4XRM: Base Pair Morphology Parameters

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As of 14-Oct-2020 number of released structures: 11024

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NDB ID: 4XRM PDB ID: 4XRM

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	M_DA6:DT33_L	0.011	-0.2	0.044	2.856	-9.441	6.905
1	7	M_DA8:DT31_L	0.184	-0.066	0.262	11.725	-10.298	-2.4
1	14	M_DA15:DT24_L	-0.174	-0.178	0.066	3.447	-13.462	-0.091
1	15	M_DA16:DT23_L	0.112	-0.097	0.647	17.627	-11.69	2.434
1	2	M_DC3:DG36_L	-0.137	-0.013	0.078	-11.73	-14.413	4.673
1	6	M_DC7:DG32_L	0.476	-0.196	-0.242	14.926	-8.13	-0.722
1	9	M_DC10:DG29_L	0.033	-0.118	0.231	-9.066	-6.324	-1.455
1	13	M_DC14:DG25_L	0.394	-0.171	-0.25	6.181	-6.02	-1.748
1	1	M_DG2:DC37_L	-0.722	-1.013	1.431	3.745	-13.628	-2.681
1	4	M_DG5:DC34_L	-0.233	-0.084	0.126	1.756	-8.325	-0.245
1	8	M_DG9:DC30_L	-0.019	-0.095	0.137	8.169	-6.804	-0.703
1	11	M_DG12:DC27_L	-0.391	-0.194	-0.199	-12.519	-9.203	0.292
1	16	M_DG17:DC22_L	0.058	-0.617	0.644	12.386	-15.393	-0.148
1	3	M_DT4:DA35_L	-0.03	-0.028	0.072	-4.568	-9.287	4.604
1	10	M_DT11:DA28_L	-0.231	-0.153	0.29	-11.826	-10.279	-2.464
1	12	M_DT13:DA26_L	0.127	-0.123	0.099	-4.851	-9.068	8.07

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.