A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA3313  PDB ID: 4RUA 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12TT_DA407DA408:DT511DT512_PP-0.557-0.0213.315-1.9231.83132.149-0.370.6553.3353.33.46432.256
13TT_DA408DT409:DA510DT511_PP-0.421-0.7683.462-3.9535.63927.999-2.86-0.0773.27511.4378.01728.817
15TT_DC410DC411:DG508DG509_PP-0.51-0.8063.528-2.6410.69929.946-1.710.3973.5391.3495.09730.067
16TT_DC411DT412:DA507DG508_PP0.109-0.0092.9714.414.75133.482-0.7030.4522.9328.152-7.56734.087
19TT_DC414DC415:DG504DG505_PP-0.413-0.5513.374-0.1999.70529.713-2.880.7293.04918.3210.37631.224
110TT_DC415DC416:DG503DG504_PP-0.65-0.4313.333-3.6036.08834.764-1.6170.5293.26310.065.95435.454
111TT_DC416DC417:DG502DG503_PP1.176-0.4653.2457.9174.12230.811-1.606-0.6623.3487.561-14.52232.048
112TT_DC417DC418:DG501DG502_PP-0.650.2023.257-0.5784.43830.102-0.5041.1233.2648.4861.10430.425
11TT_DG406DA407:DT512DC513_PP0.142-0.113.008-4.1558.59129.358-1.735-1.0062.81816.4137.93830.838
14TT_DT409DC410:DG509DA510_PP0.671-0.433.318-0.157-1.98741.774-0.39-0.9563.332-2.7840.22141.82
17TT_DT412DT413:DA506DA507_PP0.317-0.2483.367-0.7274.69834.03-1.171-0.6543.2977.9791.23534.351
18TT_DT413DC414:DG505DA506_PP0.658-0.5223.4130.5692.93432.628-1.451-1.0653.3655.209-1.01132.761

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.