A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA3166  PDB ID: 4RB3 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_DA3:DT23_B0.244-0.272-0.18-3.113-10.866-1.145
14A_DA4:DT22_B-0.03-0.1620.0780.814-16.184-1.486
19A_DA9:DT17_B0.317-0.373-0.264-1.515-23.0157.75
110A_DA10:DT16_B-0.689-0.05-0.0139.859-16.2742.568
111A_DA11:DT15_B-0.5660.4210.2424.765-9.6026.143
114A_DA14:DT12_B-0.53-0.5860.3246.382-24.488-4.848
120A_DA20:DT6_B0.252-0.1280.1778.082-18.642-3.051
121A_DA21:DT5_B0.255-0.4080.5119.927-18.463-1.613
18A_DC8:DG18_B0.512-0.466-0.03111.528-7.075-3.812
113A_DC13:DG13_B-0.401-0.61-0.018-1.405-12.372-5.601
119A_DC19:DG7_B0.436-0.655-0.3596.186-7.666-3.948
17A_DG7:DC19_B0.167-0.2740.048-1.42-10.056-5.212
118A_DG18:DC8_B0.44-0.0780.167-8.196-14.198-8.527
124A_DG24:DC2_B-0.761-0.0230.168-13.487-12.339-2.205
11A_DT1:DA25_B0.004-0.1890.806-37.059-7.4294.601
12A_DT2:DA24_B0.036-0.0980.068-12.129-7.1593.329
15A_DT5:DA21_B0.115-0.1460.216-4.374-15.526-4.223
16A_DT6:DA20_B-0.198-0.190.037-6.568-18.969-0.345
112A_DT12:DA14_B-0.214-0.455-0.409-2.593-23.478-5.278
115A_DT15:DA11_B0.3240.243-0.0986.763-4.135-1.289
116A_DT16:DA10_B-0.4930.453-0.174.536-13.2664.138
117A_DT17:DA9_B-0.218-0.1420.167-5.229-10.128.889
122A_DT22:DA4_B-0.089-0.450.062-1.269-18.1723.338
123A_DT23:DA3_B-0.585-0.2490.23-2.417-12.7861.536

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.