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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA3353
PDB ID:
4UX5
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
C_DA2:DT13_D
-0.787
-0.152
0.27
-0.092
-16.536
11.149
1
3
C_DA3:DT12_D
0.035
-0.142
0.015
-9.212
-14.451
9.775
1
6
C_DA6:DT9_D
-0.027
-0.096
-0.004
-2.989
-19.004
1.509
1
12
C_DA12:DT3_D
-0.309
-0.089
-0.068
-0.568
-12.482
9.78
1
13
C_DA13:DT2_D
0.166
-0.267
0.3
16.671
-14.592
4.481
1
1
C_DC1:DG14_D
0.021
-0.116
0.534
-6.218
-17.118
5.054
1
7
C_DC7:DG8_D
0.088
-0.138
0.133
-9.088
-14.205
7.291
1
9
C_DC9:DG6_D
-0.084
-0.129
0.306
-5.647
-11.147
-4.007
1
5
C_DG5:DC10_D
-0.266
-0.151
-0.196
-6.536
-14.567
-0.651
1
8
C_DG8:DC7_D
0.508
-0.093
0.082
0.185
-4.672
-1.763
1
10
C_DG10:DC5_D
-0.091
-0.198
0.377
10.099
-11.68
0.25
1
14
C_DG14:DC1_D
-0.471
-0.396
0.251
4.876
-22.925
1.642
1
4
C_DT4:DA11_D
0.512
-0.112
-0.232
3.761
-13.138
4.344
1
11
C_DT11:DA4_D
0.22
-0.373
-0.194
7.631
-12.619
-0.292
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.