Download
Software
Tools
Education
Standards
About NDB
A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search DNA
Search RNA
Advanced Search
Search for released structures
NDB ID:
NA3178
PDB ID:
4RDU
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
B_DA3:DT12_C
-0.048
-0.12
0.271
3.022
-13.654
-1.542
1
5
B_DA6:DT9_C
0.054
-0.097
-0.162
7.465
-9.803
4.793
1
6
B_DA7:DT8_C
0.05
-0.174
0.092
7.589
-14.117
3.25
1
9
B_DA10:DT5_C
-0.045
-0.19
-0.231
-7.868
-7.934
5.037
1
3
B_DC4:DG11_C
0.13
-0.213
0.461
1.157
-15.114
-1.185
1
12
B_DC13:DG2_C
0.415
-0.152
-0.103
3.86
-4.931
2.401
1
1
B_DG2:DC13_C
-0.362
-0.241
-0.19
7.868
-0.065
-0.137
1
10
B_DG11:DC4_C
-0.327
-0.219
-0.027
-10.015
-7.467
0.329
1
13
B_DG14:DC1_C
0.192
-0.139
0.473
7.643
-16.037
-7.425
1
4
B_DT5:DA10_C
-0.078
-0.117
0.086
-3.17
-12.692
2.98
1
7
B_DT8:DA7_C
0.067
-0.043
0.0
4.404
-14.58
6.649
1
8
B_DT9:DA6_C
-0.07
-0.123
-0.341
3.37
-15.084
4.027
1
11
B_DT12:DA3_C
0.114
-0.037
0.122
-7.766
-7.203
-0.88
1
15
E_DA3:DT12_F
0.441
0.023
0.096
10.331
-13.373
0.932
1
18
E_DA6:DT9_F
-0.199
-0.136
0.004
6.12
-14.221
3.5
1
19
E_DA7:DT8_F
-0.13
-0.04
0.134
3.015
-14.7
1.219
1
22
E_DA10:DT5_F
0.096
-0.167
-0.293
-12.526
-6.452
6.245
1
16
E_DC4:DG11_F
0.058
-0.08
0.145
4.824
-18.09
5.351
1
25
E_DC13:DG2_F
0.208
-0.073
-0.001
-0.037
-0.931
3.578
1
14
E_DG2:DC13_F
-0.414
0.205
-0.082
6.232
-2.407
5.895
1
23
E_DG11:DC4_F
-0.196
-0.122
0.006
-8.62
-5.83
-0.787
1
26
E_DG14:DC1_F
0.104
-0.131
0.153
4.441
-10.55
-10.064
1
17
E_DT5:DA10_F
0.22
-0.359
0.124
3.65
-6.665
1.723
1
20
E_DT8:DA7_F
-0.073
-0.078
0.298
1.012
-16.242
6.029
1
21
E_DT9:DA6_F
-0.099
-0.079
-0.071
-0.24
-13.267
2.709
1
24
E_DT12:DA3_F
-0.019
0.042
0.22
-6.15
-6.41
-1.284
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.