A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: NA2910  PDB ID: 4OO8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13B_A3:DT18_C-0.150.198-0.446-12.658-4.3873.642
14B_A4:DT17_C0.08-0.233-0.701-3.921-8.7580.64
15B_A5:DT16_C0.07-0.237-0.0520.32-19.8412.23
18B_A8:DT13_C0.519-0.0910.173-7.267-16.3873.799
126B_A26:U45_B-0.086-0.051-0.1017.408-2.2222.035
130B_A32:U37_B0.7230.2540.4860.581-17.799-2.342
132B_A52:G62_B-7.522-5.3220.06-19.83210.305-35.18
136B_A68:G81_B0.3662.752-0.108-7.98316.87-57.851
137B_A69:U80_B-0.0090.170.79618.327-19.978-4.274
144B_A84:U94_B-0.8080.313-0.2360.87-12.627-5.774
113B_C13:DG8_C0.022-0.0910.098-7.374-10.956-0.528
115B_C15:DG6_C-0.14-0.225-0.1665.018-9.4373.936
120B_C20:DG1_C-0.11-0.212-0.232.693-2.9312.016
128B_C30:G39_B0.4440.2190.0421.766-25.5632.672
135B_C55:G58_B0.443-0.1950.31112.826-3.1437.479
138B_C70:G79_B0.1250.1110.767.223-31.0870.007
143B_C83:G95_B-0.6440.1370.076-0.4123.9913.588
145B_C85:G93_B0.3730.0050.1014.522-17.9652.209
146B_C86:G92_B0.5520.080.153-3.149-14.3480.795
11B_G1:DC20_C-0.167-0.3130.224-8.557-9.3342.031
12B_G2:DC19_C-0.4270.2-0.554-15.286-4.5546.815
19B_G9:DC12_C-0.58-0.311-0.274-9.035-8.862-6.376
110B_G10:DC11_C-0.4-0.302-0.034-12.318-13.7722.223
112B_G12:DC9_C-0.413-0.0820.198-11.676-10.8711.78
114B_G14:DC7_C-0.217-0.113-0.12-0.935-3.4855.298
118B_G18:DC3_C-0.779-0.139-0.039-9.721-7.4750.957
119B_G19:DC2_C-0.0620.137-0.129-6.326-5.0023.548
121B_G21:U50_B-2.865-0.5190.0283.96-4.14-1.35
127B_G29:C40_B-0.581-0.149-0.381-13.417-19.684-1.004
131B_G33:A36_B7.577-4.5630.62330.398-17.587-44.811
133B_G53:C61_B-0.291-0.075-0.14-9.2240.667-1.201
134B_G54:C60_B-0.402-0.0850.259-3.391-8.639-0.85
141B_G73:A76_B7.276-5.0290.27424.848-4.669-34.78
142B_G82:C96_B0.211-0.109-0.204-10.2271.7484.212
147B_G87:C91_B-0.665-0.0440.0270.5582.159-0.853
148B_G89:U90_B7.8751.2080.505-12.11731.57718.84
16B_U6:DA15_C0.2080.1210.128-8.668-24.45-0.443
17B_U7:DA14_C-0.446-0.29-0.806-5.9-10.5648.973
111B_U11:DA10_C-0.0330.00.308-9.947-10.8323.113
116B_U16:DA5_C0.235-0.068-0.1713.061-3.5476.209
117B_U17:DA4_C0.1750.032-0.478-0.9321.5679.212
122B_U22:A49_B-0.0530.0220.2536.732-11.989.385
123B_U23:A48_B-0.1980.074-0.10912.18-12.82810.885
124B_U24:A47_B0.281-0.1440.557-13.009-6.8260.149
125B_U25:A46_B0.164-0.1110.2142.894-7.4013.873
129B_U31:A38_B0.662-0.14-0.014-1.284-3.253-5.993
