A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
Search for released structures

NDB ID: 4V88  PDB ID: 4V88 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
141A2_A39:C469_A200
142A2_A40:G467_A2911
143A2_A41:U466_A2120
155A2_A46:G432_A2120
160A2_A51:U440_A2221
169A2_A67:G83_A2100
172A2_A93:G396_A21011
191A2_A103:U358_A2424
199A2_A108:U306_A2120
1103A2_A112:U302_A2120
1112A2_A124:U293_A2120
1114A2_A126:G291_A2911
1118A2_A162:U152_A2120
1120A2_A164:U150_A2120
1124A2_A168:U146_A2424
1125A2_A169:A145_A245
1126A2_A171:U144_A200
1128A2_A173:G142_A218
1132A2_A182:U203_A2120
1138A2_A188:A197_A2100
1144A2_A206:U259_A2120
1148A2_A210:U255_A2120
1151A2_A213:U252_A2120
1342A2_A218:U830_A200
1154A2_A220:U841_A2120
1155A2_A221:U840_A2120
1156A2_A222:U839_A2120
1159A2_A225:U836_A2120
1160A2_A226:U835_A2120
1165A2_A265:U289_A2120
196A2_A312:A353_A245
197A2_A315:A352_A200
1175A2_A316:U348_A2120
1178A2_A323:U345_A2120
1183A2_A328:U340_A2120
1187A2_A366:U375_A2120
1188A2_A367:U374_A2120
173A2_A399:U395_A2424
174A2_A401:C394_A2425
178A2_A407:G390_A230
181A2_A410:G423_A218
144A2_A438:G465_A250
146A2_A441:U463_A2120
166A2_A452:U88_A2120
11A2_A468:U32_A2424
1195A2_A477:A511_A200
1196A2_A478:G510_A200
1200A2_A483:U504_A200
1201A2_A485:U502_A2120
1199A2_A505:U507_A200
1207A2_A515:G537_A21011
1209A2_A518:U533_A2120
1210A2_A520:U532_A2120
1211A2_A521:C531_A200
1218A2_A550:U588_A2120
1225A2_A567:G576_A21011
16A2_A599:U27_A2120
18A2_A601:U24_A2120
111A2_A604:U21_A2120
1234A2_A615:U1106_A2120
1236A2_A622:U1104_A2120
1307A2_A706:A734_A211
1308A2_A707:G730_A200
1311A2_A713:U725_A200
1318A2_A746:U805_A200
1324A2_A752:G797_A218
1326A2_A760:U790_A2120
1331A2_A774:C786_A2226
1335A2_A814:U857_A2221
1337A2_A817:U854_A200
1257A2_A865:U965_A2120
1261A2_A869:U958_A200
1272A2_A881:U947_A2120
1275A2_A884:U928_A2120
1278A2_A887:G925_A218
1282A2_A891:U921_A2120
1283A2_A892:U920_A2120
1346A2_A898:G914_A21011
1348A2_A900:U909_A2120
1349A2_A933:A944_A221
1243A2_A966:U633_A2120
1244A2_A967:U632_A2120
1247A2_A970:U629_A2424
1248A2_A971:G628_A21011
1250A2_A973:U626_A2120
1251A2_A974:C625_A210
1354A2_A979:C1022_A200
1358A2_A983:U1018_A2120
1364A2_A992:U1012_A2221
1365A2_A993:G1011_A21011
1367A2_A995:U1009_A2120
1372A2_A1036:U1095_A2120
1375A2_A1061:U1058_A2120
1377A2_A1065:U1054_A200
1381A2_A1069:U1049_A2120
1388A2_A1076:G1042_A218
1394A2_A1084:U1089_A2120
1399A2_A1113:A1132_A282
1401A2_A1116:G1130_A21011
116A2_A1138:G16_A21011
117A2_A1139:U8_A2323
