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As of 11-Sep-2019 number of released structures: 10386
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NDB ID: NA3174  PDB ID: 4RD5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_DA5:DT29_D-0.056-0.405-0.074-3.675-19.815-7.99
14C_DA6:DT28_D-0.098-0.1290.42914.736-2.431-1.115
110C_DA12:DT22_D0.13-0.3290.1270.5470.373.631
111C_DA13:DT21_D0.0870.1250.2514.019-14.6694.673
11C_DC3:DG31_D-0.199-0.4720.426-13.421-19.665-5.56
16C_DC8:DG26_D0.0860.020.503-3.372-1.3150.344
19C_DC11:DG23_D0.378-0.3750.675-0.412-23.437-6.082
113C_DC15:DG19_D-0.171-0.1740.0396.745-9.378-2.662
114C_DC16:DG18_D-0.9440.0840.2355.761-24.994-7.714
15C_DG7:DC27_D0.364-0.0390.9927.756-33.179-6.161
17C_DG9:DC25_D0.318-0.0210.6648.386-10.634-5.25
18C_DG10:DC24_D0.203-0.2590.57311.337-22.3272.735
12C_DT4:DA30_D-0.6470.3950.604-16.578-16.936-1.849
112C_DT14:DA20_D0.328-0.2180.0246.803-13.4183.459
117E_DA5:DT29_F0.308-0.3660.061-6.011-12.734-2.427
118E_DA6:DT28_F-0.295-0.3010.0664.157-4.8225.209
124E_DA12:DT22_F0.484-0.2310.2480.8720.2380.995
125E_DA13:DT21_F0.745-0.2510.2115.279-12.2740.764
115E_DC3:DG31_F-0.2470.149-0.1630.112-1.6654.495
120E_DC8:DG26_F0.32-0.2750.373-5.074-1.577-1.51
123E_DC11:DG23_F0.542-0.3070.394.645-28.667-5.436
127E_DC15:DG19_F1.121-0.5990.273-5.432-18.4580.977
128E_DC16:DG18_F2.2610.547-0.0565.575-8.48817.681
119E_DG7:DC27_F-0.008-0.0560.9065.259-30.054-12.094
121E_DG9:DC25_F0.337-0.2060.6415.449-17.661-8.093
122E_DG10:DC24_F-0.243-0.3380.50710.625-22.7760.552
116E_DT4:DA30_F-0.583-0.1520.246-2.737-16.3674.413
126E_DT14:DA20_F0.532-0.3380.376-3.542-23.385-1.653

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.