A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Nov-2019 number of released structures: 10455
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NDB ID: 4WJ3  PDB ID: 4WJ3 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17Q_A7:U66_Q-0.336-0.15-0.2971.49-0.3531.103
125Q_A14:U8_Q-3.412-1.517-1.0113.3684.613-97.037
114Q_A38:C32_Q-3.283-0.134-0.058-7.0130.39-6.772
117Q_A41:U29_Q-0.366-0.124-0.03-1.769-11.469-0.342
12Q_C2:G71_Q0.950.25-0.3847.042-15.66916.606
13Q_C3:G70_Q-0.4440.242-0.007-2.7150.06510.41
15Q_C5:G68_Q0.7120.9-0.5425.446-5.07419.661
122Q_C11:G24_Q1.356-0.421-0.93-6.592-13.093-1.976
124Q_C13:G22_Q3.170.1470.118-0.833-3.64510.518
116Q_C40:G30_Q-0.1430.2980.1065.659-8.0958.211
18Q_C49:G65_Q0.888-0.359-0.70911.354-12.9391.812
19Q_C50:G64_Q-0.578-0.0960.0610.743-5.183-0.421
14Q_G4:C69_Q0.208-0.054-0.578-4.1750.1422.192
16Q_G6:C67_Q0.860.898-0.463-13.234-8.97122.453
121Q_G10:C25_Q-1.448-0.272-0.367-9.601-7.39210.981
126Q_G15:C48_Q0.0043.7470.88712.49817.422153.356
127Q_G19:C56_Q-0.568-0.510.682-23.894-33.366-11.05
120Q_G44:A26_Q0.2282.0750.18-24.887-17.132-7.268
111Q_G52:C62_Q0.632-0.085-0.341-5.34-6.2870.988
112Q_G53:C61_Q0.2260.54-0.299-17.916-15.0358.081
11Q_U1:A72_Q-0.7020.324-0.07220.403-21.12512.907
123Q_U12:A23_Q0.092-0.037-0.14-10.584-6.3310.336
115Q_U39:A31_Q-0.244-0.028-0.1097.485-20.337-2.236
118Q_U42:A28_Q0.0580.0470.2816.187-19.3459.102
119Q_U43:A27_Q-0.571-0.0010.15-4.129-27.115-2.431
110Q_U51:A63_Q0.012-0.012-0.354.585-5.843-3.182
113Q_U54:A58_Q3.872-1.5360.4424.55815.34-97.896
134R_A7:U66_R-0.531-0.158-0.2183.4460.9880.467
152R_A14:U8_R-3.507-1.528-0.9332.2254.285-96.491
141R_A38:C32_R-3.689-0.4570.333-4.233-1.965-4.961
144R_A41:U29_R-0.212-0.101-0.127-1.527-12.1783.171
129R_C2:G71_R1.1230.267-0.6796.048-12.77814.814
130R_C3:G70_R-1.0920.494-0.148-2.6191.7811.11
132R_C5:G68_R0.8980.877-0.7264.234-6.23716.79
149R_C11:G24_R0.474-0.266-0.467-6.337-14.2063.812
151R_C13:G22_R3.1940.0790.156-0.32-5.89911.732
143R_C40:G30_R-0.3470.4050.3126.316-9.0713.366
135R_C49:G65_R0.932-0.402-0.51713.945-16.2110.416
136R_C50:G64_R-0.559-0.073-0.2012.671-5.790.87
131R_G4:C69_R0.1550.408-0.86-2.4980.1814.242
133R_G6:C67_R0.7030.848-0.223-12.711-10.70721.301
148R_G10:C25_R-1.534-0.375-0.42-9.991-10.1112.242
153R_G15:C48_R0.0793.5690.6737.50313.486152.89
154R_G19:C56_R-0.399-0.510.893-30.832-35.872-12.54
147R_G44:A26_R0.5312.0110.574-26.915-15.214-7.12
138R_G52:C62_R0.852-0.124-0.294-6.584-10.5871.651
139R_G53:C61_R0.5090.587-0.296-19.074-16.24811.804
128R_U1:A72_R-0.6590.188-0.23519.373-19.8698.822
150R_U12:A23_R0.16-0.037-0.153-11.015-6.0390.796
142R_U39:A31_R-0.373-0.024-0.1976.167-19.0570.989
145R_U42:A28_R0.356-0.0160.1746.301-19.28610.745
146R_U43:A27_R-0.666-0.0690.188-8.438-28.031-2.052
