4O3S: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311

Search for released structures

NDB ID: NA2817 PDB ID: 4O3S

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	TT_8OG5DT6:DA7DC8_PP	0.839	-1.057	3.402	-3.705	2.793	31.292	-2.463	-2.232	3.181	5.143	6.822	31.626
1	4	TT_DA8DC9:DG4DT5_PP	0.662	-0.655	3.273	2.838	1.037	31.004	-1.42	-0.688	3.296	1.934	-5.292	31.148
1	5	TT_DC9DG10:DC3DG4_PP	-0.646	-0.463	3.729	-4.537	4.785	33.932	-1.625	0.285	3.684	8.104	7.683	34.548
1	7	TT_DC11DT12:DA1DG2_PP	0.266	-0.002	2.994	-0.609	1.462	28.388	-0.311	-0.669	2.984	2.978	1.241	28.432
1	3	TT_DG7DA8:DT5DC6_PP	-0.74	-0.458	3.088	-0.935	2.914	34.885	-1.173	1.098	3.06	4.848	1.555	35.015
1	6	TT_DG10DC11:DG2DC3_PP	-0.281	-0.701	3.484	-2.899	1.943	36.38	-1.403	0.023	3.454	3.103	4.63	36.542
1	2	TT_DT6DG7:DC6DA7_PP	0.007	-1.109	3.405	6.572	8.631	28.835	-3.772	1.267	2.893	16.608	-12.645	30.768

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.