139B_U71:A78_B-0.346-0.1180.6133.884-34.229-10.01
140B_U72:A77_B-0.848-0.3450.5153.055-24.64-12.678
151E_A3:DT18_F-0.076-0.053-0.315-13.154-10.1121.778
152E_A4:DT17_F-0.142-0.035-0.331-5.067-11.729-2.693
153E_A5:DT16_F0.081-0.077-0.012-2.151-10.2476.391
156E_A8:DT13_F0.4030.1310.4-10.474-12.73211.291
174E_A26:U45_E-0.05-0.142-0.05710.3891.4970.554
177E_A32:U37_E0.951-0.2110.642-1.486-5.49-15.362
178E_A52:G62_E-7.435-5.229-0.289-21.80210.357-36.643
182E_A68:G81_E0.4542.811-0.036-7.08117.332-62.72
183E_A69:U80_E0.191-0.0390.6320.421-17.364-3.765
189E_A84:U94_E0.3360.1510.119-7.141-11.041-1.412
161E_C13:DG8_F-0.097-0.0780.025-0.768-9.323-0.648
163E_C15:DG6_F0.074-0.0810.0664.191-6.7826.011
168E_C20:DG1_F-0.049-0.072-0.236-5.0364.32.135
176E_C30:G39_E1.212-0.5050.1591.815-16.307-4.212
181E_C55:G58_E0.686-0.1740.23617.9478.0429.027
184E_C70:G79_E0.2960.1020.16112.083-25.5051.583
188E_C83:G95_E0.1230.063-0.092-3.934-1.8630.571
190E_C85:G93_E0.127-0.1270.191-0.48-16.818-1.586
191E_C86:G92_E0.6520.007-0.633-16.7932.682-13.09
149E_G1:DC20_F-0.236-0.140.057-1.486-1.845-0.247
150E_G2:DC19_F0.0390.111-0.267-13.212-7.3828.273
157E_G9:DC12_F-0.06-0.1580.079-2.136-3.1712.753
158E_G10:DC11_F-0.836-0.435-0.132-10.63-11.097-2.539
160E_G12:DC9_F-0.2620.0580.132-12.343-16.2535.327
162E_G14:DC7_F-0.174-0.024-0.179-4.395-3.6714.366
166E_G18:DC3_F-0.157-0.1860.035-10.202-6.115-0.976
167E_G19:DC2_F-0.3770.035-0.106-7.127-1.8145.628
169E_G21:U50_E-2.766-0.5140.152-2.26-8.576-3.661
175E_G29:C40_E-0.308-0.607-0.119-10.045-16.649-3.298
179E_G53:C61_E-0.236-0.118-0.483-9.813-5.9720.86
180E_G54:C60_E-0.507-0.2470.356-3.623-10.253-0.323
187E_G82:C96_E0.675-0.048-0.839-20.5-15.897-6.886
192E_G87:C91_E0.310.1240.1563.1811.0182.321
193E_G89:U90_E7.7321.465-0.786-4.20225.61916.033
154E_U6:DA15_F-0.278-0.1410.17-3.296-9.16912.193
155E_U7:DA14_F0.238-0.253-0.361-17.9790.4142.078
159E_U11:DA10_F0.021-0.1040.372-8.974-9.7265.306
164E_U16:DA5_F-0.232-0.132-0.4059.503-4.4456.471
165E_U17:DA4_F-0.321-0.252-0.378-5.3593.936.167
170E_U22:A49_E-0.442-0.0440.1264.727-16.1857.228
171E_U23:A48_E-0.448-0.033-0.16910.799-15.1289.42
172E_U24:A47_E0.189-0.140.333-9.842-8.9671.335
173E_U25:A46_E0.263-0.2110.2851.901-7.3762.332
185E_U71:A78_E-0.681-0.1450.3145.849-16.47.53
186E_U72:A77_E-0.8880.508-0.233-8.422-2.9337.105

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.