4XRM: Base Pair Morphology Step Parameters

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NDB ID: 4XRM PDB ID: 4XRM

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	MM_DA6DC7:DG32DT33_LL	-0.793	-0.355	2.962	2.419	6.217	27.638	-1.987	2.108	2.74	12.779	-4.972	28.417
1	7	MM_DA8DG9:DC30DT31_LL	0.753	-0.734	3.379	0.764	-1.046	31.628	-1.145	-1.233	3.418	-1.919	-1.401	31.654
1	14	MM_DA15DA16:DT23DT24_LL	0.175	0.358	3.004	-5.606	4.631	30.744	-0.135	-1.281	2.948	8.584	10.392	31.572
1	15	MM_DA16DG17:DC22DT23_LL	0.085	0.516	3.508	-0.538	-4.213	37.488	1.378	-0.205	3.43	-6.53	0.833	37.72
1	2	MM_DC3DT4:DA35DG36_LL	0.789	0.669	3.166	-0.005	4.492	32.167	0.422	-1.413	3.227	8.057	0.009	32.47
1	6	MM_DC7DA8:DT31DG32_LL	-0.862	0.496	3.387	-4.403	4.623	38.889	0.156	0.728	3.494	6.887	6.559	39.39
1	9	MM_DC10DT11:DA28DG29_LL	-0.686	-0.728	3.361	-0.248	-1.311	31.382	-1.091	1.219	3.393	-2.423	0.458	31.41
1	13	MM_DC14DA15:DT24DG25_LL	-0.119	1.583	3.382	0.928	0.321	41.718	2.188	0.268	3.39	0.45	-1.303	41.73
1	1	MM_DG2DC3:DG36DC37_LL	-0.353	0.382	4.025	11.6	-6.231	42.503	1.205	1.771	3.721	-8.358	-15.56	44.406
1	4	MM_DG5DA6:DT33DC34_LL	0.822	-0.348	3.313	0.991	2.936	33.699	-1.077	-1.25	3.294	5.05	-1.706	33.837
1	8	MM_DG9DC10:DG29DC30_LL	-0.042	-1.173	3.609	-0.715	1.106	40.316	-1.839	-0.028	3.577	1.604	1.037	40.336
1	11	MM_DG12DT13:DA26DC27_LL	0.828	-0.35	3.069	-3.023	6.995	28.427	-2.06	-2.223	2.804	13.93	6.02	29.411
1	3	MM_DT4DG5:DC34DA35_LL	-0.399	1.021	3.212	-3.005	1.499	37.69	1.383	0.232	3.27	2.314	4.64	37.834
1	10	MM_DT11DG12:DC27DA28_LL	0.884	0.627	3.293	4.828	4.32	39.16	0.402	-0.721	3.421	6.392	-7.144	39.671
1	12	MM_DT13DC14:DG25DA26_LL	-0.808	-0.208	3.048	3.447	4.607	31.169	-1.157	2.061	2.885	8.484	-6.346	31.683

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.