4X4P: Base Pair Morphology Parameters

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As of 12-Aug-2022 number of released structures: 12231

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NDB ID: 4X4P PDB ID: 4X4P

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	B_C3:G32_B	-0.063	0.042	-0.55	11.609	-19.818	3.1
1	4	B_C4:G28_B	1.07	-0.037	-0.169	-7.419	-8.199	-28.061
1	6	B_C6:G26_B	-0.354	-0.04	0.315	7.998	-22.95	0.407
1	9	B_C9:G23_B	-0.269	-0.119	-0.585	2.209	-15.976	1.822
1	1	B_G1:C34_B	-0.517	0.227	0.918	-3.295	-6.486	10.384
1	2	B_G2:C33_B	-0.565	0.11	0.766	9.049	-12.24	4.316
1	5	B_G5:C27_B	-0.552	0.0	0.102	5.616	-17.585	8.064
1	7	B_G7:C25_B	0.254	-0.22	0.126	5.3	-2.077	-0.096
1	8	B_G8:C24_B	-0.276	0.126	0.055	-7.536	-23.253	10.935
1	10	B_G11:C21_B	0.104	-0.06	0.492	3.208	-8.243	3.008
1	11	B_G12:C20_B	-0.123	0.369	-0.747	-17.415	-8.918	5.551
1	20	D_A10:U22_D	-1.724	0.041	0.307	6.162	-10.273	11.408
1	14	D_C3:G32_D	0.743	-0.412	0.388	3.296	-16.931	-9.681
1	16	D_C6:G26_D	0.034	0.405	-0.931	17.257	-27.589	10.449
1	19	D_C9:G23_D	-0.93	0.042	0.542	-22.938	0.275	3.891
1	12	D_G1:C34_D	-0.511	0.238	1.821	16.536	2.963	10.767
1	13	D_G2:C33_D	0.246	-0.157	0.94	14.59	-14.043	-0.836
1	15	D_G5:C27_D	-0.298	-0.184	-1.081	-7.571	-19.382	1.397
1	17	D_G7:C25_D	0.187	0.149	0.977	-2.025	-12.602	9.465
1	18	D_G8:C24_D	-0.087	-0.442	-0.943	-19.374	-25.454	-0.776
1	21	D_G11:C21_D	-0.561	-0.505	0.575	-12.212	-22.547	-1.427
1	22	D_G12:C20_D	-0.668	0.225	-1.434	-43.866	-41.211	16.748
1	27	F_A10:U22_F	0.591	-0.284	0.994	-0.287	-6.964	1.367
1	25	F_C3:G32_F	-0.332	0.109	-0.016	10.188	-25.915	3.406
1	26	F_C9:G23_F	-0.4	-0.16	-0.699	-12.617	-4.359	-13.527
1	23	F_G1:C34_F	0.079	-0.315	1.294	14.978	-0.542	-17.038
1	24	F_G2:C33_F	-0.183	0.082	1.151	17.618	-1.589	-3.602
1	28	F_G11:C21_F	0.076	-0.218	0.054	0.745	-18.783	-8.464
1	35	H_A10:U22_H	0.414	0.114	0.492	3.053	-2.223	13.154
1	31	H_C3:G32_H	0.61	0.201	0.177	17.592	-14.302	4.045
1	34	H_C9:G23_H	0.396	-0.204	-0.058	-9.466	-14.99	9.848
1	29	H_G1:C34_H	-0.32	0.092	0.647	6.337	-9.103	2.744
1	30	H_G2:C33_H	1.083	-0.023	1.331	18.916	-7.784	-0.621
1	32	H_G7:C25_H	0.606	-0.654	-1.415	3.696	2.929	-0.312
1	33	H_G8:C24_H	0.061	-0.159	-1.076	-10.901	-30.963	1.354
1	36	H_G11:C21_H	-0.401	-0.482	0.558	1.05	-11.414	-6.954
1	37	H_G12:C20_H	-0.567	-0.509	0.301	1.354	-25.725	3.635
1	38	H_U13:U19_H	4.445	-1.651	-0.079	-22.327	-10.659	-46.389

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.