4UX5: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA3353 PDB ID: 4UX5

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	C_DA2:DT13_D	-0.787	-0.152	0.27	-0.092	-16.536	11.149
1	3	C_DA3:DT12_D	0.035	-0.142	0.015	-9.212	-14.451	9.775
1	6	C_DA6:DT9_D	-0.027	-0.096	-0.004	-2.989	-19.004	1.509
1	12	C_DA12:DT3_D	-0.309	-0.089	-0.068	-0.568	-12.482	9.78
1	13	C_DA13:DT2_D	0.166	-0.267	0.3	16.671	-14.592	4.481
1	1	C_DC1:DG14_D	0.021	-0.116	0.534	-6.218	-17.118	5.054
1	7	C_DC7:DG8_D	0.088	-0.138	0.133	-9.088	-14.205	7.291
1	9	C_DC9:DG6_D	-0.084	-0.129	0.306	-5.647	-11.147	-4.007
1	5	C_DG5:DC10_D	-0.266	-0.151	-0.196	-6.536	-14.567	-0.651
1	8	C_DG8:DC7_D	0.508	-0.093	0.082	0.185	-4.672	-1.763
1	10	C_DG10:DC5_D	-0.091	-0.198	0.377	10.099	-11.68	0.25
1	14	C_DG14:DC1_D	-0.471	-0.396	0.251	4.876	-22.925	1.642
1	4	C_DT4:DA11_D	0.512	-0.112	-0.232	3.761	-13.138	4.344
1	11	C_DT11:DA4_D	0.22	-0.373	-0.194	7.631	-12.619	-0.292

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.