120A2_A1142:U12_A2120
121A2_A1143:A11_A210
125A2_A1147:U1630_A2120
128A2_A1151:U1627_A2120
129A2_A1152:U1626_A2120
134A2_A1157:U1621_A2120
135A2_A1160:U1617_A2120
1432A2_A1203:G1553_A2610
1448A2_A1211:U1452_A2120
1454A2_A1219:G1264_A21011
1456A2_A1221:U1262_A2120
1458A2_A1223:U1260_A2120
1459A2_A1224:U1259_A2120
1462A2_A1230:U1257_A2120
1465A2_A1234:U1251_A2120
1467A2_A1236:U1249_A2120
1469A2_A1238:U1247_A2120
1476A2_A1275:U1437_A200
1493A2_A1296:U1301_A2120
1503A2_A1336:U1415_A2120
1509A2_A1344:U1381_A210
1510A2_A1345:U1380_A2120
1511A2_A1348:U1377_A2120
1520A2_A1357:U1366_A2120
1523A2_A1388:G1409_A2610
1525A2_A1391:U1407_A2120
1504A2_A1410:G1387_A2610
1427A2_A1469:G1170_A218
1531A2_A1471:U1538_A2424
1534A2_A1475:U1532_A2120
1538A2_A1479:U1528_A200
1542A2_A1487:U1519_A2120
1433A2_A1556:U1552_A2424
1443A2_A1569:G1542_A21011
1444A2_A1570:G1541_A21011
1408A2_A1576:G1169_A21011
1409A2_A1577:U1168_A2120
1555A2_A1586:G1610_A2911
1556A2_A1587:U1609_A2120
1561A2_A1592:U1604_A2120
1562A2_A1593:U1603_A2120
1615A2_A1689:A1712_A260
1565A2_A1719:U1682_A2120
1567A2_A1721:G1680_A2911
1568A2_A1722:G1679_A2911
1574A2_A1728:G1673_A218
1576A2_A1730:A1671_A260
1577A2_A1731:G1670_A21011
1578A2_A1732:U1669_A2120
1586A2_A1740:U1661_A2120
1590A2_A1744:U1656_A2120
1592A2_A1746:G1654_A2100
1595A2_A1749:A1651_A210
1596A2_A1750:U1650_A2120
1599A2_A1753:U1647_A2120
1600A2_A1754:C1646_A200
1601A2_A1756:G1645_A218
1606A2_A1762:C1640_A250
1607A2_A1763:C1639_A210
1623A2_A1776:U1785_A2120
112A2_C4:G20_A2119
138A2_C36:U472_A2118
140A2_C38:A470_A200
157A2_C49:G430_A2119
158A2_C50:G429_A2119
162A2_C54:G426_A2119
171A2_C70:G81_A2119
184A2_C97:G386_A2119
186A2_C99:G384_A2119
198A2_C107:G307_A2119
1115A2_C114:U245_A200
1116A2_C160:G154_A2119
1122A2_C166:A148_A2425
1127A2_C172:G143_A2119
1134A2_C184:G201_A2119
1136A2_C186:G199_A2119
1139A2_C189:G196_A2119
1140A2_C190:G195_A2119
1141A2_C191:U193_A200
1158A2_C224:G837_A2119
1164A2_C230:G235_A210
1167A2_C268:G287_A2119
1169A2_C270:G285_A2119
1173A2_C275:G281_A210
1174A2_C276:G279_A2119
192A2_C309:G357_A2119
193A2_C310:G356_A2119
195A2_C314:C354_A200
1176A2_C317:G347_A2119
187A2_C361:G383_A2119
176A2_C405:G392_A2119
179A2_C408:G389_A2119
180A2_C409:G388_A2119
182A2_C411:G422_A2119
1192A2_C414:G419_A2119
1193A2_C415:G418_A260
147A2_C442:G462_A2119
148A2_C443:G461_A2119
150A2_C448:G458_A2119
151A2_C449:G457_A2119
1197A2_C479:G509_A2119
1204A2_C489:G497_A200
1205A2_C491:G496_A210
