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As of 29-Jun-2022 number of released structures: 12153
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NDB ID:
NA3289
PDB ID:
4RQ5
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
3
D_DC3:DG3_T
-0.522
0.101
0.039
-0.103
-14.563
-1.795
1
1
D_DG1:DC5_T
-0.343
0.002
-0.176
-10.178
-2.586
-4.308
1
4
D_DG4:DC2_T
0.703
0.061
0.6
1.529
-16.612
-7.285
1
5
D_DG5:DC1_T
-0.638
-0.345
0.649
-8.571
-6.458
1.375
1
2
D_DT2:DA4_T
0.392
-0.045
0.415
-6.098
-13.712
-5.465
1
10
P_DA5:DT12_T
-0.154
0.044
0.021
-0.535
-11.865
4.557
1
16
P_DA11:8OG6_T
0.219
4.602
-0.52
1.518
6.88
-79.727
1
7
P_DC2:DG15_T
0.021
-0.207
0.329
-7.181
-12.369
-0.709
1
13
P_DC8:DG9_T
0.07
-0.138
-0.49
3.439
-7.901
-4.631
1
15
P_DC10:DG7_T
0.026
-0.099
0.049
-15.944
0.463
0.521
1
6
P_DG1:DC16_T
0.241
0.037
0.368
-3.354
-11.23
-0.99
1
9
P_DG4:DC13_T
-0.035
-0.147
-0.314
-5.125
-11.655
-3.263
1
12
P_DG7:DC10_T
-0.459
-0.263
-0.06
-4.377
-12.059
-1.185
1
14
P_DG9:DC8_T
-0.443
-0.147
-0.463
-26.171
-5.901
0.123
1
8
P_DT3:DA14_T
-0.23
-0.135
0.067
-0.63
-9.67
-0.758
1
11
P_DT6:DA11_T
0.2
-0.134
0.175
4.963
-12.813
1.494
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.