A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Nov-2019 number of released structures: 10455
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NDB ID: 4WJ3  PDB ID: 4WJ3 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
17QQ_A7C49:G65U66_QQ0.694-2.0373.326.4080.60935.118-3.416-0.1793.3560.999-10.51135.684
124QQ_A14G15:C48U8_QQ1.462-3.7052.5210.542-7.013-71.9043.3131.2542.1915.9580.46-72.201
113QQ_A38U39:A31C32_QQ0.223-0.8633.162-0.0197.8439.953-2.061-0.3222.94811.3410.02740.684
116QQ_A41U42:A28U29_QQ0.601-1.0733.004-0.874.92834.023-2.503-1.1372.818.3661.47734.378
12QQ_C2C3:G70G71_QQ-0.582-1.9033.352-2.56712.55926.554-6.1860.6462.28225.5375.21929.436
13QQ_C3G4:C69G70_QQ-0.583-1.2593.2942.30913.27330.327-4.2781.3832.49123.942-4.16433.121
15QQ_C5G6:C67G68_QQ0.724-1.493.6512.63115.88228.499-5.45-0.8242.54429.477-4.88332.649
121QQ_C11U12:A23G24_QQ0.472-1.3823.254-0.23317.31629.167-4.855-0.8452.12131.1640.4233.824
123QQ_C13A14:U8G22_QQ-2.084-0.0823.891-3.932-2.9651.5350.1482.0664.028-3.3954.51151.753
115QQ_C40A41:U29G30_QQ-0.671-1.3913.121-1.16916.6830.958-4.4540.9622.13928.7692.01635.088
18QQ_C49C50:G64G65_QQ-0.793-2.3733.647-5.0447.59726.507-6.7730.3992.96315.97910.60928.005
19QQ_C50U51:A63G64_QQ-0.029-1.4623.1193.6647.38232.602-3.6240.5942.71312.894-6.40133.601
14QQ_G4C5:G68C69_QQ1.006-1.4753.0240.59611.44429.432-4.518-1.7582.32221.525-1.1231.538
16QQ_G6A7:U66C67_QQ-1.408-1.8272.713-0.51814.97923.403-6.2552.8521.34932.9481.1427.735
120QQ_G10C11:G24C25_QQ-1.181-1.0173.2694.5217.30544.379-1.9511.9252.9479.565-5.91945.161
119QQ_G44G10:C25A26_QQ-2.822-3.1593.41720.3959.25853.9-3.6673.8131.8099.755-21.48858.046
111QQ_G52G53:C61C62_QQ0.737-1.9543.6662.4512.87730.857-4.255-0.8583.525.381-4.58531.082
112QQ_G53U54:A58C61_QQ-1.991-2.463.3-5.271-8.35385.905-1.6011.3313.576-6.1123.85786.361
11QQ_U1C2:G71A72_QQ0.251-1.0723.7660.4255.93338.695-2.404-0.3173.5728.89-0.63639.132
122QQ_U12C13:G22A23_QQ0.755-1.1093.0211.3558.2840.317-2.381-0.9432.77211.858-1.9441.145
114QQ_U39C40:G30A31_QQ0.639-1.3243.438-3.9016.65832.813-3.371-1.7393.02511.5876.78933.684
117QQ_U42U43:A27A28_QQ-0.209-1.5083.3532.8237.27334.783-3.4990.7432.96211.98-4.65135.621
118QQ_U43G44:A26A27_QQ-0.281-1.6933.6684.6756.38637.191-3.4751.0723.2869.876-7.2337.994
110QQ_U51G52:C62A63_QQ0.382-1.3933.476-1.29915.76234.031-4.19-0.7622.58925.3062.08537.428
131RR_A7C49:G65U66_RR0.479-2.0023.2985.6280.78535.63-3.3470.0353.291.272-9.12636.066
148RR_A14G15:C48U8_RR1.489-3.5372.6972.473-4.788-71.1973.161.3432.444.1072.122-71.374
137RR_A38U39:A31C32_RR0.312-0.8283.4391.6186.20941.109-1.847-0.2623.2958.777-2.28841.585
140RR_A41U42:A28U29_RR0.526-1.1362.985-0.9625.11334.57-2.577-1.0042.7788.5451.60834.948
126RR_C2C3:G70G71_RR-0.43-2.1053.281-2.57113.79622.758-7.570.3711.77231.4155.85626.688
127RR_C3G4:C69G70_RR-0.58-1.1763.2382.8213.76931.399-3.9621.3862.46223.995-4.91434.329
129RR_C5G6:C67G68_RR0.842-1.5363.5381.34915.89327.771-5.587-1.2922.37130.167-2.56131.947
