4TQR: Base Pair Morphology Step Parameters

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NDB ID: 4TQR PDB ID: 4TQR

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	PP_DA6DA7:DT12DT13_TT	-0.447	-0.272	3.238	-2.215	-0.495	36.8	-0.363	0.408	3.262	-0.783	3.504	36.867
1	7	PP_DA7DG8:DC11DT12_TT	1.259	0.207	3.296	2.802	-3.034	30.463	0.999	-1.814	3.36	-5.741	-5.302	30.735
1	10	PP_DA10DT11:DA8DT9_TT	-0.439	-0.541	3.204	-1.604	0.915	29.695	-1.241	0.525	3.205	1.784	3.126	29.751
1	1	PP_DG1DG2:DC17DC18_TT	0.831	0.243	3.35	2.449	2.417	34.052	0.018	-1.013	3.409	4.114	-4.169	34.22
1	2	PP_DG2DG3:DC16DC17_TT	-1.613	0.413	3.222	-7.254	6.09	34.815	-0.237	1.53	3.498	9.952	11.855	36.041
1	3	PP_DG3DG4:DC15DC16_TT	0.52	-0.279	3.36	0.212	6.531	34.219	-1.481	-0.836	3.256	10.976	-0.357	34.819
1	4	PP_DG4DG5:DC14DC15_TT	0.01	-0.476	3.261	0.643	8.755	29.69	-2.55	0.103	3.001	16.634	-1.221	30.932
1	5	PP_DG5DA6:DT13DC14_TT	-0.488	-0.236	3.249	-0.782	2.687	36.136	-0.753	0.676	3.233	4.324	1.258	36.241
1	8	PP_DG8DG9:DC10DC11_TT	-0.908	-0.094	3.433	-4.39	3.201	34.43	-0.675	0.806	3.496	5.367	7.359	34.843
1	9	PP_DG9DA10:DT9DC10_TT	0.079	-0.223	3.35	-1.644	-0.039	40.581	-0.317	-0.301	3.345	-0.056	2.369	40.613
1	11	PP_DT11DT12:DA7DA8_TT	-0.475	-0.198	3.147	1.957	4.671	30.705	-1.221	1.243	3.048	8.746	-3.665	31.11

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.