A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
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NDB ID: 4U3N  PDB ID: 4U3N 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14022_A39A40:G467C469_221.957-2.4393.817-6.643-9.471-6.94920.3081.3731.22248.39-33.944-13.489
14122_A40A41:U466G467_22-0.048-0.4423.586-2.25114.05465.622-0.999-0.0523.4412.8112.05266.979
14222_A41A438:G465U466_220.1020.3673.704-1.2541.18673.4950.263-0.133.7070.9911.04873.512
14922_A46G48:C431G432_22-3.131-2.2882.07566.258-126.828121.158-0.6881.832.102-65.405-34.169162.109
15322_A51G53:C427U440_225.695-0.5565.699-6.669-0.439169.361-0.278-2.8755.668-0.223.349169.379
15922_A67G69:U82G83_221.202-0.443.538-6.7312.08662.57-0.52-1.4713.3912.0026.45962.926
16122_A93A399:U395G396_22-2.122-0.0142.927-4.6594.42-2.579-9.899-28.133-0.328-46.901-49.433-6.92
18222_A103C309:G357U358_221.445-2.1493.194-10.395-0.19791.56-1.49-1.1953.058-0.1377.23492.018
18922_A108G109:C305U306_22-0.172-0.623.262-4.63610.05333.572-2.475-0.3872.95816.8457.76835.3
19322_A112U113:A301U302_22-0.939-1.2222.9011.61212.42820.777-5.9752.6331.81131.078-4.0324.229
19622_A119U120:U297C298_223.245-2.1252.523-18.112-4.83248.736-2.217-4.4731.499-5.6221.06752.01
110122_A124U125:G291U293_223.27-0.9653.831-8.69214.10249.362-2.105-4.3532.89716.36210.08551.902
110422_A162G163:G151U152_220.675-3.467-0.688-171.04936.487124.879-1.684-0.105-1.24918.30485.807177.64
110622_A164G165:C149U150_22-0.401-1.5973.6777.9296.33536.612-3.3251.7043.2149.854-12.33337.946
111022_A168A169:A145U146_220.152-0.8893.44613.308-7.37737.047-0.3741.453.412-11.055-19.94539.949
111122_A169A171:U144A145_222.304-2.4744.037-0.77317.5366.391-2.955-2.0823.34715.7270.69468.413
111222_A171C172:G143U144_221.92-1.6332.826-8.2032.69925.575-4.019-5.6871.9485.88717.89326.97
111422_A173U174:A266G142_22-1.573-2.5193.6253.754-3.56978.137-1.8851.3623.652-2.828-2.97578.281
111522_A182U183:A202U203_22-0.246-0.9792.7880.38518.63422.507-5.0030.5521.54240.051-0.82829.145
112022_A188C189:G196A197_220.9-1.3983.5626.138-1.31758.828-1.342-0.5653.659-1.337-6.2359.132
112422_A206U207:C258U259_220.577-1.7993.5943.88719.77830.367-5.538-0.4042.12433.52-6.58836.316
112822_A210U211:A254U255_220.599-1.7053.8126.7644.18432.768-3.7270.2363.6217.283-11.77533.694
113122_A213G214:A251U252_22-0.909-1.1143.2850.9713.61763.528-1.5960.8873.00412.778-0.9164.828
128322_A218U843:A829U830_220.306-0.784-4.135156.53921.426-128.6130.515-0.734-3.823-10.85779.324-170.509
113322_A220A221:U840U841_220.055-2.6613.7916.675-5.61523.733-4.032.3144.162-13.1-15.57125.264
113422_A221A222:U839U840_22-0.602-2.4172.91-3.69111.38528.709-6.1880.5811.89821.8027.06831.055
113522_A222U223:G838U839_220.802-1.283.0520.9027.16736.733-2.843-1.1432.7811.239-1.41437.413
113822_A225A226:U835U836_22-0.567-1.2253.675-2.1820.17827.694-5.3280.6132.31736.5793.95234.217
113922_A226U227:G834U835_220.957-1.4962.5437.033-2.49547.414-1.681-0.7282.721-3.08-8.68347.964