145RR_C11U12:A23G24_RR0.235-1.2013.3530.19516.85632.347-4.141-0.3512.45228.009-0.32536.372
147RR_C13A14:U8G22_RR-2.081-0.0723.933-5.215-3.66152.1970.2141.934.105-4.1435.90252.557
139RR_C40A41:U29G30_RR-0.77-1.3263.112-0.50816.55231.844-4.211.1912.19127.9330.85635.793
132RR_C49C50:G64G65_RR-0.711-2.3263.753-4.736.4426.607-6.5310.2463.18913.6099.99427.76
133RR_C50U51:A63G64_RR-0.074-1.4863.2472.0147.97832.147-3.8630.4482.79914.119-3.56433.156
128RR_G4C5:G68C69_RR0.841-1.3593.2670.49910.1730.439-4.177-1.4392.69818.724-0.91932.058
130RR_G6A7:U66C67_RR-1.412-1.8032.621-0.4615.09123.499-6.0842.861.27633.0411.00827.874
144RR_G10C11:G24C25_RR-0.932-1.0313.1781.8678.33141.067-2.2551.4862.88111.722-2.62741.908
143RR_G44G10:C25A26_RR-2.939-3.2713.25722.2388.19653.46-3.7023.9351.5488.648-23.46658.123
135RR_G52G53:C61C62_RR0.979-1.8783.6693.4161.47531.595-3.73-1.0843.6622.698-6.24631.807
136RR_G53U54:A58C61_RR-2.161-2.4743.08-3.838-6.06185.285-1.6871.5063.293-4.4662.82985.528
125RR_U1C2:G71A72_RR0.428-1.1233.9111.4794.84239.092-2.34-0.4293.7647.2-2.19939.406
146RR_U12C13:G22A23_RR0.841-1.0482.9641.4147.96340.607-2.236-1.0572.74511.338-2.01341.371
138RR_U39C40:G30A31_RR0.712-1.3723.193-4.9779.46531.522-3.827-1.9952.54816.8278.84833.243
141RR_U42U43:A27A28_RR-0.329-1.633.4022.9469.32233.722-4.0640.9762.82815.665-4.95135.071
142RR_U43G44:A26A27_RR-0.277-1.5563.553.6546.32839.087-3.0580.8523.2329.358-5.40439.738
134RR_U51G52:C62A63_RR0.331-1.3453.621-0.56713.77534.704-3.995-0.5962.89422.0470.90737.264
155SS_A7C49:G65U66_SS0.669-2.1423.2385.202-1.77734.792-3.271-0.3163.401-2.948-8.63235.21
172SS_A14G15:C48U8_SS1.426-3.6052.7180.326-4.571-71.5313.2021.2272.5093.9060.278-71.658
161SS_A38U39:A31C32_SS0.18-0.9593.2811.6224.36539.607-1.905-0.0783.1676.414-2.38439.869
164SS_A41U42:A28U29_SS0.342-1.1653.042-0.5012.88835.193-2.311-0.6312.9354.7660.82735.311
150SS_C2C3:G70G71_SS-0.888-1.9213.315-0.53310.52227.415-5.8591.6482.44221.2331.07629.334
151SS_C3G4:C69G70_SS-0.206-1.4633.3740.62613.97629.002-4.9850.4762.42626.079-1.16832.135
153SS_C5G6:C67G68_SS0.748-1.6123.4491.41720.00328.469-5.511-1.0551.96435.628-2.52334.702
169SS_C11U12:A23G24_SS0.05-1.2063.369-3.74717.56331.023-4.354-0.5922.35329.9046.37935.735
171SS_C13A14:U8G22_SS-1.99-0.0063.889-5.094-3.90946.1740.3931.9954.062-4.9566.45946.594
163SS_C40A41:U29G30_SS-0.699-1.3473.132-2.24917.57332.334-4.2190.8432.18129.03.71136.756
156SS_C49C50:G64G65_SS-0.73-2.4133.685-3.1818.67527.51-6.7910.7362.87117.6246.46228.992
157SS_C50U51:A63G64_SS-0.023-1.563.0982.946.8932.164-3.7960.4882.70312.229-5.21833.003
152SS_G4C5:G68C69_SS0.974-1.493.0020.7098.3830.869-4.015-1.6582.54215.388-1.30331.967
154SS_G6A7:U66C67_SS-1.394-1.8582.7650.56814.7624.431-6.0972.9221.40231.468-1.21228.491
168SS_G10C11:G24C25_SS-0.927-0.813.0812.7957.38743.223-1.7231.4832.859.929-3.75743.905
167SS_G44G10:C25A26_SS-2.681-3.1333.33217.96611.59351.809-3.8883.7011.70312.671-19.63755.765
