A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
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NDB ID: 4U3U  PDB ID: 4U3U 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14022_A39A40:G467C469_221.627-2.2383.475-8.062-9.714-5.89817.965-0.5410.85650.062-41.549-13.928
14122_A40A41:U466G467_22-0.094-0.3823.602-3.96612.81962.559-0.97-0.13.47312.1953.77363.839
14222_A41A438:G465U466_220.120.1593.683-1.4914.48475.443-0.022-0.1483.6843.6611.21875.569
15322_A46G48:C431G432_22-2.615-2.4612.46269.39-132.9897.949-0.4341.7522.51-69.657-36.348160.435
15722_A51G53:C427U440_225.459-0.6395.856-4.421.213170.629-0.323-2.7485.8380.6092.217170.636
16322_A67G69:U82G83_221.077-0.4513.694-3.3017.27858.182-0.881-1.293.5597.4463.37758.681
16522_A93A399:U395G396_22-1.904-0.0683.044-5.4646.093-4.931-8.604-19.5190.528-43.909-39.378-9.552
18322_A103C309:G357U358_221.219-2.1423.158-6.9072.36794.973-1.49-0.9413.0451.6044.6895.186
18222_A105A103:U358C308_223.894-4.765-2.24941.32791.54823.236-0.598-3.609-3.22973.355-33.114102.385
19022_A108G109:C305U306_22-0.388-1.0183.262-3.96811.87130.642-3.7020.0432.7221.3787.14633.043
19422_A112U113:A301U302_22-1.233-1.3313.0560.81315.6827.512-4.852.3891.9930.068-1.55931.602
19722_A119U120:U297C298_222.921-1.5493.258-10.4575.64747.833-2.234-4.1992.4216.84212.6749.203
110222_A124U125:U292U293_220.505-0.8723.592.9558.29244.137-1.948-0.3733.40610.906-3.88744.964
110622_A162G163:G151U152_220.859-3.312-0.38-177.27326.682112.882-1.624-0.215-1.05913.3588.697179.596
110822_A164G165:C149U150_220.253-1.7793.4863.6395.05435.252-3.6460.1293.2188.265-5.95135.781
111222_A168A169:A145U146_220.144-0.9673.36312.17-1.77834.499-1.2851.5253.271-2.886-19.75836.563
111322_A169A171:U144A145_222.256-2.4353.862.06111.45970.014-2.553-1.8643.5349.918-1.78470.854
111422_A171C172:G143U144_221.954-1.7732.946-8.0097.06124.445-5.208-5.7841.66615.75117.86426.643
111622_A173U174:A266G142_22-1.68-2.4193.2854.756-5.978.57-1.741.4553.341-4.649-3.74878.876
111722_A182U183:A202U203_22-0.007-1.3283.0471.74812.49123.062-5.7320.4082.05928.657-4.0126.244
112322_A188C189:G196A197_220.99-0.9243.3392.613-3.04260.516-0.763-0.8513.413-3.015-2.58960.636
112822_A206U207:C258U259_220.554-1.5833.5520.92520.07233.903-4.674-0.7172.3131.251-1.4439.259
113222_A210U211:A254U255_220.707-1.7573.5624.546.73233.616-4.054-0.4513.22611.433-7.71134.555
113522_A213G214:A251U252_22-0.83-1.0643.211-0.49111.28162.356-1.4920.773.00410.8010.4763.269
115222_A265U267:A288U289_22-1.655-0.8062.942-0.083.21445.645-1.2872.1222.8844.1370.10345.752
18822_A312A315:A352A353_225.154-0.5143.0485.613-21.7856.8458.663-10.0962.599-70.974-18.28723.502
116022_A316C317:G347U348_220.206-2.1043.2743.1735.67730.357-4.9660.1922.8510.688-5.97331.03
