4U7B: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 4U7B PDB ID: 4U7B

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	C_DA9:DT48_D	0.34	-0.063	-0.053	9.712	-9.412	1.505
1	8	C_DA11:DT46_D	0.063	-0.136	0.592	3.126	-3.509	-0.961
1	9	C_DA12:DT45_D	0.267	-0.232	0.826	11.593	-17.423	-2.296
1	12	C_DA15:DT42_D	-0.237	0.091	-0.199	-5.716	-22.158	12.042
1	15	C_DA18:DT39_D	0.183	-0.021	-0.081	12.831	-18.097	-1.049
1	16	C_DA19:DT38_D	0.335	-0.113	0.148	5.075	-16.26	-8.021
1	17	C_DA20:DT37_D	0.027	-0.137	0.312	5.173	-12.697	-7.557
1	7	C_DC10:DG47_D	0.569	-0.188	0.61	1.286	-26.629	-2.757
1	21	C_DC24:DG33_D	0.782	-0.341	-0.019	4.563	-5.586	0.871
1	1	C_DG4:DC53_D	-0.889	-0.045	-0.277	-40.089	0.015	0.361
1	2	C_DG5:DC52_D	0.101	0.295	-1.021	-24.0	0.967	8.741
1	4	C_DG7:DC50_D	-0.274	-0.163	-0.251	-8.733	-2.367	1.02
1	10	C_DG13:DC44_D	-0.171	-0.15	0.609	-1.438	-11.592	-2.415
1	14	C_DG17:DC40_D	-0.099	-0.12	-0.447	-1.033	-1.315	0.037
1	19	C_DG22:DC35_D	0.072	0.268	-0.114	-10.578	-4.954	1.005
1	22	C_DG25:DC32_D	0.646	-0.162	0.042	0.483	-10.893	-3.983
1	3	C_DT6:DA51_D	0.662	0.208	-0.309	-0.618	-8.119	3.03
1	5	C_DT8:DA49_D	-0.096	-0.107	-0.346	9.585	-7.414	-0.215
1	11	C_DT14:DA43_D	-0.459	-0.065	0.155	-6.628	-7.61	-7.251
1	13	C_DT16:DA41_D	-0.287	-0.086	-0.078	-10.085	-16.512	-3.294
1	18	C_DT21:DA36_D	0.477	-0.132	0.273	3.035	-11.548	3.305
1	20	C_DT23:DA34_D	-0.228	-0.208	0.036	-7.112	-8.784	1.882
1	23	C_DT26:DA31_D	-0.246	-0.088	0.277	-5.597	-11.342	-3.186
1	24	C_DT27:DA30_D	0.052	-0.126	-0.043	-5.934	-16.843	-2.689
1	25	C_DT28:DA29_D	-0.126	-0.142	0.053	-6.678	-5.995	-4.875
1	31	E_DA9:DT48_F	0.635	-0.266	-0.19	8.313	-14.5	-0.997
1	33	E_DA11:DT46_F	0.735	-0.236	0.306	3.787	-9.099	-3.229
1	34	E_DA12:DT45_F	0.155	-0.161	0.735	9.62	-22.119	-5.47
1	37	E_DA15:DT42_F	-0.105	0.029	0.733	4.636	-10.55	5.96
1	40	E_DA18:DT39_F	0.121	-0.152	-0.179	7.254	-14.43	-2.812
1	41	E_DA19:DT38_F	0.081	-0.063	-0.231	0.005	-22.022	-4.834
1	42	E_DA20:DT37_F	-0.309	-0.005	-0.536	-2.398	-16.115	7.989
1	32	E_DC10:DG47_F	0.205	-0.215	0.072	1.654	-17.441	-0.071
1	46	E_DC24:DG33_F	0.647	-0.239	-0.054	10.159	-14.725	3.152
1	26	E_DG4:DC53_F	0.29	-0.123	-0.664	16.776	0.43	-0.83
1	27	E_DG5:DC52_F	-0.361	-0.086	-0.755	-20.999	-7.823	1.402
