A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 4U7B  PDB ID: 4U7B 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16C_DA9:DT48_D0.34-0.063-0.0539.712-9.4121.505
18C_DA11:DT46_D0.063-0.1360.5923.126-3.509-0.961
19C_DA12:DT45_D0.267-0.2320.82611.593-17.423-2.296
112C_DA15:DT42_D-0.2370.091-0.199-5.716-22.15812.042
115C_DA18:DT39_D0.183-0.021-0.08112.831-18.097-1.049
116C_DA19:DT38_D0.335-0.1130.1485.075-16.26-8.021
117C_DA20:DT37_D0.027-0.1370.3125.173-12.697-7.557
17C_DC10:DG47_D0.569-0.1880.611.286-26.629-2.757
121C_DC24:DG33_D0.782-0.341-0.0194.563-5.5860.871
11C_DG4:DC53_D-0.889-0.045-0.277-40.0890.0150.361
12C_DG5:DC52_D0.1010.295-1.021-24.00.9678.741
14C_DG7:DC50_D-0.274-0.163-0.251-8.733-2.3671.02
110C_DG13:DC44_D-0.171-0.150.609-1.438-11.592-2.415
114C_DG17:DC40_D-0.099-0.12-0.447-1.033-1.3150.037
119C_DG22:DC35_D0.0720.268-0.114-10.578-4.9541.005
122C_DG25:DC32_D0.646-0.1620.0420.483-10.893-3.983
13C_DT6:DA51_D0.6620.208-0.309-0.618-8.1193.03
15C_DT8:DA49_D-0.096-0.107-0.3469.585-7.414-0.215
111C_DT14:DA43_D-0.459-0.0650.155-6.628-7.61-7.251
113C_DT16:DA41_D-0.287-0.086-0.078-10.085-16.512-3.294
118C_DT21:DA36_D0.477-0.1320.2733.035-11.5483.305
120C_DT23:DA34_D-0.228-0.2080.036-7.112-8.7841.882
123C_DT26:DA31_D-0.246-0.0880.277-5.597-11.342-3.186
124C_DT27:DA30_D0.052-0.126-0.043-5.934-16.843-2.689
125C_DT28:DA29_D-0.126-0.1420.053-6.678-5.995-4.875
131E_DA9:DT48_F0.635-0.266-0.198.313-14.5-0.997
133E_DA11:DT46_F0.735-0.2360.3063.787-9.099-3.229
134E_DA12:DT45_F0.155-0.1610.7359.62-22.119-5.47
137E_DA15:DT42_F-0.1050.0290.7334.636-10.555.96
140E_DA18:DT39_F0.121-0.152-0.1797.254-14.43-2.812
141E_DA19:DT38_F0.081-0.063-0.2310.005-22.022-4.834
142E_DA20:DT37_F-0.309-0.005-0.536-2.398-16.1157.989
132E_DC10:DG47_F0.205-0.2150.0721.654-17.441-0.071
146E_DC24:DG33_F0.647-0.239-0.05410.159-14.7253.152
126E_DG4:DC53_F0.29-0.123-0.66416.7760.43-0.83
127E_DG5:DC52_F-0.361-0.086-0.755-20.999-7.8231.402
129E_DG7:DC50_F-0.575-0.188-0.359-16.917-6.286-1.434
135E_DG13:DC44_F0.162-0.3560.654-2.172-18.639-5.536
139E_DG17:DC40_F0.0850.072-0.4460.9512.5112.207
144E_DG22:DC35_F-0.481-0.126-0.157-9.802-17.0292.624
147E_DG25:DC32_F1.4430.4530.9511.943-16.1160.215
128E_DT6:DA51_F0.0760.048-0.011-8.252-10.1460.431
130E_DT8:DA49_F-0.089-0.133-0.0490.45-5.1341.085
136E_DT14:DA43_F0.063-0.2270.767-13.208-9.942-3.066
138E_DT16:DA41_F-0.655-0.0870.456-9.781-9.759-1.025
143E_DT21:DA36_F-0.3240.0840.0532.209-11.9461.072
145E_DT23:DA34_F-0.25-0.1610.0182.527-10.828-6.828
148E_DT26:DA31_F-0.0920.0021.021-17.612-13.7274.127
149E_DT28:DA29_F-0.149-0.0710.618-7.062-36.59-9.027
155H_DA9:DT48_I0.7460.002-0.0613.897-8.453-4.361
157H_DA11:DT46_I-0.227-0.1130.09-2.98-8.4112.025
158H_DA12:DT45_I-0.129-0.2040.49710.582-16.945-2.07
161H_DA15:DT42_I-0.1510.120.244-2.682-14.3998.419
164H_DA18:DT39_I0.481-0.265-0.244.464-14.388-6.724
165H_DA19:DT38_I0.090.030.0132.0-12.222-1.794
166H_DA20:DT37_I0.144-0.0160.43113.024-11.86-2.18
156H_DC10:DG47_I-0.3230.0720.372.734-21.649-0.311
170H_DC24:DG33_I0.897-0.565-0.12313.372-8.5180.59
150H_DG4:DC53_I-0.25-0.411-0.1528.141-10.878-5.773
151H_DG5:DC52_I-0.652-0.419-0.34-8.232-11.882-1.689
153H_DG7:DC50_I-0.269-0.295-0.372-12.245-1.394-1.926
159H_DG13:DC44_I0.241-0.2320.639-6.355-17.495-9.523
163H_DG17:DC40_I0.162-0.052-0.0580.001-1.398-2.381
168H_DG22:DC35_I-0.059-0.445-0.274-4.315-6.264-3.166
171H_DG25:DC32_I0.6480.1670.6837.556-12.619-0.719
152H_DT6:DA51_I-0.123-0.182-0.428-3.76-14.8431.301
154H_DT8:DA49_I-0.29-0.347-0.1470.190.0820.883
160H_DT14:DA43_I-0.216-0.020.581-17.279-13.197-0.476
162H_DT16:DA41_I-0.47-0.3340.409-10.973-11.415-5.369
167H_DT21:DA36_I-0.375-0.211-0.0694.227-6.9844.721
169H_DT23:DA34_I-0.392-0.214-0.217-0.22-10.943-9.29
172H_DT26:DA31_I0.247-0.3390.829-7.737-13.669-2.393
173H_DT27:DA30_I0.041-0.30.541-10.668-14.369-0.831
174H_DT28:DA29_I0.045-0.0860.336-11.623-16.731-8.243

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.