116322_A323U324:A344U345_22-1.056-1.253.181-6.85217.28637.757-3.4150.8142.54624.9499.88941.937
116822_A328G329:C339U340_220.319-1.9383.4415.3679.15128.521-5.4820.4392.71717.813-10.44830.391
117122_A366A367:U374U375_22-0.073-1.5312.876-2.0340.35235.606-2.545-0.1392.8610.5743.32335.664
117222_A367U368:G373U374_220.273-1.3732.9965.2877.98937.058-2.9810.1692.66712.319-8.15338.235
16622_A399A401:C394U395_22-0.057-1.7153.051-7.128-1.13738.88-2.411-0.7053.061-1.6910.59739.518
16722_A401G404:C393C394_223.41-1.353.7211.067-0.40375.059-1.094-2.7613.768-0.331-0.87675.066
17122_A407C408:G389G390_22-1.0891.3282.8662.0757.756-13.356-9.639-2.7531.946-30.0528.04-15.574
17422_A410C411:G422G423_221.153-1.0623.027-7.8245.14723.675-3.652-4.5042.25911.96318.18325.435
14322_A438U439:A464G465_22-3.566-3.4142.81515.6031.0969.633-10.83413.042-1.7464.102-58.41918.354
14522_A441C442:G462U463_22-0.957-2.623.334-6.4038.26631.285-5.9570.6532.71114.81911.47932.945
16122_A452G63:C87U88_22-2.844-1.9682.872.1533.85953.268-2.3933.2772.6244.296-2.39753.438
1122_A468G595:C31U32_221.587-2.8393.513-6.5847.77881.844-2.354-1.3733.175.9175.00882.365
117622_A475U476:A545A594_222.5582.6942.605-0.4897.459173.9551.344-1.2812.6133.7350.245173.968
117722_A477A478:G510A511_22-0.356-2.6513.555-1.5635.66526.623-7.0520.3622.95412.1143.34227.252
117822_A478C479:G509G510_220.092-1.1222.876-1.947-8.17631.625-0.689-0.4733.052-14.683.49732.695
117922_A481A483:U504A505_22-1.372-3.9674.89710.58914.62743.112-6.5792.8653.06718.945-13.71546.575
118022_A483A485:U502U504_220.2-3.6676.31-10.551-1.82860.913-3.407-1.1496.3-1.78810.32161.758
118122_A485G486:U501U502_222.124-2.2534.66515.0939.96923.335-7.6130.6384.03421.056-31.87829.448
118422_A515G516:C536G537_220.984-0.5453.745-5.8837.21258.192-0.972-1.3423.5557.3646.00758.867
118622_A518A520:U532U533_22-2.385-1.4353.8019.77621.87545.522-3.1943.4472.39426.242-11.72751.144
118722_A520A521:C531U532_22-0.807-1.753.7498.5337.48433.925-4.0042.6273.02312.403-14.14135.72
118822_A521U522:C530C531_22-0.491-1.5683.5667.1318.58250.735-2.3961.0623.1889.878-8.20951.868
119422_A550G557:C587U588_22-1.541-1.1393.294.3342.52945.113-1.6952.3723.0723.284-5.62845.377
1622_A599U600:A26U27_220.681-0.9823.0362.8045.76629.869-2.908-0.7862.85111.026-5.36330.534
1822_A601U602:G23U24_22-0.296-1.0763.3961.90712.36637.667-3.0180.6572.89818.538-2.85939.619
11122_A604C4:G20U21_22-2.913-1.1215.03630.103-0.65453.274-1.0674.8583.144-0.672-30.95560.648
120422_A615G616:C1105U1106_22-0.01-1.9283.4131.1628.38332.761-4.6320.1992.84514.562-2.01933.808
120622_A622G1032:U1103U1104_221.056-3.1553.0947.8174.9776.559-21.8873.981.13529.422-46.21411.349
127422_A746C747:G802U805_223.574-1.0364.504-31.1873.71658.172-1.134-4.7752.4443.55429.83365.45
