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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA2817
PDB ID:
4O3S
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
1
TT_8OG5DT6:DA7DC8_PP
0.839
-1.057
3.402
-3.705
2.793
31.292
-2.463
-2.232
3.181
5.143
6.822
31.626
1
4
TT_DA8DC9:DG4DT5_PP
0.662
-0.655
3.273
2.838
1.037
31.004
-1.42
-0.688
3.296
1.934
-5.292
31.148
1
5
TT_DC9DG10:DC3DG4_PP
-0.646
-0.463
3.729
-4.537
4.785
33.932
-1.625
0.285
3.684
8.104
7.683
34.548
1
7
TT_DC11DT12:DA1DG2_PP
0.266
-0.002
2.994
-0.609
1.462
28.388
-0.311
-0.669
2.984
2.978
1.241
28.432
1
3
TT_DG7DA8:DT5DC6_PP
-0.74
-0.458
3.088
-0.935
2.914
34.885
-1.173
1.098
3.06
4.848
1.555
35.015
1
6
TT_DG10DC11:DG2DC3_PP
-0.281
-0.701
3.484
-2.899
1.943
36.38
-1.403
0.023
3.454
3.103
4.63
36.542
1
2
TT_DT6DG7:DC6DA7_PP
0.007
-1.109
3.405
6.572
8.631
28.835
-3.772
1.267
2.893
16.608
-12.645
30.768
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.