A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA2969  PDB ID: 4Q0W 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_DA3:DT13_D-0.238-0.2530.0771.488-14.657-0.096
111C_DA11:DT5_D0.19-0.266-0.276-2.191-10.0830.502
15C_DC5:DG11_D0.198-0.1640.04-7.353-4.6033.879
16C_DC6:DG10_D0.162-0.3360.0772.177-1.3014.734
19C_DC9:DG7_D0.177-0.2850.055-5.667-9.348-2.547
110C_DC10:DG6_D-0.189-0.2460.334-7.858-5.216-0.576
112C_DC12:DG4_D-0.17-0.2270.071-2.017-12.8031.391
113C_DC13:DG3_D0.093-0.2120.369-8.981-9.4652.546
12C_DG2:DC14_D-0.362-0.1510.14111.204-14.923.274
17C_DG7:DC9_D-0.281-0.0960.1384.287-7.7150.153
11C_DT1:DA15_D-0.5-0.2460.389-5.138-16.1272.82
14C_DT4:DA12_D-0.061-0.25-0.089-1.453-13.129-0.632
18C_DT8:DA8_D-0.181-0.219-0.0220.771-12.5630.934
114C_DT14:DA2_D-0.391-0.353-0.225-2.238-3.6927.171
115C_DT15:DT1_D1.899-1.8420.18316.767-6.6333.389

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.