A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA3353  PDB ID: 4UX5 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12CC_DA2DA3:DT12DT13_DD-0.325-0.0223.502-1.0770.64641.919-0.1030.3343.5090.9031.50541.937
13CC_DA3DT4:DA11DT12_DD-0.443-0.4052.9932.8035.40928.098-1.9061.4572.81110.978-5.68928.738
16CC_DA6DC7:DG8DT9_DD0.8250.0793.413-0.3488.03734.075-1.135-1.4273.33613.4830.58334.984
112CC_DA12DA13:DT2DT3_DD-0.226-0.1252.907-4.4810.46435.84-0.26-0.22.9120.7517.24636.112
113CC_DA13DG14:DC1DT2_DD-0.626-0.8813.373-4.0288.62734.877-2.6540.4343.12514.0716.56936.114
11CC_DC1DA2:DT13DG14_DD0.084-0.5442.9870.93313.22428.253-3.2360.02.49225.397-1.79131.151
17CC_DC7DG8:DC7DG8_DD-0.1221.2083.431-1.41722.18826.181-2.135-0.0593.41640.862.60934.221
19CC_DC9DG10:DC5DG6_DD0.3120.8363.2630.21814.528.974-1.223-0.523.30126.955-0.40532.331
15CC_DG5DA6:DT9DC10_DD-0.38-0.1023.212-5.1024.92536.502-0.809-0.0763.1947.7738.05137.161
18CC_DG8DC9:DG6DC7_DD-0.5850.4683.554-3.15-9.65335.4392.1540.4653.355-15.475.04836.821
110CC_DG10DT11:DA4DC5_DD0.346-0.9733.3394.9018.6931.013-3.2420.232.98415.75-8.88132.541
14CC_DT4DG5:DC10DA11_DD-0.820.7483.583-5.31911.10634.756-0.5540.4653.72317.9118.57836.809
111CC_DT11DA12:DT3DA4_DD0.428-0.6513.6420.3518.31831.386-2.758-0.6993.36815.046-0.63532.445

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.