128122_A760G761:A789U790_22-0.724-0.5533.8171.9881.2264.444-0.5780.7773.7861.143-1.86464.482
128322_A774G775:U785C786_221.272-4.743-1.226132.203-113.188-30.2011.014-0.952-4.2358.02767.776-174.244
128622_A814G816:A855U857_224.6970.9210.151-120.46109.26150.8990.478-2.331-0.56554.81460.433175.652
128822_A817G819:G853U854_22-1.113-0.4525.00336.32746.45331.395-3.1713.1761.57650.753-39.68966.137
115022_A844G845:C827U828_22-0.71-1.5433.4442.8984.82331.693-3.6541.8033.1068.744-5.25432.176
122422_A865G866:C962U965_222.636-1.4933.1473.2061.30349.055-1.89-2.9323.2641.567-3.85549.169
122822_A869C870:G957U958_220.713-1.2353.3782.6067.52646.859-2.147-0.6733.1889.383-3.24947.494
123922_A881U882:U946U947_220.651-0.7472.882-4.655-2.48643.171-0.797-1.2742.837-3.3636.29943.477
124222_A884G885:C927U928_22-0.214-1.1553.4037.3126.36332.093-3.0561.5783.00611.195-12.86433.488
124522_A887U888:A924G925_220.093-0.7043.233-2.0366.63237.344-1.903-0.3953.05910.253.14637.96
124922_A892U893:A919U920_220.421-1.3943.1451.31513.10931.16-4.276-0.5372.39723.15-2.32333.767
129422_A900G902:A907U909_22-0.983-0.7026.55214.05323.40194.531-1.2481.1236.16615.683-9.41897.485
129522_A933U935:G876A944_220.245-2.9-0.351148.43175.687-133.3091.4630.1010.111-38.0974.7-174.706
121122_A966A967:U632U633_22-1.209-1.8843.219-1.9534.6134.624-3.8011.7293.0127.6963.26134.974
121222_A967U968:G631U632_220.298-1.2553.3660.4757.52136.267-2.98-0.4063.05811.924-0.75437.016
121522_A970A971:G628U629_225.609-1.5273.261-1.858-1.46933.26-2.427-10.0723.015-2.5633.24233.342
121622_A971G972:C627G628_220.731-0.93.842-0.60811.9664.867-1.389-0.7013.63911.0510.56265.844
121822_A973A974:C625U626_220.02-1.3743.048-6.4686.92225.664-4.42-1.4562.51814.95113.96927.329
121922_A974C975:G624C625_220.008-1.4373.061.4931.35842.6-2.1020.1293.0141.867-2.05342.645
129922_A979G980:C1021C1022_22-0.127-1.0413.902-2.81814.31348.096-2.421-0.0853.48117.1093.36950.133
130322_A983G984:U1017U1018_220.424-1.9973.0831.94814.12416.191-9.461-0.5661.0641.22-5.68421.542
130822_A992A993:G1011U1012_22-4.788-0.7033.046-114.942-130.814-123.1280.729-2.7270.92565.672-57.704-177.21
130922_A993G994:C1010G1011_220.207-0.6073.316-4.897.34656.921-1.028-0.483.1967.6565.09757.544
131122_A995U996:G1008U1009_220.569-1.4983.244-1.772.35639.278-2.494-1.0493.1253.4992.62939.384
131322_A1036C1037:G1094U1095_220.728-1.7853.3223.2871.7333.272-3.389-0.7163.2833.01-5.71833.473
131522_A1061U1063:U1056U1058_226.108-2.8471.23462.463143.182-92.9661.0283.2641.018-74.53332.515-163.684
131822_A1065C1066:G1053U1054_220.822-1.9433.2881.334.58439.841-3.343-1.053.086.698-1.94340.114
132222_A1069C1070:G1048U1049_220.58-1.7153.2550.7575.32831.142-4.092-0.9322.9419.832-1.39731.592
132922_A1076C1077:G1041G1042_221.248-1.1532.8712.371-0.7130.069-2.085-1.9652.984-1.366-4.5630.169
