4R2D: Base Pair Morphology Parameters

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As of 15-Mar-2023 number of released structures: 12686

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NDB ID: NA3131 PDB ID: 4R2D

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	8	B_5FC9:DG4_C	-0.17	-0.053	0.004	-3.853	-11.555	-1.488
1	2	B_DC3:DG10_C	0.756	-0.059	-0.36	12.75	-2.468	10.012
1	1	B_DG2:DC11_C	-0.344	-0.312	-0.049	-7.48	-5.017	3.86
1	3	B_DG4:DC9_C	-0.447	-0.062	0.127	1.139	-5.406	0.554
1	5	B_DG6:DC7_C	-0.873	0.034	0.619	9.854	-11.342	3.998
1	6	B_DG7:DC6_C	-0.175	-0.012	0.354	-7.173	-13.646	-2.919
1	7	B_DG8:DC5_C	0.377	-0.119	0.005	-0.238	-16.398	-4.072
1	9	B_DG10:5FC3_C	-0.449	-0.102	0.325	5.576	-14.074	4.431
1	4	B_DT5:DA8_C	0.52	0.037	0.101	11.497	-10.963	8.914
1	10	B_DT11:DA2_C	0.377	-0.034	-0.222	6.418	-9.879	4.683

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.