A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
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NDB ID: NA3289  PDB ID: 4RQ5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13D_DC3:DG3_T-0.5220.1010.039-0.103-14.563-1.795
11D_DG1:DC5_T-0.3430.002-0.176-10.178-2.586-4.308
14D_DG4:DC2_T0.7030.0610.61.529-16.612-7.285
15D_DG5:DC1_T-0.638-0.3450.649-8.571-6.4581.375
12D_DT2:DA4_T0.392-0.0450.415-6.098-13.712-5.465
110P_DA5:DT12_T-0.1540.0440.021-0.535-11.8654.557
116P_DA11:8OG6_T0.2194.602-0.521.5186.88-79.727
17P_DC2:DG15_T0.021-0.2070.329-7.181-12.369-0.709
113P_DC8:DG9_T0.07-0.138-0.493.439-7.901-4.631
115P_DC10:DG7_T0.026-0.0990.049-15.9440.4630.521
16P_DG1:DC16_T0.2410.0370.368-3.354-11.23-0.99
19P_DG4:DC13_T-0.035-0.147-0.314-5.125-11.655-3.263
112P_DG7:DC10_T-0.459-0.263-0.06-4.377-12.059-1.185
114P_DG9:DC8_T-0.443-0.147-0.463-26.171-5.9010.123
18P_DT3:DA14_T-0.23-0.1350.067-0.63-9.67-0.758
111P_DT6:DA11_T0.2-0.1340.1754.963-12.8131.494

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.