114222_A265U267:A288U289_22-1.617-0.92.7644.3171.15745.026-1.2542.4182.5841.506-5.6245.236
18722_A312A315:A352A353_225.124-0.6852.894-0.987-24.0611.8136.301-12.5730.692-85.6853.51324.148
115122_A316C317:G347U348_220.224-2.2183.3274.7256.10930.091-5.2680.452.83411.53-8.91731.044
115422_A323U324:A344U345_22-0.811-1.3143.256-0.66918.12238.741-3.4841.0542.44625.6770.94742.627
115922_A328G329:C339U340_220.265-1.5063.5598.6217.03532.805-3.6770.9563.14712.033-14.74634.592
116222_A366A367:U374U375_22-0.069-1.5682.702-3.8522.78431.087-3.315-0.4552.5455.1577.13631.439
116322_A367U368:G373U374_22-0.005-1.1622.9488.0118.25439.9-2.4060.7492.61911.802-11.45441.46
16222_A399A401:C394U395_22-0.245-1.8013.439-6.2834.56640.271-3.085-0.3563.2256.5589.02440.982
16322_A401G404:C393C394_223.788-1.2983.661-2.757-2.83670.997-1.008-3.3633.574-2.442.37271.093
16722_A407C408:G389G390_22-1.1751.6072.674.76.514-15.352-8.468-1.6442.085-22.48716.225-17.316
17022_A410C411:G422G423_221.173-1.1673.052-6.2481.63922.601-3.348-4.7222.5494.07515.53823.495
17222_A412U413:A420A421_22-1.951-2.5673.148-3.1556.55414.531-13.0684.9872.16524.04411.57416.241
14322_A438U439:A464G465_22-3.13-3.8233.05114.914-0.7224.325-13.99414.565-1.973-3.575-73.8515.541
14522_A441C442:G462U463_22-1.149-2.583.2642.271.28536.866-4.2382.113.1022.029-3.58436.955
15722_A452G63:C87U88_22-2.794-1.6183.0225.0997.29952.467-2.2063.42.538.189-5.72153.165
1122_A468G595:C31U32_221.72-2.8783.476-5.0822.83878.317-2.355-1.5053.2892.2444.01978.498
116822_A477A478:G510A511_22-1.518-2.5453.498-5.2194.81424.586-7.1771.883.19811.01411.94125.575
116922_A478C479:G509G510_220.368-1.3732.605-2.785-2.17423.862-2.725-1.6022.658-5.2226.68924.118
117222_A481A483:U504A505_22-1.256-3.8474.86118.42516.44740.391-6.4593.4122.44421.564-24.15747.073
117322_A483A485:U502U504_220.205-3.6036.559-11.4787.7863.533-3.994-1.1286.0197.29810.76664.873
117422_A485G486:U501U502_222.354-2.3254.64213.285.92517.224-9.3561.5894.33316.473-36.92422.506
117622_A515G516:C536G537_221.324-0.3763.621-8.106-5.12858.61-0.098-1.7843.447-5.28.2259.321
117722_A518A520:U532U533_22-2.15-1.7283.90118.5529.78842.496-3.5913.4071.48834.89-21.72754.589
117822_A520A521:C531U532_22-0.785-1.0733.6424.2615.1934.167-3.7281.7982.81724.312-6.81737.535
117922_A521U522:C530C531_22-0.478-1.7493.6281.1839.95645.045-3.1340.7183.1812.808-1.52246.091
118522_A550G557:C587U588_22-1.824-1.0682.9242.819-3.85841.624-1.1362.8142.883-5.408-3.95141.885
119222_A567G568:C575G576_220.459-1.7392.7526.58612.69645.275-2.973-0.1522.25516.026-8.31347.366
1622_A599U600:A26U27_220.788-1.4673.2773.863.22829.292-3.534-0.7323.1766.324-7.56229.711
1822_A601U602:G23U24_220.143-1.2853.3713.87811.10838.235-3.1370.2282.90216.488-5.75639.94
11122_A604C4:G20U21_22-3.079-1.4075.05720.4481.49753.961-1.5774.753.7271.587-21.67657.45
119722_A615G616:C1105U1106_22-0.142-1.8643.6094.1563.96328.185-4.6991.2773.2678.032-8.42328.752