1	29	E_DG7:DC50_F	-0.575	-0.188	-0.359	-16.917	-6.286	-1.434
1	35	E_DG13:DC44_F	0.162	-0.356	0.654	-2.172	-18.639	-5.536
1	39	E_DG17:DC40_F	0.085	0.072	-0.446	0.951	2.511	2.207
1	44	E_DG22:DC35_F	-0.481	-0.126	-0.157	-9.802	-17.029	2.624
1	47	E_DG25:DC32_F	1.443	0.453	0.95	11.943	-16.116	0.215
1	28	E_DT6:DA51_F	0.076	0.048	-0.011	-8.252	-10.146	0.431
1	30	E_DT8:DA49_F	-0.089	-0.133	-0.049	0.45	-5.134	1.085
1	36	E_DT14:DA43_F	0.063	-0.227	0.767	-13.208	-9.942	-3.066
1	38	E_DT16:DA41_F	-0.655	-0.087	0.456	-9.781	-9.759	-1.025
1	43	E_DT21:DA36_F	-0.324	0.084	0.053	2.209	-11.946	1.072
1	45	E_DT23:DA34_F	-0.25	-0.161	0.018	2.527	-10.828	-6.828
1	48	E_DT26:DA31_F	-0.092	0.002	1.021	-17.612	-13.727	4.127
1	49	E_DT28:DA29_F	-0.149	-0.071	0.618	-7.062	-36.59	-9.027
1	55	H_DA9:DT48_I	0.746	0.002	-0.061	3.897	-8.453	-4.361
1	57	H_DA11:DT46_I	-0.227	-0.113	0.09	-2.98	-8.411	2.025
1	58	H_DA12:DT45_I	-0.129	-0.204	0.497	10.582	-16.945	-2.07
1	61	H_DA15:DT42_I	-0.151	0.12	0.244	-2.682	-14.399	8.419
1	64	H_DA18:DT39_I	0.481	-0.265	-0.24	4.464	-14.388	-6.724
1	65	H_DA19:DT38_I	0.09	0.03	0.013	2.0	-12.222	-1.794
1	66	H_DA20:DT37_I	0.144	-0.016	0.431	13.024	-11.86	-2.18
1	56	H_DC10:DG47_I	-0.323	0.072	0.37	2.734	-21.649	-0.311
1	70	H_DC24:DG33_I	0.897	-0.565	-0.123	13.372	-8.518	0.59
1	50	H_DG4:DC53_I	-0.25	-0.411	-0.152	8.141	-10.878	-5.773
1	51	H_DG5:DC52_I	-0.652	-0.419	-0.34	-8.232	-11.882	-1.689
1	53	H_DG7:DC50_I	-0.269	-0.295	-0.372	-12.245	-1.394	-1.926
1	59	H_DG13:DC44_I	0.241	-0.232	0.639	-6.355	-17.495	-9.523
1	63	H_DG17:DC40_I	0.162	-0.052	-0.058	0.001	-1.398	-2.381
1	68	H_DG22:DC35_I	-0.059	-0.445	-0.274	-4.315	-6.264	-3.166
1	71	H_DG25:DC32_I	0.648	0.167	0.683	7.556	-12.619	-0.719
1	52	H_DT6:DA51_I	-0.123	-0.182	-0.428	-3.76	-14.843	1.301
1	54	H_DT8:DA49_I	-0.29	-0.347	-0.147	0.19	0.082	0.883
1	60	H_DT14:DA43_I	-0.216	-0.02	0.581	-17.279	-13.197	-0.476
1	62	H_DT16:DA41_I	-0.47	-0.334	0.409	-10.973	-11.415	-5.369
1	67	H_DT21:DA36_I	-0.375	-0.211	-0.069	4.227	-6.984	4.721
1	69	H_DT23:DA34_I	-0.392	-0.214	-0.217	-0.22	-10.943	-9.29
1	72	H_DT26:DA31_I	0.247	-0.339	0.829	-7.737	-13.669	-2.393
1	73	H_DT27:DA30_I	0.041	-0.3	0.541	-10.668	-14.369	-0.831
1	74	H_DT28:DA29_I	0.045	-0.086	0.336	-11.623	-16.731	-8.243

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.