A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA3313  PDB ID: 4RUA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12T_DA407:DT512_P0.121-0.229-0.1956.1994.7195.087
13T_DA408:DT511_P-0.7130.1760.1746.879-14.3145.084
15T_DC410:DG509_P0.154-0.022-0.0240.704-7.8885.14
16T_DC411:DG508_P-0.314-0.190.287-7.276-5.2140.276
19T_DC414:DG505_P-0.105-0.0980.016-4.138-2.8063.83
110T_DC415:DG504_P0.1-0.1880.121-7.32-6.5463.748
111T_DC416:DG503_P0.475-0.3470.444-5.505-7.354-3.735
112T_DC417:DG502_P0.257-0.283-0.097-3.736-2.822-0.56
113T_DC418:DG501_P0.139-0.099-0.1762.92-0.423-4.208
11T_DG406:DC513_P-1.0520.036-0.433-9.634-5.2446.474
14T_DT409:DA510_P-0.764-0.1660.1045.73-8.659-2.975
17T_DT412:DA507_P-0.144-0.156-0.1955.663-9.242.354
18T_DT413:DA506_P0.061-0.129-0.1150.58-10.9541.682

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.