1230A2_C554:A555_A200
1220A2_C559:G586_A2119
1227A2_C569:G574_A2119
13A2_C596:G30_A2119
1233A2_C614:G1107_A2119
1290A2_C644:G690_A210
1291A2_C645:G689_A2119
1292A2_C646:G688_A2119
1298A2_C654:U679_A200
1300A2_C658:G676_A2119
1303A2_C700:G738_A2119
1309A2_C709:U710_A200
1313A2_C716:G722_A200
1314A2_C717:G720_A2222
1319A2_C747:G802_A2119
1334A2_C777:G783_A2119
1262A2_C870:G957_A210
1266A2_C874:G953_A2119
1271A2_C880:G948_A2119
1274A2_C883:U945_A2118
1281A2_C890:G922_A2119
1352A2_C937:G942_A2119
1246A2_C969:A630_A260
1252A2_C975:G624_A2119
1362A2_C990:G1014_A2119
1371A2_C1028:G1792_A2119
1238A2_C1033:G1102_A2119
1239A2_C1034:G1101_A2119
1373A2_C1037:G1094_A2119
1378A2_C1066:G1053_A2119
1379A2_C1067:G1051_A2119
1380A2_C1068:G1050_A200
1382A2_C1070:G1048_A2119
1384A2_C1072:G1046_A2119
1387A2_C1075:A1043_A200
1389A2_C1077:G1041_A210
1390A2_C1078:G1040_A2119
1406A2_C1121:G1126_A2119
126A2_C1148:G1629_A2119
133A2_C1156:G1622_A2119
1414A2_C1158:A1163_A2226
136A2_C1161:G1616_A2119
1446A2_C1209:G1454_A2119
1447A2_C1210:G1453_A2119
1452A2_C1215:G1448_A2119
1453A2_C1216:A1446_A2425
1455A2_C1220:G1263_A2119
1457A2_C1222:G1261_A2119
1480A2_C1279:G1429_A2119
1481A2_C1280:G1428_A210
1485A2_C1284:U1423_A200
1495A2_C1306:G1318_A2119
1497A2_C1309:G1316_A2119
1499A2_C1332:G1419_A2119
1500A2_C1333:G1418_A2119
1505A2_C1338:G1386_A2119
1506A2_C1339:G1385_A2119
1507A2_C1342:G1383_A2119
1518A2_C1355:G1368_A2119
1522A2_C1359:G1364_A2119
1524A2_C1389:G1412_A2119
1527A2_C1393:G1405_A2119
1418A2_C1459:G1179_A2119
1419A2_C1461:G1178_A2119
1421A2_C1463:G1176_A2119
1423A2_C1465:C1174_A200
1425A2_C1467:G1172_A2119
1428A2_C1470:G1574_A2119
1532A2_C1472:G1536_A200
1535A2_C1476:G1531_A2119
1540A2_C1482:A1525_A2425
1544A2_C1494:G1513_A2119
1545A2_C1495:G1512_A2119
1550A2_C1500:G1507_A2119
1551A2_C1501:G1506_A2119
1553A2_C1537:G1572_A210
1437A2_C1563:G1548_A2119
1439A2_C1565:G1546_A2119
1442A2_C1568:A1543_A200
1445A2_C1571:G1540_A2119
1412A2_C1580:G1165_A2119
1413A2_C1581:G1164_A2119
1558A2_C1589:G1607_A2119
1560A2_C1591:G1605_A2119
1612A2_C1686:G1715_A2119
1575A2_C1729:G1672_A2119
1579A2_C1733:G1668_A2119
1585A2_C1739:G1662_A2119
1597A2_C1751:G1649_A2119
1604A2_C1759:G1642_A2119
1608A2_C1764:G1638_A2119
1619A2_C1772:G1789_A2119
1620A2_C1773:G1788_A2119
114A2_G6:C18_A2119
115A2_G7:C17_A2119
154A2_G42:C433_A2119
156A2_G48:C431_A2119
161A2_G53:C427_A2119
164A2_G57:C90_A2119
167A2_G63:C87_A2119
170A2_G69:U82_A2128
183A2_G96:A387_A218
1100A2_G109:C305_A2119