159SS_G52G53:C61C62_SS0.611-1.9393.7831.7691.86729.705-4.213-0.7663.6863.633-3.44229.814
160SS_G53U54:A58C61_SS-1.85-2.4243.173-5.754-7.91386.595-1.5851.2163.435-5.7534.18487.037
149SS_U1C2:G71A72_SS0.321-1.1953.771.6396.80937.7-2.779-0.2583.5210.427-2.5138.322
170SS_U12C13:G22A23_SS0.411-0.9923.0794.2517.61443.961-1.942-0.1822.90210.053-5.61344.776
162SS_U39C40:G30A31_SS0.837-1.2423.28-2.2657.81233.117-3.304-1.7722.8613.4543.934.074
165SS_U42U43:A27A28_SS-0.081-1.593.1585.1135.9732.456-3.6830.9242.78510.49-8.98533.37
166SS_U43G44:A26A27_SS-0.31-1.7863.8626.1758.34737.191-3.8571.3233.30912.785-9.45838.563
158SS_U51G52:C62A63_SS0.381-1.33.5071.26617.20934.335-4.115-0.4242.60127.132-1.99638.31
179TT_A7C49:G65U66_TT0.643-2.1283.3125.187-2.28135.384-3.117-0.2653.494-3.723-8.46635.821
196TT_A14G15:C48U8_TT1.317-3.6492.818-0.209-4.079-70.8723.2611.1292.6353.515-0.18-70.974
185TT_A38U39:A31C32_TT0.052-0.9253.4791.2155.24840.747-1.9140.0643.347.497-1.73641.087
188TT_A41U42:A28U29_TT0.404-1.2712.9640.1134.48233.804-2.796-0.6732.7797.666-0.19334.091
174TT_C2C3:G70G71_TT-0.833-1.9383.294-1.51111.73526.059-6.3041.3812.27124.4823.15328.577
175TT_C3G4:C69G70_TT-0.2-1.283.3480.9614.30531.956-4.1750.4712.55424.501-1.64334.948
177TT_C5G6:C67G68_TT0.872-1.5213.4751.54117.65128.498-5.399-1.2742.22532.22-2.81433.46
193TT_C11U12:A23G24_TT0.29-1.173.327-4.20916.82532.053-4.068-1.0132.38628.0537.01736.336
195TT_C13A14:U8G22_TT-1.811-0.3954.1-5.712-0.72252.416-0.3841.5644.266-0.8156.44552.709
187TT_C40A41:U29G30_TT-0.762-1.393.241-2.3717.00231.757-4.430.932.27928.6073.98835.995
180TT_C49C50:G64G65_TT-0.631-2.4473.629-4.5967.34225.843-7.0820.162.90415.8599.92927.232
181TT_C50U51:A63G64_TT-0.102-1.5063.0971.9656.93333.1-3.5920.4612.72511.993-3.39933.854
176TT_G4C5:G68C69_TT0.833-1.4753.1660.4699.69630.87-4.202-1.4212.60717.675-0.85632.324
178TT_G6A7:U66C67_TT-1.468-1.9092.7951.42416.28523.457-6.3493.1961.1635.11-3.0728.526
192TT_G10C11:G24C25_TT-0.922-0.8923.0614.0487.23641.715-1.8911.6422.77810.042-5.61742.495
191TT_G44G10:C25A26_TT-2.942-3.1183.51718.6229.73854.421-3.6633.8921.9610.231-19.56458.048
183TT_G52G53:C61C62_TT0.641-1.9973.7532.5682.90730.042-4.484-0.6423.5895.578-4.92830.286
184TT_G53U54:A58C61_TT-2.021-2.3693.091-5.982-7.02284.997-1.5891.3553.352-5.1844.41685.401
173TT_U1C2:G71A72_TT0.671-1.2273.841.4417.47338.3-2.868-0.8063.5711.255-2.1739.021
194TT_U12C13:G22A23_TT0.514-1.0013.153.9997.46141.74-2.092-0.3272.97110.343-5.54342.552
186TT_U39C40:G30A31_TT0.692-1.23.302-1.3635.73432.544-3.054-1.4413.02210.1282.40833.059
189TT_U42U43:A27A28_TT-0.163-1.5573.4093.5577.03433.236-3.7580.8382.99312.087-6.11234.132
190TT_U43G44:A26A27_TT-0.286-1.4953.5654.91610.84339.207-3.3610.9643.0115.724-7.12840.906
182TT_U51G52:C62A63_TT0.339-1.2733.6891.44615.68135.211-3.988-0.3252.89724.468-2.25738.47

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.