A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA2910  PDB ID: 4OO8 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13BB_A3A4:DT17DT18_CC-0.818-1.0673.252-1.2099.93928.859-3.9021.3272.77119.2272.33930.511
14BB_A4A5:DT16DT17_CC0.334-1.1983.35-3.28510.26332.282-3.635-1.0792.80317.8475.71433.988
15BB_A5U6:DA15DT16_CC0.089-1.433.643-1.47618.35335.202-4.3-0.3072.60828.12.2639.591
18BB_A8G9:DC12DT13_CC-0.113-1.313.4453.9574.08726.193-3.9061.2883.1578.885-8.60226.793
129BB_A32G33:A36U37_BB-2.901-1.913.011-3.5724.23352.958-2.3823.0283.0374.7323.99353.226
130BB_A52G53:C61G62_BB3.474-1.4193.1521.3940.33652.845-1.615-3.8143.2270.377-1.56652.863
133BB_A68A69:U80G81_BB2.801-0.982.818-10.57823.35829.453-3.3-5.0370.83238.11117.25838.863
134BB_A69C70:G79U80_BB0.395-1.73.3990.3178.14438.137-3.523-0.5552.9912.294-0.47838.966
140BB_A84C85:G93U94_BB0.537-1.3823.069-1.9032.83839.026-2.374-1.0112.9374.2382.84139.17
113BB_C13G14:DC7DG8_CC0.615-1.3673.2390.6447.26426.259-4.609-1.1552.78115.609-1.38327.236
115BB_C15U16:DA5DG6_CC0.093-1.6193.42-2.4079.00429.864-4.669-0.6182.80816.9594.53431.253
120BB_C20G21:U50DG1_BC4.134-0.6183.1840.164.28154.862-0.916-4.4663.1424.638-0.17455.017
127BB_C30U31:A38G39_BB-0.246-1.2273.481-0.9144.26733.972-2.7840.2673.3137.2651.55534.243
135BB_C70U71:A78G79_BB-0.352-1.9723.163.0492.88731.455-4.1021.1682.9255.295-5.59331.727
139BB_C83A84:U94G95_BB-0.345-1.633.0924.4798.31927.801-4.7741.5192.42916.714-8.99929.333
141BB_C85C86:G92G93_BB-0.266-1.43.3250.2597.73233.935-3.4870.4832.94313.037-0.43734.78
142BB_C86G87:C91G92_BB0.541-1.9673.152-1.5912.23422.796-5.674-1.8812.9045.6254.00722.958
11BB_G1G2:DC19DC20_CC0.842-2.1163.6076.6951.94830.34-4.36-0.1473.5673.661-12.58431.113
12BB_G2A3:DT18DC19_CC-0.74-1.8913.12-1.93513.84426.721-5.9831.0981.96927.6793.86930.098
19BB_G9G10:DC11DC12_CC1.115-1.533.3222.25410.07934.424-3.872-1.4982.84116.574-3.70735.895
110BB_G10U11:DA10DC11_CC-0.186-1.4913.216-2.0532.10633.469-2.914-0.0043.1253.6483.55633.594
112BB_G12C13:DG8DC9_CC-0.421-0.9453.167-0.5064.27136.57-2.0490.6013.0466.7770.80336.813
114BB_G14C15:DG6DC7_CC0.305-1.4113.2682.4855.73430.517-3.685-0.1112.97510.753-4.6631.136
118BB_G18G19:DC2DC3_CC0.444-1.7173.3413.5661.5533.085-3.257-0.1723.2882.709-6.23533.306
119BB_G19C20:DG1DC2_CC0.709-2.4013.2133.975-5.15624.468-3.872-0.3773.699-11.899-9.17425.307
121BB_G21U22:A49U50_BB0.131-0.9023.266-4.81312.69838.559-2.634-0.6962.80918.5427.02840.794