1111A2_G123:C294_A2119
1119A2_G163:G151_A236
1121A2_G165:C149_A2119
1130A2_G175:C139_A200
1137A2_G187:A198_A200
1142A2_G204:C263_A2119
1152A2_G214:A251_A21011
1162A2_G228:C237_A2119
1153A2_G243:C250_A2119
1168A2_G269:C286_A2119
1171A2_G273:U283_A2128
1172A2_G274:C282_A2119
1180A2_G325:C343_A2119
1181A2_G326:C342_A2119
1184A2_G329:C339_A2119
1185A2_G330:C338_A2119
188A2_G362:C382_A2119
189A2_G363:C381_A2119
190A2_G364:A756_A2610
1186A2_G365:C376_A2119
1190A2_G371:G613_A236
175A2_G404:C393_A2119
1198A2_G480:U508_A2128
1202A2_G486:U501_A2128
1203A2_G488:G498_A240
1206A2_G514:C543_A200
1208A2_G516:C536_A2119
1213A2_G523:A529_A2100
1216A2_G548:C590_A2119
1217A2_G549:C589_A2119
1228A2_G551:C573_A2119
1229A2_G552:C572_A2119
1219A2_G557:C587_A2119
1222A2_G561:C584_A2119
1223A2_G562:C583_A2119
1226A2_G568:C575_A2119
12A2_G595:C31_A2119
14A2_G597:U29_A2128
1231A2_G607:U1099_A2128
1232A2_G610:G1108_A247
1235A2_G616:C1105_A2119
1287A2_G641:U693_A2128
1288A2_G642:C692_A2119
1289A2_G643:C691_A2119
1293A2_G648:C686_A210
1296A2_G651:C683_A2119
1297A2_G652:C682_A210
1305A2_G702:C736_A210
1306A2_G703:C735_A2119
1310A2_G712:C726_A250
1323A2_G751:C798_A2119
1327A2_G761:A789_A21011
1328A2_G763:C773_A2119
1332A2_G775:U785_A2128
1333A2_G776:C784_A2119
1336A2_G816:A855_A200
1338A2_G819:G853_A200
1341A2_G824:C848_A210
1344A2_G845:C827_A2119
1345A2_G846:U826_A200
1258A2_G866:C962_A2119
1259A2_G867:U961_A2128
1260A2_G868:U960_A210
1263A2_G871:C956_A2119
1264A2_G872:A955_A218
1267A2_G875:A952_A218
1268A2_G877:A951_A218
1269A2_G878:C950_A2119
1270A2_G879:C949_A2119
1276A2_G885:C927_A2119
1286A2_G895:U917_A210
1347A2_G899:C910_A2119
1351A2_G936:C943_A2119
1353A2_G938:A941_A200
1249A2_G972:C627_A2119
1253A2_G976:A1027_A200
1355A2_G980:C1021_A2119
1359A2_G984:U1017_A2128
1360A2_G985:C1016_A2119
1363A2_G991:A1013_A21011
1366A2_G994:C1010_A2119
1369A2_G997:C1007_A2119
1237A2_G1032:U1103_A2128
1385A2_G1073:C1045_A2119
1386A2_G1074:U1044_A2128
1393A2_G1083:C1090_A2119
1395A2_G1109:U1136_A2128
1396A2_G1110:U1135_A2128
1397A2_G1111:C1134_A2119
1398A2_G1112:A1133_A21011
1403A2_G1118:U1129_A2128
1404A2_G1119:C1128_A2119
1407A2_G1122:A1125_A200
118A2_G1140:C14_A2119
119A2_G1141:C13_A2119
124A2_G1146:C1632_A2119
127A2_G1149:U1628_A2128
130A2_G1153:C1625_A2119
131A2_G1154:C1624_A210
132A2_G1155:C1623_A2119
1431A2_G1188:C1197_A2119
1449A2_G1212:C1451_A2119
1450A2_G1213:U1450_A2128
1460A2_G1229:A1256_A2911
1464A2_G1233:C1252_A2119
