A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
Search for released structures

NDB ID: 4X4T  PDB ID: 4X4T 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
113B_5BU13:A17_B4.927-2.040.244-0.13912.922-104.101
110B_A10:5BU22_B0.6360.0110.567-9.48-12.813-1.988
13B_C3:G32_B0.235-0.125-0.04311.18-13.976-0.41
14B_C4:G28_B0.264-0.109-0.142-2.323-11.4552.63
16B_C6:G26_B0.099-0.011-0.38717.609-13.37-0.841
19B_C9:G23_B0.15-0.05-0.17-1.067-14.7380.557
114B_C15:G2_I0.534-0.1520.68810.891-26.482-2.966
11B_G1:C31_B-0.5550.0110.5-2.588-2.74-1.879
12B_G2:C33_B-0.055-0.0710.4266.919-12.6752.836
15B_G5:C27_B-0.0450.1610.065-3.421-11.9363.258
17B_G7:C25_B-0.195-0.145-0.589-10.043-9.3751.638
18B_G8:C24_B0.495-0.0760.218-4.831-12.106-1.538
111B_G11:C21_B-0.1850.019-0.483-14.644-16.583-3.78
112B_G12:C20_B-0.439-0.1990.211-14.711-21.4373.483
124D_A10:5BU22_D-0.072-0.2270.53-3.83-4.8421.533
117D_C3:G32_D0.0820.0960.1749.144-16.9794.666
118D_C4:G28_D-0.7040.521-0.0411.789-10.25817.531
120D_C6:G26_D0.4490.4220.274-13.155-1.5428.613
123D_C9:G23_D0.847-0.294-0.479-2.019-12.915-2.879
127D_C15:G2_H0.5-0.179-0.07-12.043-15.034-2.495
115D_G1:C34_D-0.6710.050.381-9.778-5.672-7.821
116D_G2:C33_D-0.520.0610.5588.111-14.8291.11
119D_G5:C27_D-0.3390.1750.099-4.062-17.81713.361
121D_G7:C25_D0.29-0.237-0.5210.474-2.174-2.615
122D_G8:C24_D0.192-0.038-0.4980.325-5.0831.671
125D_G11:C21_D0.1660.004-0.016-3.963-19.698-8.947
126D_G12:C20_D-0.1920.003-0.181-16.065-13.941-2.983
128D_G16:C1_H0.5580.0150.229-12.749-19.707-2.188
131G_C4:G28_G0.557-0.4760.0174.118-16.045-6.136
133G_C6:G26_G-0.065-0.3240.102-0.642-18.212-3.929
136G_C9:G23_G0.274-0.270.05814.768-10.047-4.126
129G_G1:C31_G-0.1430.2320.444-8.311-4.9616.487
130G_G2:5BU30_G0.4370.3150.6958.157-15.198-3.37
132G_G5:C27_G-0.094-0.292-0.115-0.496-9.0-2.324
134G_G7:C25_G0.553-0.1070.394-4.995-16.667-0.529
135G_G8:C24_G0.5890.0420.39412.698-18.432-0.808

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.