126BB_G29C30:G39C40_BB-0.918-1.4352.946-4.4711.38132.516-2.7530.9262.9812.457.93432.842
131BB_G53G54:C60C61_BB0.084-1.9633.1811.35-1.00431.469-3.4310.0923.242-1.85-2.48731.513
132BB_G54C55:G58C60_BB-0.692-0.6422.9132.1665.30221.057-3.4752.5542.5914.174-5.78921.813
138BB_G82C83:G95C96_BB0.252-2.0693.1781.7570.21228.853-4.191-0.1253.1720.425-3.52228.906
16BB_U6U7:DA14DA15_CC0.68-0.2183.3848.7876.97325.079-2.2880.873.25815.128-19.06527.437
17BB_U7A8:DT13DA14_CC0.598-0.6533.587-0.82816.12824.424-4.943-1.3732.63733.8051.73629.212
111BB_U11G12:DC9DA10_CC0.122-1.4543.312.0022.49328.724-3.4640.1973.1765.005-4.0228.898
116BB_U16U17:DA4DA5_CC0.703-2.4523.4941.2816.82725.391-7.178-1.2082.78215.173-2.84826.309
117BB_U17G18:DC3DA4_CC-0.803-2.3423.7390.1790.50323.78-5.8712.0163.6831.22-0.43423.786
122BB_U22U23:A48A49_BB0.062-0.8993.171.7838.30932.667-2.8140.1642.86114.47-3.10533.725
123BB_U23U24:A47A48_BB-1.025-0.7854.024-4.05627.56335.414-4.0120.9072.83538.7795.70744.782
124BB_U24U25:A46A47_BB0.363-1.1382.9721.058-2.00531.922-1.73-0.4823.046-3.639-1.92132.0
125BB_U25A26:U45A46_BB-0.28-1.5193.1950.516.22529.694-4.0690.6322.8211.981-0.98230.329
128BB_U31A32:U37A38_BB0.289-1.523.0482.01216.98832.124-4.409-0.2312.03128.33-3.35536.288
136BB_U71U72:A77A78_BB0.978-2.0563.1764.9482.39225.23-5.25-0.853.1025.395-11.15825.812
137BB_U72G73:A76A77_BB-3.119-1.682.866-0.9080.81855.882-1.8343.2822.8890.8720.96955.894
145EE_A3A4:DT17DT18_FF-0.735-1.1063.136-1.3069.37930.671-3.5481.1162.71617.2232.39832.066
146EE_A4A5:DT16DT17_FF0.531-1.3253.221-4.3889.4129.819-4.04-1.7252.59117.6288.2231.536
147EE_A5U6:DA15DT16_FF0.636-1.4643.3150.1379.9929.847-4.47-1.1492.69918.746-0.25731.439
150EE_A8G9:DC12DT13_FF-0.036-1.6643.1072.9910.53626.291-3.7680.8283.051.173-6.54726.463
170EE_A52G53:C61G62_EE3.568-1.5153.3482.931-0.65453.675-1.632-3.7533.541-0.723-3.24453.753
173EE_A68A69:U80G81_EE3.11-0.9542.842-9.30819.32531.672-3.114-5.5611.16531.31915.08638.097
174EE_A69C70:G79U80_EE0.699-1.7893.3984.1726.50738.113-3.486-0.5393.1199.841-6.3138.86
179EE_A84C85:G93U94_EE-0.2-1.2643.090.1923.32729.923-3.0620.4222.9356.418-0.3730.104
155EE_C13G14:DC7DG8_FF0.574-1.5643.4270.72310.3326.18-5.554-1.0182.64521.754-1.52128.12
157EE_C15U16:DA5DG6_FF-0.083-1.6863.2281.676.14227.084-4.880.5462.77612.89-3.50527.808
162EE_C20G21:U50DG1_EF3.979-0.6343.143-0.6377.33854.247-1.106-4.3662.9978.0060.69554.707
169EE_C30A32:U37G39_EE-1.799-3.6015.9450.66720.91464.325-4.6081.6664.69819.122-0.60967.294