133922_A1113U1115:A1131A1132_222.682-2.0161.266119.413131.068-140.5350.8571.4791.085-65.59259.76-179.091
134122_A1116U1117:U313G1130_22-3.731-1.9362.389-3.3898.89535.86-3.8965.5462.19514.1425.38737.061
11622_A1138U8:U15G16_22-0.8470.193.039-1.2482.1313.226-1.2712.3973.0969.1445.35713.453
12022_A1142A1143:A11U12_220.201-1.6473.6812.0176.00137.992-3.309-0.0323.3989.141-3.07338.497
12122_A1143U1144:G10A11_22-1.013-1.9173.381-2.7574.1830.901-4.351.3523.1777.785.13131.295
12522_A1147C1148:G1629U1630_22-0.07-1.3043.2132.46911.00429.545-4.2630.5472.56120.655-4.63531.579
12822_A1151A1152:U1626U1627_22-0.792-1.4873.314-1.525-0.0334.093-2.5291.1043.347-0.0512.634.126
12922_A1152G1153:C1625U1626_22-0.23-1.6372.831-3.508-0.33829.55-3.127-0.1932.856-0.666.84829.755
13422_A1157A1160:U1617U1621_224.9880.0483.736-7.57-6.51115.3850.105-3.0363.521-3.8474.474115.66
13522_A1160C1161:G1616U1617_220.117-0.8723.3770.046-0.48434.182-1.404-0.1923.389-0.823-0.07934.185
136822_A1203A1556:U1552G1553_22-0.757-3.397-3.237161.256-52.14588.975-2.042-0.673-2.042-26.555-82.121172.498
138322_A1211G1212:C1451U1452_221.056-1.5383.7272.57114.59922.835-7.04-1.5852.42432.806-5.77727.171
138822_A1219C1220:G1263G1264_220.605-0.613.714-0.575-3.70365.847-0.389-0.5833.735-3.4030.52865.941
139022_A1221C1222:G1261U1262_220.173-0.8813.3163.3273.11932.64-2.0870.2633.2225.516-5.88332.948
139222_A1223A1224:U1259U1260_220.275-1.8883.50810.93215.94234.439-4.6430.8532.41724.669-16.91639.35
139622_A1234G1245:U1250U1251_222.4212.182-0.792136.619-100.533-40.374-1.4440.741-0.89152.27871.043-170.261
139822_A1236G1237:C1248U1249_220.7-1.3653.5550.2967.81130.169-4.09-1.2453.11814.699-0.55831.143
140022_A1238U1239:C1246U1247_222.501-2.312.8726.1111.5598.881-1.672-1.5552.7747.577-4.00999.517
140722_A1275U1276:A1436C1431_220.739-3.9663.4075.90517.787-21.3582.123.4934.887-39.56413.134-28.343
142322_A1296G1297:A1300U1301_22-4.097-1.9073.323.19810.7956.418-2.5314.4252.72811.288-3.34657.439
143122_A1336A1410:G1387U1415_224.9143.9493.88117.343-35.3746.0863.4381.143.793-25.496-84.574122.647
143622_A1344A1345:U1380U1381_22-0.87-0.8333.046-1.0491.48133.464-1.6721.3493.0332.571.8233.512
143722_A1345A1348:U1377U1380_221.7871.8114.20514.8890.86198.6571.169-0.8594.3890.565-9.77599.487
143822_A1348G1349:C1376U1377_220.079-1.5783.148-1.57815.80327.119-5.418-0.3951.94730.5983.05531.351
144722_A1357G1358:C1365U1366_22-0.039-1.6342.9035.01612.97528.515-4.8750.7971.95924.579-9.50231.663
144922_A1388A1391:U1407G1409_22-6.868-0.64-0.65993.949-147.899-137.0030.31-3.4410.53874.0947.064-178.247
145022_A1391U1392:A1406U1407_22-0.496-1.673.4733.8799.26536.06-3.8171.2822.90414.621-6.12137.387
143222_A1410C1338:G1386G1387_222.6941.5420.814-123.362125.753102.0030.651-1.4650.13863.18261.981177.583
