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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA3166
PDB ID:
4RB3
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
3
A_DA3:DT23_B
0.244
-0.272
-0.18
-3.113
-10.866
-1.145
1
4
A_DA4:DT22_B
-0.03
-0.162
0.078
0.814
-16.184
-1.486
1
9
A_DA9:DT17_B
0.317
-0.373
-0.264
-1.515
-23.015
7.75
1
10
A_DA10:DT16_B
-0.689
-0.05
-0.013
9.859
-16.274
2.568
1
11
A_DA11:DT15_B
-0.566
0.421
0.242
4.765
-9.602
6.143
1
14
A_DA14:DT12_B
-0.53
-0.586
0.324
6.382
-24.488
-4.848
1
20
A_DA20:DT6_B
0.252
-0.128
0.177
8.082
-18.642
-3.051
1
21
A_DA21:DT5_B
0.255
-0.408
0.511
9.927
-18.463
-1.613
1
8
A_DC8:DG18_B
0.512
-0.466
-0.031
11.528
-7.075
-3.812
1
13
A_DC13:DG13_B
-0.401
-0.61
-0.018
-1.405
-12.372
-5.601
1
19
A_DC19:DG7_B
0.436
-0.655
-0.359
6.186
-7.666
-3.948
1
7
A_DG7:DC19_B
0.167
-0.274
0.048
-1.42
-10.056
-5.212
1
18
A_DG18:DC8_B
0.44
-0.078
0.167
-8.196
-14.198
-8.527
1
24
A_DG24:DC2_B
-0.761
-0.023
0.168
-13.487
-12.339
-2.205
1
1
A_DT1:DA25_B
0.004
-0.189
0.806
-37.059
-7.429
4.601
1
2
A_DT2:DA24_B
0.036
-0.098
0.068
-12.129
-7.159
3.329
1
5
A_DT5:DA21_B
0.115
-0.146
0.216
-4.374
-15.526
-4.223
1
6
A_DT6:DA20_B
-0.198
-0.19
0.037
-6.568
-18.969
-0.345
1
12
A_DT12:DA14_B
-0.214
-0.455
-0.409
-2.593
-23.478
-5.278
1
15
A_DT15:DA11_B
0.324
0.243
-0.098
6.763
-4.135
-1.289
1
16
A_DT16:DA10_B
-0.493
0.453
-0.17
4.536
-13.266
4.138
1
17
A_DT17:DA9_B
-0.218
-0.142
0.167
-5.229
-10.12
8.889
1
22
A_DT22:DA4_B
-0.089
-0.45
0.062
-1.269
-18.172
3.338
1
23
A_DT23:DA3_B
-0.585
-0.249
0.23
-2.417
-12.786
1.536
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.