119922_A622G1032:U1103U1104_221.03-3.5272.6225.6013.7023.61-33.743.1570.28734.055-51.537.621
126822_A746C747:G802U805_223.752-1.5724.44-27.105-1.37955.619-1.466-5.1292.566-1.3927.3261.409
127522_A760G761:A789U790_22-0.469-0.9553.6214.0094.62363.443-1.1250.6363.5194.385-3.80363.707
127722_A774G775:U785C786_220.833-4.702-0.786127.282-114.536-3.6050.871-1.234-3.78860.10966.798-171.232
128022_A814G816:A855U857_224.5081.072-0.159-118.925103.908134.50.624-2.161-1.1752.50760.095171.508
128522_A844G845:C827U828_22-1.062-1.4123.538-4.6466.4829.823-3.9931.0363.28912.3178.83130.847
121722_A865G866:C962U965_222.999-1.5343.2162.4055.68646.955-2.362-3.5443.1617.1-3.00347.337
122122_A869C870:G957U958_220.567-0.9033.1518.1646.57947.259-1.594-0.0823.0598.091-10.0448.343
123222_A881U882:U946U947_220.839-0.733.084-4.092-4.77245.159-0.547-1.4223.058-6.1795.29945.572
123522_A884G885:C927U928_22-0.021-1.0453.3935.73.60235.91-2.1760.8383.2365.779-9.14636.517
123822_A887U888:A924G925_220.398-0.7723.35-7.1292.95135.339-1.663-1.653.144.79111.57436.146
124222_A891A892:U920U921_22-0.653-1.1853.046-3.4146.15432.313-3.0290.6222.83110.8976.04533.05
124322_A892U893:A919U920_220.311-1.2183.109-2.2679.06333.514-3.286-0.8322.67315.3493.8434.756
128922_A900G902:A907U909_22-0.668-0.4325.9841.90320.62294.693-0.9380.5085.82313.893-1.28296.401
129022_A933U935:G876A944_222.6950.441-0.423-70.178150.79947.5520.598-1.18-0.84679.08836.806167.494
120422_A966A967:U632U633_22-1.335-1.9733.128-4.5756.95736.305-3.9491.5292.85710.9887.22637.216
120522_A967U968:G631U632_220.283-1.4323.3162.7964.71933.511-3.199-0.0433.1058.117-4.80933.944
120822_A970A971:G628U629_225.175-1.5323.419-6.743-3.9828.564-2.243-11.4122.35-7.88113.35229.596
120922_A971G972:C627G628_220.838-0.683.898-1.9138.51263.664-1.07-0.8853.7668.0291.80464.197
121122_A973A974:C625U626_22-0.12-1.4853.111-4.8745.64423.247-5.106-1.0912.65213.56511.71524.398
121222_A974C975:G624C625_220.212-1.6173.1033.3742.81138.098-2.7910.0712.9874.289-5.14838.341
129422_A979G980:C1021C1022_22-0.09-1.3614.059-3.37310.09551.012-2.363-0.1683.74411.5783.86852.038
129822_A983G984:U1017U1018_220.022-2.1243.0363.32819.49716.034-8.3740.5550.30950.609-8.63825.412
130322_A992A993:G1011U1012_22-5.357-1.4731.065-112.912-130.723-175.2540.751-2.6910.87365.364-56.458-179.699
130422_A993G994:C1010G1011_220.296-0.6663.138-5.8966.9756.238-1.064-0.6193.0017.346.2156.915
130622_A995U996:G1008U1009_220.206-1.8093.565-3.3067.22639.936-3.436-0.6773.17810.4544.78440.687
130922_A1036C1037:G1094U1095_221.298-1.8743.18-1.3385.67730.549-4.49-2.6562.73810.6522.51131.088
131122_A1061U1063:U1056U1058_226.151-4.0310.26869.948137.491-60.6361.7723.2770.827-74.35237.826-157.83
131422_A1065C1066:G1053U1054_220.992-2.043.2091.291-0.74635.397-3.244-1.4423.283-1.225-2.12135.428
131822_A1069C1070:G1048U1049_22-0.003-1.7963.351-1.785.17631.912-4.119-0.3043.0269.3293.20832.366
132522_A1076C1077:G1041G1042_221.325-1.453.159-0.596-3.20424.261-2.436-3.3083.287-7.581.41124.475