136522_A1469C1470:G1574G1170_220.0170.3573.23-2.6274.34423.56-0.534-0.883.22110.4826.3424.093
145622_A1471C1472:G1536U1538_221.681-2.783.8-10.88419.866-75.5871.4830.9374.481-15.873-8.697-78.419
145922_A1475C1476:G1531U1532_220.848-1.4813.1265.4775.42237.217-2.927-0.6452.988.385-8.47137.979
146322_A1479G1480:C1527U1528_22-0.521-1.9863.8391.9998.94228.11-5.9441.483.03417.821-3.98429.537
146522_A1487G1488:C1518U1519_220.564-1.4532.866-11.09-3.10125.181-2.386-3.5192.553-6.68423.90727.65
136922_A1556U1560:U1551U1552_223.5853.0720.676163.97425.55249.5861.318-0.3453.92513.402-86.004167.253
137922_A1569A1570:G1541G1542_22-0.419-0.122.671-7.1315.74227.366-1.305-0.4792.61611.72914.56428.829
138022_A1570C1571:G1540G1541_220.416-0.5823.357-7.2174.57167.308-0.699-0.6523.2634.1076.48467.784
134722_A1576A1577:U1168G1169_221.662-1.2493.6370.4927.22456.926-1.731-1.7033.4817.545-0.51457.346
134822_A1577U1578:G1167U1168_22-0.029-1.3823.2651.5820.37445.847-1.8050.1743.2510.48-2.0345.875
147522_A1586A1587:U1609G1610_22-0.272-0.6553.129-6.8214.22357.389-0.892-0.0673.0894.3747.06557.9
147622_A1587G1588:U1608U1609_22-0.18-1.6233.7321.1228.3738.74-3.4630.4083.31812.438-1.66839.616
148122_A1592A1593:U1603U1604_220.528-1.0923.608-1.4758.62538.678-2.686-0.9643.27812.8232.19339.619
148222_A1593G1594:C1602U1603_22-0.896-1.5592.969-2.6815.99133.984-3.4331.1442.72310.1334.53434.594
148522_A1719G1720:A1681U1682_220.547-1.4242.9768.14215.225106.314-1.063-0.2442.8469.472-5.066107.284
148722_A1721A1722:G1679G1680_22-0.42-0.6642.831-3.156.84128.526-2.5440.2542.63413.5866.25629.484
148822_A1722U1723:A1678G1679_221.738-0.9333.4410.7645.061.282-1.158-1.6633.3824.897-0.74961.47
149422_A1728C1729:G1672G1673_220.749-0.8953.099-3.8555.89530.771-2.642-2.032.77210.937.14931.548
149622_A1730A1731:G1670A1671_220.586-2.0323.1723.6-2.2-20.8876.332.9482.8055.999.802-21.304
149722_A1731A1732:U1669G1670_220.624-0.7723.487-1.2788.68756.599-1.304-0.7253.3329.1011.33957.22
149822_A1732C1733:G1668U1669_22-0.727-1.1943.1970.6495.04936.657-2.5281.2282.9997.98-1.02536.997
150622_A1740U1741:A1660U1661_220.51-1.2173.1380.0633.68331.736-2.837-0.9172.9826.707-0.11531.944
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1335777_U59G60:C19A20_77-0.058-1.4812.9852.5294.14629.247-3.6650.5842.7398.139-4.96529.639
1336077_U62A63:U16A17_77-0.339-1.0123.3343.27324.91627.383-4.6480.9351.7942.91-5.63737.003
1336777_U70G71:C107A108_770.13-1.6282.8741.1851.38931.874-3.178-0.0492.8052.526-2.15631.925
1337377_U78A79:G101A102_775.163-1.4813.599-0.4634.387-9.631-1.01627.0164.11-24.509-2.584-10.591
1337677_U81G82:C98G99_77-2.009-2.6133.179-5.41213.3513.278-12.5883.9240.94144.06417.86219.567
1337877_U83A84:U96A97_770.074-2.0713.6764.69519.47737.652-4.8070.3682.36727.898-6.72542.479
