A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: 4XRM  PDB ID: 4XRM 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15M_DA6:DT33_L0.011-0.20.0442.856-9.4416.905
17M_DA8:DT31_L0.184-0.0660.26211.725-10.298-2.4
114M_DA15:DT24_L-0.174-0.1780.0663.447-13.462-0.091
115M_DA16:DT23_L0.112-0.0970.64717.627-11.692.434
12M_DC3:DG36_L-0.137-0.0130.078-11.73-14.4134.673
16M_DC7:DG32_L0.476-0.196-0.24214.926-8.13-0.722
19M_DC10:DG29_L0.033-0.1180.231-9.066-6.324-1.455
113M_DC14:DG25_L0.394-0.171-0.256.181-6.02-1.748
11M_DG2:DC37_L-0.722-1.0131.4313.745-13.628-2.681
14M_DG5:DC34_L-0.233-0.0840.1261.756-8.325-0.245
18M_DG9:DC30_L-0.019-0.0950.1378.169-6.804-0.703
111M_DG12:DC27_L-0.391-0.194-0.199-12.519-9.2030.292
116M_DG17:DC22_L0.058-0.6170.64412.386-15.393-0.148
13M_DT4:DA35_L-0.03-0.0280.072-4.568-9.2874.604
110M_DT11:DA28_L-0.231-0.1530.29-11.826-10.279-2.464
112M_DT13:DA26_L0.127-0.1230.099-4.851-9.0688.07

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.