4X4S: Base Pair Morphology Step Parameters

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As of 29-Jun-2022 number of released structures: 12153

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NDB ID: 4X4S PDB ID: 4X4S

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	10	BB_A10G11:C21U22_BB	-0.155	-1.922	3.281	-1.975	-0.144	33.66	-3.291	-0.055	3.292	-0.249	3.408	33.717
1	3	BB_C3C4:G28G32_BB	-0.136	-2.205	3.463	-5.496	12.268	20.964	-8.403	-1.154	1.881	30.056	13.464	24.863
1	4	BB_C4G5:C27G28_BB	0.269	-1.414	3.469	3.491	6.861	29.127	-4.15	0.208	3.074	13.35	-6.794	30.106
1	6	BB_C6G7:C25G26_BB	1.119	-2.327	3.436	1.148	6.553	12.332	-15.104	-3.615	2.034	27.994	-4.903	14.006
1	9	BB_C9A10:U22G23_BB	0.123	-1.47	3.115	-0.468	9.712	28.285	-4.625	-0.324	2.482	19.172	0.924	29.877
1	1	BB_G1G2:C33C34_BB	-0.067	-1.652	3.247	4.194	0.957	32.635	-3.077	0.823	3.165	1.693	-7.422	32.91
1	2	BB_G2C3:G32C33_BB	0.414	-1.644	3.326	3.872	2.767	34.515	-3.169	-0.099	3.215	4.636	-6.487	34.832
1	5	BB_G5C6:G26C27_BB	-0.774	-0.656	3.578	-2.144	7.694	37.943	-2.008	0.883	3.423	11.675	3.254	38.745
1	7	BB_G7G8:C24C25_BB	1.128	-2.018	2.925	-0.898	12.278	23.376	-6.849	-2.649	1.633	27.956	2.044	26.379
1	8	BB_G8C9:G23C24_BB	0.763	-1.339	3.096	0.396	7.762	40.068	-2.7	-1.055	2.807	11.201	-0.572	40.785
1	11	BB_G11G12:C20C21_BB	-0.23	-1.779	3.856	3.94	7.059	35.768	-3.919	0.974	3.412	11.315	-6.316	36.641
1	12	BB_G12U13:A17C20_BB	-1.555	-2.304	3.047	-2.173	0.25	84.459	-1.719	1.109	3.074	0.186	1.616	84.482
1	18	DD_A10G11:C21U22_DD	-0.241	-2.111	3.044	-7.154	-3.158	31.549	-3.236	-0.786	3.211	-5.699	12.91	32.48
1	17	DD_C9A10:U22G23_DD	0.343	-1.549	3.481	0.2	10.876	27.698	-5.256	-0.628	2.696	21.687	-0.398	29.718
1	13	DD_G1G2:C33C34_DD	0.057	-1.385	3.407	5.08	4.8	32.878	-3.193	0.745	3.153	8.362	-8.85	33.593
1	14	DD_G2C3:G32C33_DD	0.534	-1.639	3.218	2.297	-3.995	32.143	-2.217	-0.544	3.42	-7.169	-4.121	32.463
1	15	DD_G7G8:C24C25_DD	1.311	-1.628	3.684	3.053	23.307	20.452	-7.246	-1.897	1.362	49.107	-6.432	31.063
1	16	DD_G8C9:G23C24_DD	0.102	-1.432	3.65	-0.594	16.885	42.082	-3.434	-0.188	2.898	22.459	0.791	45.204
1	19	DD_G11G12:C20C21_DD	-0.941	-1.651	3.704	5.27	6.928	30.851	-4.312	2.71	3.071	12.708	-9.667	32.027

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.