4TMU: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 31-May-2023 number of released structures: 12820

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NDB ID: 4TMU PDB ID: 4TMU

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	B_DA5:DT20_B	0.148	0.129	0.361	8.627	-13.862	9.121
1	5	B_DA7:DT18_B	1.208	0.09	-0.677	6.366	-16.522	-5.609
1	6	B_DA8:DT17_B	0.172	-0.164	-0.438	1.011	-23.315	4.575
1	1	B_DG3:DC22_B	-0.503	-0.387	1.654	32.015	22.996	10.857
1	4	B_DG6:DC19_B	0.124	0.119	0.04	7.531	-16.659	4.529
1	9	B_DG11:DA14_B	6.121	-3.199	1.927	10.488	-17.667	20.391
1	2	B_DT4:DA21_B	-0.329	-0.141	-0.245	-4.119	-7.288	-1.388
1	7	B_DT9:DA16_B	0.269	-0.119	0.137	-2.064	-20.496	7.284
1	8	B_DT10:DA15_B	0.241	0.128	0.055	-1.959	-12.101	9.757

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.