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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA3178
PDB ID:
4RDU
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
2
BB_DA3DC4:DG11DT12_CC
0.492
-1.3
3.298
-2.022
4.748
35.092
-2.816
-1.098
3.069
7.823
3.331
35.458
1
5
BB_DA6DA7:DT8DT9_CC
0.211
-0.532
3.193
-2.921
2.805
32.628
-1.404
-0.856
3.107
4.969
5.175
32.871
1
6
BB_DA7DT8:DA7DT8_CC
0.677
-0.921
3.265
1.327
0.417
32.738
-1.704
-0.972
3.278
0.74
-2.353
32.766
1
9
BB_DA10DG11:DC4DT5_CC
-1.345
-0.005
3.283
-7.626
8.615
33.105
-1.373
1.028
3.395
14.582
12.908
34.995
1
3
BB_DC4DT5:DA10DG11_CC
-0.138
-0.745
3.349
6.234
3.033
32.619
-1.808
1.288
3.189
5.325
-10.945
33.328
1
12
BB_DC13DG14:DC1DG2_CC
-0.952
0.807
3.213
-4.879
2.783
38.25
0.874
0.832
3.353
4.22
7.396
38.645
1
1
BB_DG2DA3:DT12DC13_CC
-0.65
-0.249
3.408
-5.834
-2.763
39.346
-0.027
0.239
3.474
-4.07
8.594
39.851
1
10
BB_DG11DT12:DA3DC4_CC
-0.806
-0.721
3.256
0.301
0.269
34.901
-1.242
1.39
3.244
0.448
-0.502
34.904
1
4
BB_DT5DA6:DT9DA10_CC
-0.298
0.763
3.186
3.216
7.661
33.007
0.085
1.021
3.234
13.224
-5.551
34.008
1
7
BB_DT8DT9:DA6DA7_CC
-0.169
-0.353
3.209
4.056
4.811
34.517
-1.287
0.871
3.095
8.026
-6.765
35.069
1
8
BB_DT9DA10:DT5DA6_CC
1.201
0.635
3.521
3.209
8.456
38.436
-0.17
-1.358
3.659
12.632
-4.794
39.446
1
11
BB_DT12DC13:DG2DA3_CC
0.983
0.833
3.076
3.737
1.95
35.819
1.08
-1.078
3.198
3.158
-6.05
36.058
1
14
EE_DA3DC4:DG11DT12_FF
0.649
-0.943
3.394
-0.487
-2.308
29.059
-1.346
-1.4
3.445
-4.591
0.969
29.153
1
17
EE_DA6DA7:DT8DT9_FF
0.132
-0.447
3.239
-2.807
1.973
33.462
-1.091
-0.679
3.187
3.415
4.86
33.632
1
18
EE_DA7DT8:DA7DT8_FF
0.516
-0.911
3.281
-0.172
-0.844
33.917
-1.426
-0.911
3.299
-1.447
0.295
33.928
1
21
EE_DA10DG11:DC4DT5_FF
-1.578
0.196
3.105
-7.674
7.135
33.49
-0.757
1.457
3.345
12.022
12.929
35.046
1
15
EE_DC4DT5:DA10DG11_FF
-0.266
-0.56
3.297
1.718
4.773
35.201
-1.61
0.685
3.18
7.842
-2.822
35.553
1
24
EE_DC13DG14:DC1DG2_FF
-1.47
0.714
3.267
-3.537
1.093
34.771
1.02
1.9
3.416
1.822
5.898
34.962
1
13
EE_DG2DA3:DT12DC13_FF
-0.533
0.327
3.239
-3.335
0.213
41.632
0.436
0.399
3.271
0.298
4.683
41.76
1
22
EE_DG11DT12:DA3DC4_FF
-0.798
-0.671
3.209
-1.658
-1.234
33.906
-0.954
1.104
3.265
-2.113
2.841
33.967
1
16
EE_DT5DA6:DT9DA10_FF
0.078
0.258
3.221
2.984
5.529
33.868
-0.419
0.329
3.217
9.391
-5.068
34.429
1
19
EE_DT8DT9:DA6DA7_FF
-0.213
-0.291
3.183
2.929
-0.011
35.51
-0.474
0.762
3.156
-0.018
-4.793
35.626
1
20
EE_DT9DA10:DT5DA6_FF
1.33
0.621
3.596
5.906
6.561
40.297
0.073
-1.161
3.797
9.388
-8.45
41.213
1
23
EE_DT12DC13:DG2DA3_FF
1.233
0.662
3.183
3.161
2.353
36.195
0.734
-1.536
3.311
3.773
-5.07
36.401
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.