4RB3: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA3166 PDB ID: 4RB3

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_DA3:DT23_B	0.244	-0.272	-0.18	-3.113	-10.866	-1.145
1	4	A_DA4:DT22_B	-0.03	-0.162	0.078	0.814	-16.184	-1.486
1	9	A_DA9:DT17_B	0.317	-0.373	-0.264	-1.515	-23.015	7.75
1	10	A_DA10:DT16_B	-0.689	-0.05	-0.013	9.859	-16.274	2.568
1	11	A_DA11:DT15_B	-0.566	0.421	0.242	4.765	-9.602	6.143
1	14	A_DA14:DT12_B	-0.53	-0.586	0.324	6.382	-24.488	-4.848
1	20	A_DA20:DT6_B	0.252	-0.128	0.177	8.082	-18.642	-3.051
1	21	A_DA21:DT5_B	0.255	-0.408	0.511	9.927	-18.463	-1.613
1	8	A_DC8:DG18_B	0.512	-0.466	-0.031	11.528	-7.075	-3.812
1	13	A_DC13:DG13_B	-0.401	-0.61	-0.018	-1.405	-12.372	-5.601
1	19	A_DC19:DG7_B	0.436	-0.655	-0.359	6.186	-7.666	-3.948
1	7	A_DG7:DC19_B	0.167	-0.274	0.048	-1.42	-10.056	-5.212
1	18	A_DG18:DC8_B	0.44	-0.078	0.167	-8.196	-14.198	-8.527
1	24	A_DG24:DC2_B	-0.761	-0.023	0.168	-13.487	-12.339	-2.205
1	1	A_DT1:DA25_B	0.004	-0.189	0.806	-37.059	-7.429	4.601
1	2	A_DT2:DA24_B	0.036	-0.098	0.068	-12.129	-7.159	3.329
1	5	A_DT5:DA21_B	0.115	-0.146	0.216	-4.374	-15.526	-4.223
1	6	A_DT6:DA20_B	-0.198	-0.19	0.037	-6.568	-18.969	-0.345
1	12	A_DT12:DA14_B	-0.214	-0.455	-0.409	-2.593	-23.478	-5.278
1	15	A_DT15:DA11_B	0.324	0.243	-0.098	6.763	-4.135	-1.289
1	16	A_DT16:DA10_B	-0.493	0.453	-0.17	4.536	-13.266	4.138
1	17	A_DT17:DA9_B	-0.218	-0.142	0.167	-5.229	-10.12	8.889
1	22	A_DT22:DA4_B	-0.089	-0.45	0.062	-1.269	-18.172	3.338
1	23	A_DT23:DA3_B	-0.585	-0.249	0.23	-2.417	-12.786	1.536

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.