4R2D: Base Pair Morphology Step Parameters

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As of 15-Mar-2023 number of released structures: 12686

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NDB ID: NA3131 PDB ID: 4R2D

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	8	BB_5FC9DG10:5FC3DG4_CC	-0.387	-0.084	3.109	-0.85	9.462	32.345	-1.609	0.536	2.976	16.545	1.487	33.675
1	2	BB_DC3DG4:DC9DG10_CC	-1.356	-0.424	3.494	-6.815	5.925	29.35	-2.088	1.084	3.561	11.359	13.066	30.679
1	1	BB_DG2DC3:DG10DC11_CC	0.805	-0.337	2.808	2.264	7.185	28.454	-1.982	-1.17	2.698	14.302	-4.506	29.415
1	3	BB_DG4DT5:DA8DC9_CC	0.65	-0.597	3.088	-0.033	10.089	31.965	-2.564	-1.133	2.777	17.776	0.057	33.48
1	5	BB_DG6DG7:DC6DC7_CC	-0.871	-1.029	3.633	-1.532	-2.155	36.909	-1.295	1.141	3.717	-3.399	2.416	37.0
1	6	BB_DG7DG8:DC5DC6_CC	-0.146	-0.499	3.232	0.95	8.47	37.549	-1.78	0.337	3.048	12.955	-1.453	38.47
1	7	BB_DG85FC9:DG4DC5_CC	1.018	-0.662	3.316	2.304	-7.595	26.377	0.575	-1.543	3.444	-16.184	-4.909	27.525
1	9	BB_DG10DT11:DA25FC3_CC	0.46	-0.472	3.291	2.77	3.037	34.826	-1.241	-0.346	3.265	5.052	-4.608	35.06
1	4	BB_DT5DG6:DC7DA8_CC	-1.107	-0.275	3.291	-9.514	-2.691	29.204	0.042	0.108	3.482	-5.155	18.222	30.798

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.