137R_U51:A63_R-0.009-0.044-0.2344.443-7.185-1.668
140R_U54:A58_R4.052-1.7780.2256.00715.222-96.552
161S_A7:U66_S-0.246-0.094-0.3711.3961.6571.586
179S_A14:U8_S-3.585-1.625-0.9942.4514.193-96.817
168S_A38:C32_S-3.341-0.0570.282-6.4852.475-5.982
171S_A41:U29_S-0.215-0.0780.073-3.573-10.7961.592
156S_C2:G71_S0.9340.435-0.2739.934-15.34417.748
157S_C3:G70_S-0.306-0.037-0.2783.174-0.0313.409
159S_C5:G68_S0.5920.823-0.5958.773-4.80118.72
176S_C11:G24_S0.948-0.337-0.779-2.353-17.5672.715
178S_C13:G22_S3.479-0.370.205-3.092-7.4061.769
170S_C40:G30_S-0.1890.3080.276.33-13.07610.646
162S_C49:G65_S0.957-0.355-0.54313.492-10.9450.639
163S_C50:G64_S-0.391-0.071-0.029-2.139-3.625-0.856
158S_G4:C69_S-0.187-0.079-0.432-2.715-1.1582.133
160S_G6:C67_S0.6030.858-0.496-12.571-4.46222.378
175S_G10:C25_S-1.74-0.273-0.64-10.427-6.82412.851
180S_G15:C48_S0.0733.5420.77111.00513.225151.927
181S_G19:C56_S-0.56-0.3840.637-23.728-33.118-8.897
174S_G44:A26_S0.2662.085-0.366-26.347-15.175-8.265
165S_G52:C62_S0.798-0.128-0.379-7.793-10.9731.878
166S_G53:C61_S0.1280.489-0.376-19.92-15.6826.218
155S_U1:A72_S-0.6910.507-0.07825.257-16.38812.362
177S_U12:A23_S-0.1090.00.212-11.667-6.1060.431
169S_U39:A31_S-0.398-0.0230.0476.66-19.607-2.133
172S_U42:A28_S0.355-0.1970.3784.804-16.8234.276
173S_U43:A27_S-0.462-0.0260.208-0.966-26.83-3.19
164S_U51:A63_S0.191-0.061-0.232.794-2.832-2.544
167S_U54:A58_S3.99-1.7120.3614.34617.05-96.26
188T_A7:U66_T-0.393-0.156-0.4560.7442.748-0.167
1106T_A14:U8_T-3.308-1.51-1.3310.726-1.217-96.039
195T_A38:C32_T-3.506-0.3040.164-4.1731.515-2.631
198T_A41:U29_T-0.049-0.106-0.152-3.457-8.941.335
183T_C2:G71_T1.040.385-0.5979.985-12.4816.694
184T_C3:G70_T-0.61-0.072-0.1913.024-2.7043.961
186T_C5:G68_T0.7110.672-0.715.455-3.17217.835
1103T_C11:G24_T0.83-0.315-0.847-2.74-19.6061.116
1105T_C13:G22_T3.212-0.4240.042-2.549-5.96.926
197T_C40:G30_T-0.1390.37-0.2656.251-9.25312.04
189T_C49:G65_T0.901-0.36-0.57612.662-11.6270.353
190T_C50:G64_T-0.697-0.0850.1030.452-4.088-0.115
185T_G4:C69_T0.037-0.096-0.54-2.349-2.6992.976
187T_G6:C67_T0.6640.859-0.323-12.543-6.023.207
1102T_G10:C25_T-1.468-0.341-0.485-11.738-7.62510.719
1107T_G15:C48_T0.1023.7020.57113.85710.602150.659
1108T_G19:C56_T-0.673-0.5870.917-25.162-32.849-9.198
1101T_G44:A26_T0.2631.9620.217-24.471-15.648-9.576
192T_G52:C62_T0.93-0.14-0.269-8.472-13.5172.005
193T_G53:C61_T0.3380.562-0.606-21.899-13.0966.839
182T_U1:A72_T-0.5890.291-0.34625.691-17.9145.49
1104T_U12:A23_T0.148-0.1090.192-10.832-5.9042.437
196T_U39:A31_T-0.362-0.053-0.0984.541-20.0591.193
199T_U42:A28_T0.253-0.167-0.0056.434-15.6844.997
1100T_U43:A27_T-0.615-0.0730.25-4.119-26.64-3.58
191T_U51:A63_T0.04-0.018-0.1024.823-4.211-1.745
194T_U54:A58_T3.849-1.5270.2685.14717.614-98.219

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.