A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 4XLS  PDB ID: 4XLS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15O_DA5:DT21_P-0.571-0.2610.1280.331-5.959-0.343
17O_DA7:DT19_P-0.556-0.273-0.736-7.001-20.441-3.831
18O_DA8:DT18_P0.122-0.104-0.496-8.651-27.492-3.806
19O_DA9:DT17_P-0.5830.295-0.108-9.532-23.17912.183
110O_DA10:DT16_P0.7170.3370.657-1.724-26.83610.539
116O_DA16:DT10_P-1.567-0.0440.5260.13-20.0229.731
117O_DA17:DT9_P-0.536-0.2750.2564.423-19.689-2.886
118O_DA18:DT8_P-1.001-0.0130.3324.229-4.163.212
11O_DC1:DG25_P-0.205-0.0121.104-9.67211.97215.602
16O_DC6:DG20_P1.929-0.0690.0135.394.1575.904
124O_DC24:DG2_P-0.913-0.3450.1656.98132.2737.248
14O_DG4:DC22_P-0.793-0.323-0.2635.837-7.067-1.07
111O_DG11:DC15_P-2.179-0.4781.414-3.012-9.11818.347
113O_DG13:DC13_P-2.396-0.4290.19-1.52-1.87911.152
121O_DG21:DC5_P-1.222-0.1760.767-13.720.95410.685
123O_DG23:DC3_P-1.1780.0490.3786.1725.6694.87
12O_DT2:DA24_P-1.227-0.205-0.092-20.724-18.0289.259
13O_DT3:DA23_P-1.0550.306-0.7133.519-7.6165.878
112O_DT12:DA14_P0.3530.0710.512.517-6.7744.736
114O_DT14:DA12_P0.999-0.470.23611.268-11.4670.054
115O_DT15:DA11_P-0.06-0.0470.422-0.23-10.14515.025
119O_DT19:DA7_P0.671-0.2161.106-0.157-22.4225.836
120O_DT20:DA6_P0.4210.1811.066-12.546-25.7261.798
122O_DT22:DA4_P0.486-0.2650.547-5.056-4.458-4.259
129R_DA5:DT21_S-0.525-0.2510.2630.878-7.539-1.673
131R_DA7:DT19_S-0.561-0.304-0.785-6.343-21.696-2.017
132R_DA8:DT18_S0.179-0.096-0.588-9.839-27.715-3.128
133R_DA9:DT17_S-0.4310.188-0.31-10.271-23.52211.45
134R_DA10:DT16_S1.3190.1480.460.439-22.4789.59
140R_DA16:DT10_S-1.6640.1560.562-0.588-21.30513.828
141R_DA17:DT9_S-0.538-0.272-0.007-0.118-20.876-1.509
142R_DA18:DT8_S-1.3250.1310.02-0.919-5.4545.834
125R_DC1:DG25_S0.926-0.476-0.895.62-7.4160.007
130R_DC6:DG20_S1.714-0.131-0.1427.7556.4745.178
148R_DC24:DG2_S-0.206-0.2210.5483.62827.3737.695
128R_DG4:DC22_S-0.048-0.134-0.035.512-14.286-1.968
135R_DG11:DC15_S-2.216-0.4171.512-1.084-13.0918.675
137R_DG13:DC13_S-2.128-0.3390.329-3.756-2.85611.333
145R_DG21:DC5_S-1.6130.0570.885-15.712-4.03914.222
147R_DG23:DC3_S-1.3060.0930.9244.7082.2657.545
126R_DT2:DA24_S-0.95-0.2310.891-17.6311.4184.384
127R_DT3:DA23_S-1.296-0.150.152.554-6.7374.834
136R_DT12:DA14_S0.4580.1760.6241.761-7.8176.039
138R_DT14:DA12_S0.931-0.4770.4999.049-8.269-0.359
139R_DT15:DA11_S0.1420.1871.036-3.876-8.72517.085
143R_DT19:DA7_S1.063-0.1380.757-0.558-24.9435.576
144R_DT20:DA6_S0.8230.0470.905-10.298-23.6610.163
146R_DT22:DA4_S0.558-0.2750.463-5.055-4.914-4.751

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.