175EE_C70U71:A78G79_EE-0.607-2.0073.26-6.57212.32224.112-6.779-0.1262.09826.81214.327.813
178EE_C83A84:U94G95_EE-0.367-1.5623.3591.3175.05631.99-3.680.8873.0669.099-2.3732.403
180EE_C85C86:G92G93_EE-0.479-1.1483.6618.4621.77936.967-2.0161.9243.4162.759-13.12637.93
181EE_C86G87:C91G92_EE1.847-1.6592.896-8.43110.10624.57-5.152-5.2611.41921.85818.23527.825
143EE_G1G2:DC19DC20_FF0.971-1.9323.63.8975.36634.135-4.114-0.9873.3549.036-6.56234.754
144EE_G2A3:DT18DC19_FF-1.201-2.0253.274-2.2414.10126.634-6.3861.9122.05628.1824.47730.159
151EE_G9G10:DC11DC12_FF0.166-2.1933.5414.2912.86325.221-5.7680.8933.2596.47-9.69825.735
152EE_G10U11:DA10DC11_FF0.549-1.8013.296-1.1480.38335.378-3.018-1.0733.2580.6291.88835.398
154EE_G12C13:DG8DC9_FF-0.39-1.0483.134-0.9190.84633.258-1.9650.5353.1171.4781.60533.281
156EE_G14C15:DG6DC7_FF0.219-1.5473.206-0.5474.34330.123-3.77-0.5212.9558.3011.04530.432
160EE_G18G19:DC2DC3_FF0.663-1.8713.2644.6960.33729.808-3.664-0.3073.3070.649-9.05730.169
161EE_G19C20:DG1DC2_FF0.577-2.4263.4816.255-5.45125.143-3.6170.6723.937-12.108-13.89426.456
163EE_G21U22:A49U50_EE0.042-0.9363.158-4.21413.99536.176-2.962-0.5322.61321.4896.47138.925
168EE_G29C30:G39C40_EE-1.136-2.0922.984-4.3072.17633.704-3.891.3132.9663.7297.3834.037
171EE_G53G54:C60C61_EE-0.166-1.8033.184-2.156-1.38931.557-3.053-0.0893.262-2.5483.95631.658
172EE_G54C55:G58C60_EE-0.858-0.5842.8012.7058.22422.829-3.472.7182.33519.884-6.53924.395
177EE_G82C83:G95C96_EE-0.212-2.0163.023-8.397-5.33625.834-2.927-1.5883.273-11.40917.95627.654
148EE_U6U7:DA14DA15_FF0.32-0.8323.5469.0277.90839.172-2.1220.6053.31611.472-13.09640.9
149EE_U7A8:DT13DA14_FF0.809-1.0932.841-1.48121.25128.56-4.167-1.4931.62437.2352.59535.497
153EE_U11G12:DC9DA10_FF-0.186-1.5523.3653.5441.28729.314-3.3211.1283.252.529-6.96629.55
158EE_U16U17:DA4DA5_FF0.708-2.523.905-1.6667.43626.29-7.328-1.9453.0415.9273.56927.354
159EE_U17G18:DC3DA4_FF-0.6-2.083.4930.663-0.01128.726-4.1891.3683.479-0.022-1.33628.734
164EE_U22U23:A48A49_EE0.076-0.8843.136-0.539.63731.856-3.028-0.2142.75817.0740.93933.25
165EE_U23U24:A47A48_EE-0.978-0.7723.974-4.60824.03735.223-3.9090.7982.98734.9976.7142.669
166EE_U24U25:A46A47_EE0.38-0.9533.051-0.2710.32233.452-1.705-0.7013.0390.5590.47133.455
167EE_U25A26:U45A46_EE-0.215-1.593.0620.4564.20729.634-3.8640.5012.818.172-0.88629.928
176EE_U71U72:A77A78_EE-0.064-1.723.5753.2858.57731.431-4.5730.6952.99315.424-5.90832.713

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.