4RDU: Base Pair Morphology Step Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA3178 PDB ID: 4RDU

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	BB_DA3DC4:DG11DT12_CC	0.492	-1.3	3.298	-2.022	4.748	35.092	-2.816	-1.098	3.069	7.823	3.331	35.458
1	5	BB_DA6DA7:DT8DT9_CC	0.211	-0.532	3.193	-2.921	2.805	32.628	-1.404	-0.856	3.107	4.969	5.175	32.871
1	6	BB_DA7DT8:DA7DT8_CC	0.677	-0.921	3.265	1.327	0.417	32.738	-1.704	-0.972	3.278	0.74	-2.353	32.766
1	9	BB_DA10DG11:DC4DT5_CC	-1.345	-0.005	3.283	-7.626	8.615	33.105	-1.373	1.028	3.395	14.582	12.908	34.995
1	3	BB_DC4DT5:DA10DG11_CC	-0.138	-0.745	3.349	6.234	3.033	32.619	-1.808	1.288	3.189	5.325	-10.945	33.328
1	12	BB_DC13DG14:DC1DG2_CC	-0.952	0.807	3.213	-4.879	2.783	38.25	0.874	0.832	3.353	4.22	7.396	38.645
1	1	BB_DG2DA3:DT12DC13_CC	-0.65	-0.249	3.408	-5.834	-2.763	39.346	-0.027	0.239	3.474	-4.07	8.594	39.851
1	10	BB_DG11DT12:DA3DC4_CC	-0.806	-0.721	3.256	0.301	0.269	34.901	-1.242	1.39	3.244	0.448	-0.502	34.904
1	4	BB_DT5DA6:DT9DA10_CC	-0.298	0.763	3.186	3.216	7.661	33.007	0.085	1.021	3.234	13.224	-5.551	34.008
1	7	BB_DT8DT9:DA6DA7_CC	-0.169	-0.353	3.209	4.056	4.811	34.517	-1.287	0.871	3.095	8.026	-6.765	35.069
1	8	BB_DT9DA10:DT5DA6_CC	1.201	0.635	3.521	3.209	8.456	38.436	-0.17	-1.358	3.659	12.632	-4.794	39.446
1	11	BB_DT12DC13:DG2DA3_CC	0.983	0.833	3.076	3.737	1.95	35.819	1.08	-1.078	3.198	3.158	-6.05	36.058
1	14	EE_DA3DC4:DG11DT12_FF	0.649	-0.943	3.394	-0.487	-2.308	29.059	-1.346	-1.4	3.445	-4.591	0.969	29.153
1	17	EE_DA6DA7:DT8DT9_FF	0.132	-0.447	3.239	-2.807	1.973	33.462	-1.091	-0.679	3.187	3.415	4.86	33.632
1	18	EE_DA7DT8:DA7DT8_FF	0.516	-0.911	3.281	-0.172	-0.844	33.917	-1.426	-0.911	3.299	-1.447	0.295	33.928
1	21	EE_DA10DG11:DC4DT5_FF	-1.578	0.196	3.105	-7.674	7.135	33.49	-0.757	1.457	3.345	12.022	12.929	35.046
1	15	EE_DC4DT5:DA10DG11_FF	-0.266	-0.56	3.297	1.718	4.773	35.201	-1.61	0.685	3.18	7.842	-2.822	35.553
1	24	EE_DC13DG14:DC1DG2_FF	-1.47	0.714	3.267	-3.537	1.093	34.771	1.02	1.9	3.416	1.822	5.898	34.962
1	13	EE_DG2DA3:DT12DC13_FF	-0.533	0.327	3.239	-3.335	0.213	41.632	0.436	0.399	3.271	0.298	4.683	41.76
1	22	EE_DG11DT12:DA3DC4_FF	-0.798	-0.671	3.209	-1.658	-1.234	33.906	-0.954	1.104	3.265	-2.113	2.841	33.967
1	16	EE_DT5DA6:DT9DA10_FF	0.078	0.258	3.221	2.984	5.529	33.868	-0.419	0.329	3.217	9.391	-5.068	34.429
1	19	EE_DT8DT9:DA6DA7_FF	-0.213	-0.291	3.183	2.929	-0.011	35.51	-0.474	0.762	3.156	-0.018	-4.793	35.626
1	20	EE_DT9DA10:DT5DA6_FF	1.33	0.621	3.596	5.906	6.561	40.297	0.073	-1.161	3.797	9.388	-8.45	41.213
1	23	EE_DT12DC13:DG2DA3_FF	1.233	0.662	3.183	3.161	2.353	36.195	0.734	-1.536	3.311	3.773	-5.07	36.401

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.