133522_A1113U1115:A1131A1132_222.713-1.9511.152122.727126.605-170.2420.9411.391.106-63.30761.368-179.688
133722_A1116U1117:U313G1130_22-3.283-2.1172.563-2.03310.32736.448-4.224.8672.08216.1023.1737.887
11622_A1138A1139:U8G16_22-2.518-1.553.2295.3611.5133.346-17.00634.013-0.77416.031-56.8096.497
11722_A1139G1140:C14U8_223.621-1.723.712-13.96612.13797.28-1.343-2.6283.1348.0329.24298.586
12022_A1142A1143:A11U12_220.016-1.7083.5730.1175.17341.398-2.977-0.013.3457.283-0.16441.706
12122_A1143U1144:G10A11_22-1.305-2.0743.2691.3651.57729.045-4.4622.8873.0923.139-2.71729.118
12522_A1147C1148:G1629U1630_220.115-1.3723.4570.18211.03631.227-4.256-0.1722.82319.744-0.32633.074
12822_A1151A1152:U1626U1627_22-0.858-1.7113.4280.072-1.15937.161-2.521.3563.476-1.818-0.11337.178
12922_A1152G1153:C1625U1626_22-0.246-1.2922.923-2.9512.68329.251-3.038-0.0692.8075.2815.80929.516
13422_A1157A1160:U1617U1621_224.951-0.1883.191-6.205-9.591114.084-0.012-3.0093.021-5.7073.693114.452
13522_A1160C1161:G1616U1617_22-0.096-1.1933.3684.4234.02728.805-3.2161.1413.1277.987-8.77129.407
136422_A1203A1556:U1552A1597_22-3.277-1.30.94785.083-156.965-10.9231.231-1.3240.50779.06342.856-178.548
137922_A1211G1212:C1451U1452_221.045-1.5573.9064.85914.25527.96-5.779-0.9162.92727.153-9.25531.687
138422_A1219C1220:G1263G1264_221.038-0.6253.652.9635.36565.99-0.812-0.8173.6344.915-2.71566.242
138622_A1221C1222:G1261U1262_220.131-0.8843.1160.5410.0828.52-3.556-0.1512.65819.698-1.05430.219
139122_A1234G1245:U1250U1251_222.34-2.3090.069-103.943-134.416177.321-1.154-1.1710.078-67.20951.972179.765
139322_A1236G1237:C1248U1249_220.932-1.1493.5812.4072.05131.384-2.532-1.2243.563.78-4.43631.539
140122_A1275U1276:A1436C1431_220.516-3.7483.5997.84619.63-27.051.8632.684.856-35.8314.322-34.209
141722_A1296G1297:A1300U1301_22-4.487-1.8533.0911.2769.31355.743-2.4244.8062.689.882-1.35456.468
142522_A1336A1410:G1387U1415_223.9754.3614.374118.41-36.83615.9333.5411.2223.154-25.482-81.914124.595
143022_A1344A1345:U1380U1381_22-0.9-0.6372.803-7.4246.38132.969-1.9470.5132.76710.94612.73634.353
143122_A1345A1348:U1377U1380_221.3751.5784.55810.7044.86298.6080.926-0.664.7083.198-7.04199.125
143222_A1348G1349:C1376U1377_220.005-1.6472.923-7.03213.227.761-4.982-1.0441.90825.31913.48831.463
144122_A1357G1358:C1365U1366_220.312-1.3863.2185.6520.32128.077-4.9640.221.85736.134-10.04734.989
144422_A1391U1392:A1406U1407_22-0.321-1.5773.3213.9886.10634.358-3.5021.1112.95110.194-6.65735.101
142622_A1410C1338:G1386G1387_222.9971.5170.305-121.134124.325138.9980.743-1.514-0.06662.30860.709177.753
136122_A1469C1470:G1574G1170_22-0.3240.2863.136-0.2542.65426.885-0.0380.6323.1525.6910.54427.015
145022_A1471G1474:C1533U1538_221.438-1.8576.9951.906-123.1565.7853.919-0.742.278-88.426-1.369123.249
145522_A1479G1480:C1527U1528_22-0.566-1.7163.686-1.32918.66328.431-5.8910.7592.19933.7712.40433.928
