A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA3178  PDB ID: 4RDU 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12B_DA3:DT12_C-0.048-0.120.2713.022-13.654-1.542
15B_DA6:DT9_C0.054-0.097-0.1627.465-9.8034.793
16B_DA7:DT8_C0.05-0.1740.0927.589-14.1173.25
19B_DA10:DT5_C-0.045-0.19-0.231-7.868-7.9345.037
13B_DC4:DG11_C0.13-0.2130.4611.157-15.114-1.185
112B_DC13:DG2_C0.415-0.152-0.1033.86-4.9312.401
11B_DG2:DC13_C-0.362-0.241-0.197.868-0.065-0.137
110B_DG11:DC4_C-0.327-0.219-0.027-10.015-7.4670.329
113B_DG14:DC1_C0.192-0.1390.4737.643-16.037-7.425
14B_DT5:DA10_C-0.078-0.1170.086-3.17-12.6922.98
17B_DT8:DA7_C0.067-0.0430.04.404-14.586.649
18B_DT9:DA6_C-0.07-0.123-0.3413.37-15.0844.027
111B_DT12:DA3_C0.114-0.0370.122-7.766-7.203-0.88
115E_DA3:DT12_F0.4410.0230.09610.331-13.3730.932
118E_DA6:DT9_F-0.199-0.1360.0046.12-14.2213.5
119E_DA7:DT8_F-0.13-0.040.1343.015-14.71.219
122E_DA10:DT5_F0.096-0.167-0.293-12.526-6.4526.245
116E_DC4:DG11_F0.058-0.080.1454.824-18.095.351
125E_DC13:DG2_F0.208-0.073-0.001-0.037-0.9313.578
114E_DG2:DC13_F-0.4140.205-0.0826.232-2.4075.895
123E_DG11:DC4_F-0.196-0.1220.006-8.62-5.83-0.787
126E_DG14:DC1_F0.104-0.1310.1534.441-10.55-10.064
117E_DT5:DA10_F0.22-0.3590.1243.65-6.6651.723
120E_DT8:DA7_F-0.073-0.0780.2981.012-16.2426.029
121E_DT9:DA6_F-0.099-0.079-0.071-0.24-13.2672.709
124E_DT12:DA3_F-0.0190.0420.22-6.15-6.41-1.284

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.