1226488_A37G39:A104C106_88-0.5382.4192.187-7.40521.279135.8341.210.2572.37411.4583.987136.729
1226688_A40A41:G103A105_88-0.341-0.3063.1-1.127-5.685120.732-0.1260.1863.109-3.2690.648120.815
1226788_A41G42:U102G103_880.985-0.6473.663-8.27711.89357.285-1.322-1.4643.32312.1918.48558.939
1226988_A43A44:U100U101_88-0.335-1.6983.554.6782.63837.919-2.9411.1353.3654.035-7.15538.283
1227088_A44C45:G58U100_880.415-1.3842.969-4.1531.6738.04-2.296-1.0972.8482.5526.34538.293
1339588_A65A66:U93C94_88-0.266-0.73.296-3.7251.5549.932-0.940.0433.2841.8324.40550.084
1339688_A66U67:A92U93_88-0.358-1.3063.524-3.0785.56840.326-2.520.1553.348.0164.43140.804
1227188_C45G46:C57G58_881.157-1.6023.2052.3494.15731.898-3.595-1.6823.0527.511-4.24432.244
1227388_C47C62:U55G56_88-0.713-2.5273.31813.0411.19646.641-3.7671.7262.41913.61-15.85349.541
1340288_C115G116:C137G107_88-1.907-3.4653.2261.731-1.4056.004-24.43625.1743.269-12.845-15.8226.404
1340488_C117C118:G135G136_88-0.837-2.4063.099-2.4036.7727.361-6.2961.2272.50514.0084.97328.271
1340588_C118C119:G134G135_88-0.716-2.0863.145-0.66410.44329.709-5.5251.2142.31219.6161.24731.458
1340688_C119C120:G133G134_88-0.039-2.1273.541.1396.3928.831-5.5470.3223.00512.632-2.25129.538
1340788_C120U121:G132G133_880.276-1.8343.102-0.1585.85539.979-3.255-0.4152.8168.5080.22940.388
1226588_G39A40:A105A104_88-2.317-3.3433.8828.356-11.574-128.8061.953-1.2083.7956.4094.627-129.231
1226888_G42A43:U101U102_88-0.837-2.5493.232-9.874.04930.44-5.301-0.2162.9967.4318.11332.214
1227288_G46C47:G56C57_88-0.652-1.5143.216-1.827-0.07637.112-2.3660.7823.246-0.122.86837.156
1339288_G49C50:G75C76_880.381-1.292.801-1.6693.93932.023-2.899-0.932.6057.1013.00832.3
1339388_G63U64:A96A97_88-0.607-2.8533.696-11.9177.68232.615-5.885-0.8733.00212.94420.07935.486
1339888_G68U69:A89C91_880.996-1.0513.1472.1993.4133.705-2.324-1.3693.0865.855-3.77533.942
1340088_G70A71:G87A88_880.231-1.8824.7140.816-2.483-2.1180.32719.7911.51548.53415.955-3.359
1340188_G114C115:G107C108_88-0.218-2.3763.174-3.3334.31735.928-4.372-0.0852.8866.9495.36636.326
1340388_G116C117:G136C137_880.44-1.6073.124-3.0831.5838.96-2.58-1.0063.0172.3634.61139.107
1341088_G123G124:C129C130_880.369-1.8973.0716.0655.76329.96-4.5310.3552.6910.883-11.45431.08
1339488_U64A65:C94A96_883.778-1.8653.238-12.6922.53932.8-3.373-7.6891.5684.29421.46335.196
1339788_U67G68:C91A92_88-0.428-1.6193.4150.9367.7733.439-3.9480.8712.96313.279-1.59934.317
1339988_U69G70:A88A89_880.3541.3432.713-2.18112.55757.9570.803-0.4552.90812.7892.22159.223
1340888_U121U122:A131G132_880.251-2.4153.199.45415.12722.142-7.6411.1831.31133.293-20.80628.364
1340988_U122G123:C130A131_88-0.009-1.4773.419-5.8224.86728.559-3.943-1.2313.0729.65311.54629.529

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.