145722_A1487G1488:C1518U1519_220.728-1.3952.57-19.056-3.87428.477-1.905-3.4721.899-6.94534.16534.369
136522_A1556U1560:U1551U1552_223.7333.088-0.196162.76822.4417.7311.332-0.2414.0412.126-87.951164.496
137522_A1569A1570:G1541G1542_22-0.519-0.232.717-3.0564.1128.546-1.2150.4752.6988.2516.13628.993
137622_A1570C1571:G1540G1541_220.41-0.9113.293-6.7957.30264.449-1.146-0.663.1326.8046.33265.134
134322_A1576A1577:U1168G1169_221.507-1.4833.861-1.1457.82455.284-2.103-1.6863.6088.3841.22655.803
134422_A1577U1578:G1167U1168_220.261-1.3723.0266.9990.346.495-1.7440.2093.0240.377-8.80746.991
146722_A1586A1587:U1609G1610_22-0.701-0.3063.211-2.0263.35658.968-0.4790.6093.2123.4052.05559.086
146822_A1587G1588:U1608U1609_22-0.257-1.6213.545-4.65310.6932.763-4.379-0.2932.89918.2477.94234.722
147322_A1592A1593:U1603U1604_220.513-0.8733.311-1.5495.84746.875-1.563-0.7663.1697.3151.93847.242
147422_A1593G1594:C1602U1603_22-0.929-1.7993.0583.25410.83327.369-5.4032.3862.08821.754-6.53429.573
147722_A1719G1720:A1681U1682_220.792-0.9872.9879.43220.54107.355-0.841-0.3792.87612.659-5.813108.98
147922_A1721A1722:G1679G1680_22-0.426-0.2172.758-1.0278.95632.12-1.6260.62.61715.8021.81133.329
148022_A1722U1723:A1678G1679_221.68-1.1953.404-3.6748.29758.58-1.633-1.8883.1238.4243.73159.217
148622_A1728C1729:G1672G1673_220.831-1.1223.164-5.0895.01630.628-2.936-2.4122.7799.3379.47431.431
148822_A1730A1731:G1670A1671_220.684-2.1993.1576.9753.281-21.8374.364.0883.086-8.33317.715-23.142
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1225488_G39A40:A105A104_88-2.355-3.373.99314.323-12.561-129.691.968-1.1693.9466.9247.896-130.431
1225788_G42A43:U101U102_88-0.345-2.6922.708-9.115.16831.011-5.48-0.6152.2519.33716.46132.691
1226188_G46C47:G56C57_88-0.496-1.7413.257-1.275-3.64832.603-2.4370.6533.442-6.472.26232.825
1336788_G49C50:G75C76_880.262-1.3923.022-0.035.19534.699-3.005-0.4392.798.650.04935.074
1336888_G63U64:A96A97_88-0.516-2.9473.465-11.2543.96128.419-6.354-1.3013.0187.65521.7530.774
1337388_G68U69:A89C91_880.987-0.9712.9972.4912.35529.74-2.327-1.4382.9844.569-4.83429.933
1337588_G70A71:G87A88_880.253-1.754.5852.042-4.367-3.04445.71115.6951.01852.31124.458-5.701
1337688_G114C115:G107C108_88-0.538-2.3973.1133.324.36440.201-3.8991.1122.7976.313-4.80340.558
1337888_G116C117:G136C137_880.673-1.6783.067-2.5490.1736.285-2.71-1.4083.0070.2734.08736.372
1338588_G123G124:C129C130_88-0.42-1.4023.3588.06513.85634.832-3.7771.5952.49121.778-12.67638.24
1336988_U64A65:C94A96_883.722-1.8453.085-14.7593.13436.022-3.035-6.8461.3544.81622.68138.958
1337288_U67G68:C91A92_88-0.394-1.1453.5771.5332.63339.795-2.0060.7683.483.861-2.24839.907
1337488_U69G70:A88A89_880.0761.2842.69-2.16517.7657.9590.512-0.1692.93217.8672.17860.428
1338388_U121U122:A131G132_880.747-2.3833.1226.19511.8319.75-8.864-0.1961.61630.403-15.92223.804
1338488_U122G123:C130A131_880.019-1.2753.282-3.54811.17927.464-4.648-0.7262.55722.37.07829.819

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.