A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Nov-2020 number of released structures: 11059
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NDB ID: 4WQS  PDB ID: 4WQS 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13GG_DA4DC5:DG14DT15_II-1.569-0.194.042-0.462-11.82926.0112.9983.0523.794-24.7150.96528.536
16GG_DA7DC8:DG11DT12_II1.011-0.1283.006-0.4481.49733.637-0.445-1.8122.9852.5850.77333.673
19GG_DA10DC11:DG8DT9_II-0.244-0.1733.624-0.2981.67328.887-0.7550.4163.6113.350.59628.936
111GG_DA12DA13:DT6DT7_II0.881-0.5573.331-0.051-7.86434.8510.271-1.4443.372-12.9260.08435.701
112GG_DA13DG14:DC5DT6_II-0.509-0.8383.254-0.1778.60237.864-2.2790.7463.00213.050.26838.794
116GG_DA17DC18:DG1DT2_II1.092-1.2414.0581.873-20.32423.0763.273-1.5433.941-41.81-3.85430.715
120GG_DA22DG23:C11U12_HH0.436-0.4783.812-2.1154.21622.385-2.925-1.9623.60510.7075.37122.871
12GG_DC3DA4:DT15DG16_II1.104-0.2544.058-0.768.08632.674-2.061-2.0593.86114.1031.32533.642
14GG_DC5DT6:DA13DG14_II1.202-1.9334.04-0.137-24.89420.2733.397-2.2184.062-51.4320.28332.004
17GG_DC8DC9:DG10DG11_II-0.780.153.030.423-6.12244.360.7111.062.978-8.062-0.55744.761
18GG_DC9DA10:DT9DG10_II0.99-0.1383.9031.141-8.43637.5361.052-1.3333.871-12.907-1.74538.455
110GG_DC11DA12:DT7DG8_II-0.723-0.1813.3472.819-8.08936.1420.821.5213.248-12.817-4.46737.111
114GG_DC15DT16:DA3DG4_II-1.659-1.2483.7220.849-11.87926.7390.6553.5113.862-24.218-1.7329.228
118GG_DC20DG21:C13G14_HH0.193-0.6063.598-3.52316.90124.611-4.819-1.1342.60634.7167.23629.986
122GG_DC24DG25:C9G10_HH-1.2270.1043.044-0.7019.66325.101-2.122.472.91421.251.54326.878
124GG_DC26DC27:G7G8_HH-1.508-0.9943.631-1.7154.3731.369-2.7062.4123.5398.0263.1531.709
125GG_DC27DG28:C6G7_HH-2.1810.0693.3481.2541.84832.912-2.8252.5392.13653.455-1.59752.793
113GG_DG14DC15:DG4DC5_II-0.449-0.5393.231.06311.02539.289-1.950.7582.96716.014-1.54440.761
117GG_DG19DC20:G14C15_HH-0.669-1.0813.767-3.52927.16319.124-6.4810.571.38155.2557.17933.302
119GG_DG21DA22:U12C13_HH0.652-1.2664.23-1.4123.44927.271-3.73-1.8084.0047.2722.97727.52
121GG_DG23DC24:G10C11_HH-0.799-0.7873.381-3.97724.04744.078-2.6670.6572.69929.5214.88250.073
123GG_DG25DC26:G8C9_HH0.806-0.3163.441.3616.12334.747-1.473-1.1183.36510.151-2.25735.292
11GG_DT2DC3:DG16DA17_II1.1990.3213.6664.874-17.3549.5821.643-0.9943.476-19.944-5.60352.561
15GG_DT6DA7:DT12DA13_II0.566-0.2233.349-0.9270.68147.129-0.336-0.7853.3340.8511.15947.142
115GG_DT16DA17:DT2DA3_II-1.405-1.3353.695-8.60439.96336.246-4.0220.9941.7949.02710.55654.114
128XX_DA4DC5:DG14DT15_ZZ2.378-1.5563.465-0.4113.88924.183-6.337-5.0352.21830.1740.8927.839
131XX_DA7DC8:DG11DT12_ZZ2.08-0.1933.5754.82-0.54636.829-0.22-2.5373.81-0.859-7.58837.136
134XX_DA10DC11:DG8DT9_ZZ1.261-0.8474.0310.0425.95129.707-3.074-2.4043.79511.461-0.08130.284
136XX_DA12DA13:DT6DT7_ZZ-0.2380.1953.074-2.183-14.76841.8661.5440.1262.86-19.9222.94544.335
137XX_DA13DG14:DC5DT6_ZZ-0.178-0.7552.926-0.8123.98731.985-1.9860.1932.8177.1981.46632.236
141XX_DA17DC18:DG1DT2_ZZ1.542-1.0163.223.0687.20830.545-3.178-2.2823.04413.407-5.70631.511
145XX_DA22DG23:C11U12_YY-1.491-1.13.759-0.669-0.04829.076-2.1782.83.794-0.0961.33329.083
127XX_DC3DA4:DT15DG16_ZZ-0.648-0.3293.133-0.6082.60835.318-0.9070.983.1124.2911.035.416
129XX_DC5DT6:DA13DG14_ZZ1.607-1.1313.4622.33-20.36737.940.813-1.9263.675-28.897-3.30642.944
132XX_DC8DC9:DG10DG11_ZZ-0.2070.0723.2792.107-8.90840.5031.050.5173.18-12.673-2.99841.482
133XX_DC9DA10:DT9DG10_ZZ0.539-0.2383.3970.022-2.30931.8720.004-0.9753.406-4.197-0.03931.954
135XX_DC11DA12:DT7DG8_ZZ-0.1740.0133.856-0.604-3.91138.5670.5830.1753.839-5.9020.91138.762
139XX_DC15DT16:DA3DG4_ZZ-0.725-1.5823.7722.935-3.27126.836-2.4052.4063.834-6.988-6.27127.187
143XX_DC20DG21:C13G14_YY1.249-0.4813.699-1.65513.36824.976-4.346-2.9682.97428.4233.51928.326
147XX_DC24DG25:C9G10_YY0.285-2.0023.873-1.77313.10322.372-8.154-1.1352.32930.5784.13925.944
149XX_DC26DC27:G7G8_YY-0.434-1.5332.911-7.84719.79349.078-2.7480.0742.22422.6388.97553.234
150XX_DC27DG28:C6G7_YY-1.5450.1442.998-3.45624.22328.905-2.821.9572.54540.5735.78837.701
138XX_DG14DC15:DG4DC5_ZZ-1.219-0.4943.1231.3771.55342.013-0.841.8333.0642.164-1.91942.062
142XX_DG19DC20:G14C15_YY-0.941-1.8563.562-2.15129.62813.99-7.1791.386-0.0765.1644.7332.769
144XX_DG21DA22:U12C13_YY-0.002-1.7843.911-2.75619.2533.084-5.297-0.3662.52730.7274.438.238
146XX_DG23DC24:G10C11_YY-0.312-0.1293.227-0.4257.61933.443-1.3960.4643.12713.0290.72734.278
148XX_DG25DC26:G8C9_YY-0.316-0.9893.219-1.4596.65425.101-3.9360.3212.87914.9613.2825.995
126XX_DT2DC3:DG16DA17_ZZ0.0140.1813.7583.805-14.92746.7351.5070.3123.538-18.245-4.65149.072
130XX_DT6DA7:DT12DA13_ZZ-2.595-0.1493.647-3.086-2.035.9250.0843.6853.852-3.2334.98636.107
140XX_DT16DA17:DT2DA3_ZZ-0.684-0.4123.021-0.0464.96932.04-1.5381.2182.9278.9340.08232.413

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.