A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA3178  PDB ID: 4RDU 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12BB_DA3DC4:DG11DT12_CC0.492-1.33.298-2.0224.74835.092-2.816-1.0983.0697.8233.33135.458
15BB_DA6DA7:DT8DT9_CC0.211-0.5323.193-2.9212.80532.628-1.404-0.8563.1074.9695.17532.871
16BB_DA7DT8:DA7DT8_CC0.677-0.9213.2651.3270.41732.738-1.704-0.9723.2780.74-2.35332.766
19BB_DA10DG11:DC4DT5_CC-1.345-0.0053.283-7.6268.61533.105-1.3731.0283.39514.58212.90834.995
13BB_DC4DT5:DA10DG11_CC-0.138-0.7453.3496.2343.03332.619-1.8081.2883.1895.325-10.94533.328
112BB_DC13DG14:DC1DG2_CC-0.9520.8073.213-4.8792.78338.250.8740.8323.3534.227.39638.645
11BB_DG2DA3:DT12DC13_CC-0.65-0.2493.408-5.834-2.76339.346-0.0270.2393.474-4.078.59439.851
110BB_DG11DT12:DA3DC4_CC-0.806-0.7213.2560.3010.26934.901-1.2421.393.2440.448-0.50234.904
14BB_DT5DA6:DT9DA10_CC-0.2980.7633.1863.2167.66133.0070.0851.0213.23413.224-5.55134.008
17BB_DT8DT9:DA6DA7_CC-0.169-0.3533.2094.0564.81134.517-1.2870.8713.0958.026-6.76535.069
18BB_DT9DA10:DT5DA6_CC1.2010.6353.5213.2098.45638.436-0.17-1.3583.65912.632-4.79439.446
111BB_DT12DC13:DG2DA3_CC0.9830.8333.0763.7371.9535.8191.08-1.0783.1983.158-6.0536.058
114EE_DA3DC4:DG11DT12_FF0.649-0.9433.394-0.487-2.30829.059-1.346-1.43.445-4.5910.96929.153
117EE_DA6DA7:DT8DT9_FF0.132-0.4473.239-2.8071.97333.462-1.091-0.6793.1873.4154.8633.632
118EE_DA7DT8:DA7DT8_FF0.516-0.9113.281-0.172-0.84433.917-1.426-0.9113.299-1.4470.29533.928
121EE_DA10DG11:DC4DT5_FF-1.5780.1963.105-7.6747.13533.49-0.7571.4573.34512.02212.92935.046
115EE_DC4DT5:DA10DG11_FF-0.266-0.563.2971.7184.77335.201-1.610.6853.187.842-2.82235.553
124EE_DC13DG14:DC1DG2_FF-1.470.7143.267-3.5371.09334.7711.021.93.4161.8225.89834.962
113EE_DG2DA3:DT12DC13_FF-0.5330.3273.239-3.3350.21341.6320.4360.3993.2710.2984.68341.76
122EE_DG11DT12:DA3DC4_FF-0.798-0.6713.209-1.658-1.23433.906-0.9541.1043.265-2.1132.84133.967
116EE_DT5DA6:DT9DA10_FF0.0780.2583.2212.9845.52933.868-0.4190.3293.2179.391-5.06834.429
119EE_DT8DT9:DA6DA7_FF-0.213-0.2913.1832.929-0.01135.51-0.4740.7623.156-0.018-4.79335.626
120EE_DT9DA10:DT5DA6_FF1.330.6213.5965.9066.56140.2970.073-1.1613.7979.388-8.4541.213
123EE_DT12DC13:DG2DA3_FF1.2330.6623.1833.1612.35336.1950.734-1.5363.3113.773-5.0736.401

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.