1468A2_G1237:C1248_A2119
1466A2_G1245:U1250_A2227
1471A2_G1267:U1442_A2128
1472A2_G1268:C1441_A2119
1473A2_G1270:C1440_A2119
1474A2_G1271:C1439_A2119
1478A2_G1277:G1273_A236
1479A2_G1278:U1430_A2128
1482A2_G1281:C1426_A2119
1486A2_G1288:C1327_A2119
1489A2_G1292:C1323_A2119
1491A2_G1294:U1303_A2128
1492A2_G1295:U1302_A2128
1494A2_G1297:A1300_A200
1496A2_G1308:C1317_A2119
1512A2_G1349:C1376_A2119
1514A2_G1351:C1374_A210
1515A2_G1352:C1373_A2119
1517A2_G1354:U1369_A2128
1521A2_G1358:C1365_A2119
1528A2_G1394:C1404_A2119
1529A2_G1395:C1403_A2119
1417A2_G1458:C1180_A2119
1420A2_G1462:C1177_A2119
1422A2_G1464:U1175_A2128
1424A2_G1466:C1173_A2119
1533A2_G1474:C1533_A2119
1536A2_G1477:C1530_A2119
1537A2_G1478:C1529_A2119
1539A2_G1480:C1527_A2119
1541A2_G1486:U1520_A200
1543A2_G1488:C1518_A2119
1548A2_G1498:C1509_A2119
1549A2_G1499:U1508_A2128
1552A2_G1502:A1505_A200
1436A2_G1562:C1549_A2119
1557A2_G1588:U1608_A2128
1559A2_G1590:C1606_A2119
1563A2_G1594:C1602_A2119
1611A2_G1685:C1716_A2119
1616A2_G1690:C1711_A2119
1564A2_G1718:C1683_A2119
1566A2_G1720:A1681_A260
1572A2_G1726:C1675_A2119
1573A2_G1727:C1674_A2119
1582A2_G1736:U1665_A2128
1583A2_G1737:C1664_A2119
1591A2_G1745:A1655_A21011
1593A2_G1747:C1653_A2119
1594A2_G1748:C1652_A2119
1602A2_G1757:C1644_A2119
1605A2_G1760:C1641_A2119
1609A2_G1767:C1636_A2119
1610A2_G1768:A1765_A230
1621A2_G1774:C1787_A2119
1624A2_G1777:C1784_A2119
1625A2_G1778:C1783_A2119
113A2_U5:A19_A2120
137A2_U35:A473_A2120
139A2_U37:A471_A2120
153A2_U45:G434_A250
159A2_U52:A428_A2120
163A2_U56:G91_A200
165A2_U58:G89_A2128
168A2_U64:A86_A2120
185A2_U98:A385_A2120
1101A2_U110:U304_A2116
1102A2_U111:U303_A2116
1104A2_U113:A301_A2120
1105A2_U116:A300_A2120
1106A2_U117:A299_A2120
1107A2_U118:C298_A200
1108A2_U120:U297_A2116
1109A2_U121:U296_A2116
1110A2_U122:A295_A2120
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13833A8_C50:G75_A8119
12584A8_C62:U55_A8118
13845A8_C115:G107_A8119
13847A8_C117:G136_A8119
13848A8_C118:G135_A8119
13849A8_C119:G134_A8119
13850A8_C120:G133_A8119
12575A8_G39:A104_A8911
12578A8_G42:U102_A8128
12582A8_G46:C57_A8119
13832A8_G49:C76_A8119
13834A8_G63:A97_A818
13839A8_G68:C91_A8119
13841A8_G70:A88_A81011
13844A8_G114:C108_A8119
13846A8_G116:C137_A8119
13853A8_G123:C130_A8119
13854A8_G124:C129_A8119
13835A8_U64:A96_A8120
13838A8_U67:A92_A8120
13840A8_U69:A89_A8120
13851A8_U121:G132_A8128
13852A8_U122:A131_A8120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)