4O3S: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: NA2817 PDB ID: 4O3S

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	T_8OG5:DC8_P	-0.112	-0.147	-0.303	-1.811	-12.39	-0.286
1	4	T_DA8:DT5_P	0.13	-0.167	0.016	4.13	-1.572	0.081
1	5	T_DC9:DG4_P	0.403	-0.088	-0.313	11.487	-4.635	3.394
1	7	T_DC11:DG2_P	0.049	-0.09	0.169	-3.914	-3.142	-0.372
1	3	T_DG7:DC6_P	-0.097	-0.154	-0.359	-8.964	-4.238	0.653
1	6	T_DG10:DC3_P	-0.216	-0.213	-0.09	-0.186	-3.938	2.053
1	2	T_DT6:DA7_P	-0.125	-0.097	0.237	-7.505	-17.293	2.81
1	8	T_DT12:DA1_P	-0.089	-0.192	-0.073	17.529	0.085	3.081

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.