1
51
II_DG5DG6:DC17DC18_JJ
-1.19
0.138
4.87
-2.409
45.992
35.01
-3.884
1.031
3.213
54.639
2.862
57.268
1
52
II_DG6DT7:DA16DC17_JJ
-1.484
0.058
3.638
6.054
42.664
5.24
-4.578
2.668
0.3
82.569
-11.717
43.394
1
56
II_DG10DG12:DC11DC13_JJ
0.417
-0.203
6.917
11.105
-1.446
71.922
-0.07
0.423
6.914
-1.224
-9.399
72.672
1
57
II_DG12DG13:DC10DC11_JJ
0.573
-0.31
2.813
7.078
16.809
32.568
-2.413
-0.087
2.443
27.455
-11.561
37.206
1
60
II_DG17DG18:DC5DC6_JJ
-0.137
1.076
5.35
4.836
47.773
23.232
-4.762
0.757
3.355
65.34
-6.614
53.04
1
61
II_DG18BRU19:DA4DC5_JJ
0.468
-0.434
3.063
-4.844
6.405
23.721
-2.724
-2.385
2.707
15.039
11.375
25.024
1
64
II_DG21DG22:DC1DC2_JJ
-1.851
0.364
3.323
-1.526
10.065
44.437
-0.449
2.253
3.382
13.105
1.987
45.53
1
65
IK_DG22DT1:DA22DC1_LJ
-0.576
-1.649
3.215
0.696
-2.713
12.549
-4.196
3.386
3.454
-12.215
-3.135
12.857
1
47
II_DT1DT2:DA21DA22_JJ
-0.185
-0.43
3.484
-2.421
3.796
35.5
-1.28
-0.068
3.426
6.195
3.951
35.775
1
48
II_DT2DG3:DC20DA21_JJ
1.048
1.077
3.107
5.879
-1.262
42.134
1.608
-0.869
3.186
-1.745
-8.128
42.542
1
53
II_DT7DA8:DT15DA16_JJ
-0.932
2.001
2.928
-8.235
12.527
24.342
0.957
-0.148
3.636
26.714
17.56
28.528
1
55
II_DT9DG10:DC13DA14_JJ
0.808
2.162
3.523
-4.989
-0.512
43.934
2.923
-1.569
3.392
-0.681
6.642
44.205
1
58
II_DT15DT16:DA7DA8_JJ
-0.421
1.222
3.219
-1.103
25.135
13.746
-4.512
0.546
2.643
61.738
2.71
28.617
1
59
II_DT16DG17:DC6DA7_JJ
-0.13
1.132
3.342
-2.043
19.206
27.506
-1.64
-0.159
3.4
35.394
3.764
33.502
1
63
II_DT20DG21:DC2DA3_JJ
0.029
-0.16
3.595
3.117
3.842
43.849
-0.609
0.283
3.564
5.125
-4.159
44.114
1
43
KK_BRU19DT20:DA3DA4_LL
0.426
-1.129
3.152
2.495
4.136
24.54
-3.766
-0.284
2.953
9.612
-5.798
25.004
1
73
KK_DA8DT9:DA14DT15_LL
-0.403
0.302
3.022
0.678
6.659
26.145
-0.94
1.026
2.994
14.421
-1.469
26.974
1
68
KK_DG3DG4:DC19DC20_LL
-0.017
1.518
3.07
-1.776
-3.999
39.318
2.674
-0.166
2.906
-5.921
2.63
39.551
1
69
KK_DG4DG5:DC18DC19_LL
0.19
0.526
3.202
0.057
4.88
29.906
0.03
-0.352
3.246
9.377
-0.109
30.293
1
70
KK_DG5DG6:DC17DC18_LL
-1.135
0.219
4.943
-1.214
46.275
33.694
-3.993
1.084
3.213
55.845
1.465
56.704
1
71
KK_DG6DT7:DA16DC17_LL
-1.501
0.099
3.544
5.595
43.132
4.59
-4.446
2.61
0.287
83.568
-10.841
43.724
1
75
KK_DG10DG12:DC11DC13_LL
0.426
-0.223
6.892
10.547
-1.598
71.621
-0.076
0.38
6.893
-1.358
-8.964
72.306
1
76
KK_DG12DG13:DC10DC11_LL
0.562
-0.326
2.804
7.023
17.01
32.733
-2.425
-0.085
2.421
27.631
-11.408
37.428
1
41
KK_DG17DG18:DC5DC6_LL
-0.165
1.106
5.366
4.93
48.789
22.605
-4.776
0.789
3.305
66.409
-6.71
53.703
1
42
KK_DG18BRU19:DA4DC5_LL
0.453
-0.384
3.03
-6.121
5.795
23.78
-2.401
-2.644
2.665
13.53
14.292
25.209
1
45
KK_DG21DG22:DC1DC2_LL
-1.861
0.316
3.348
-1.273
9.248
44.464
-0.443
2.295
3.394
12.064
1.66
45.385
1
46
KI_DG22DT1:DA22DC1_JL
-0.603
-1.637
3.172
0.416
-2.835
12.748
-4.02
3.116
3.43
-12.562
-1.843
13.065
1
66
KK_DT1DT2:DA21DA22_LL
-0.205
-0.416
3.434
-2.083
3.603
34.931
-1.25
0.015
3.382
5.977
3.455
35.17
1
67
KK_DT2DG3:DC20DA21_LL
1.073
1.102
3.187
5.032
0.59
42.59
1.448
-0.969
3.302
0.809
-6.898
42.877
1
72
KK_DT7DA8:DT15DA16_LL
-0.958
2.043
2.95
-8.474
12.437
24.611
1.057
-0.153
3.676
26.272
17.9
28.788
1
74
KK_DT9DG10:DC13DA14_LL
0.825
2.164
3.555
-4.339
-0.149
44.105
2.884
-1.527
3.455
-0.198
5.761
44.308
1
39
KK_DT15DT16:DA7DA8_LL
-0.408
1.228
3.207
-0.731
25.827
13.673
-4.467
0.614
2.607
62.547
1.769
29.177
1
40
KK_DT16DG17:DC6DA7_LL
-0.139
1.143
3.344
-2.323
19.202
27.339
-1.648
-0.199
3.406
35.536
4.299
33.383
1
44
KK_DT20DG21:DC2DA3_LL
0.022
-0.121
3.578
0.705
3.047
44.085
-0.472
0.043
3.563
4.053
-0.938
44.191
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.