A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA3353  PDB ID: 4UX5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA2:DT13_D-0.787-0.1520.27-0.092-16.53611.149
13C_DA3:DT12_D0.035-0.1420.015-9.212-14.4519.775
16C_DA6:DT9_D-0.027-0.096-0.004-2.989-19.0041.509
112C_DA12:DT3_D-0.309-0.089-0.068-0.568-12.4829.78
113C_DA13:DT2_D0.166-0.2670.316.671-14.5924.481
11C_DC1:DG14_D0.021-0.1160.534-6.218-17.1185.054
17C_DC7:DG8_D0.088-0.1380.133-9.088-14.2057.291
19C_DC9:DG6_D-0.084-0.1290.306-5.647-11.147-4.007
15C_DG5:DC10_D-0.266-0.151-0.196-6.536-14.567-0.651
18C_DG8:DC7_D0.508-0.0930.0820.185-4.672-1.763
110C_DG10:DC5_D-0.091-0.1980.37710.099-11.680.25
114C_DG14:DC1_D-0.471-0.3960.2514.876-22.9251.642
14C_DT4:DA11_D0.512-0.112-0.2323.761-13.1384.344
111C_DT11:DA4_D0.22-0.373-0.1947.631-12.619-0.292

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.