4RQ5: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471

Search for released structures

NDB ID: NA3289 PDB ID: 4RQ5

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	D_DC3:DG3_T	-0.522	0.101	0.039	-0.103	-14.563	-1.795
1	1	D_DG1:DC5_T	-0.343	0.002	-0.176	-10.178	-2.586	-4.308
1	4	D_DG4:DC2_T	0.703	0.061	0.6	1.529	-16.612	-7.285
1	5	D_DG5:DC1_T	-0.638	-0.345	0.649	-8.571	-6.458	1.375
1	2	D_DT2:DA4_T	0.392	-0.045	0.415	-6.098	-13.712	-5.465
1	10	P_DA5:DT12_T	-0.154	0.044	0.021	-0.535	-11.865	4.557
1	16	P_DA11:8OG6_T	0.219	4.602	-0.52	1.518	6.88	-79.727
1	7	P_DC2:DG15_T	0.021	-0.207	0.329	-7.181	-12.369	-0.709
1	13	P_DC8:DG9_T	0.07	-0.138	-0.49	3.439	-7.901	-4.631
1	15	P_DC10:DG7_T	0.026	-0.099	0.049	-15.944	0.463	0.521
1	6	P_DG1:DC16_T	0.241	0.037	0.368	-3.354	-11.23	-0.99
1	9	P_DG4:DC13_T	-0.035	-0.147	-0.314	-5.125	-11.655	-3.263
1	12	P_DG7:DC10_T	-0.459	-0.263	-0.06	-4.377	-12.059	-1.185
1	14	P_DG9:DC8_T	-0.443	-0.147	-0.463	-26.171	-5.901	0.123
1	8	P_DT3:DA14_T	-0.23	-0.135	0.067	-0.63	-9.67	-0.758
1	11	P_DT6:DA11_T	0.2	-0.134	0.175	4.963	-12.813	1.494

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.