A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
Search for released structures

NDB ID: 4YM6  PDB ID: 4YM6 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT290_J2.119-0.675-1.002-4.5313.374-10.45
14I_DA4:DT287_J0.528-0.165-0.5135.78-26.407-2.712
15I_DA5:DT286_J0.11-0.165-0.6322.317-28.0660.486
17I_DA7:DT284_J1.714-0.312-0.1349.136-32.851-4.791
111I_DA11:DT280_J-0.572-0.2750.3725.212-22.668-14.61
117I_DA17:DT274_J0.096-0.050.0771.477-15.161-0.093
119I_DA19:DT272_J0.134-0.0640.29-10.815-9.6180.101
124I_DA24:DT267_J-0.029-0.1370.366-5.493-12.265-6.661
126I_DA27:DT264_J1.1140.039-0.375-25.538-19.635-11.609
127I_DA28:DT263_J1.301-0.368-1.5-37.735-28.4275.325
132I_DA35:DT257_J-0.051-0.120.493-19.8470.419-0.915
138I_DA41:DT251_J0.549-0.0640.10413.336-19.006-3.002
139I_DA42:DT250_J-0.069-0.037-0.386-14.1846.446-6.941
140I_DA43:DT249_J-0.392-0.152-0.027-4.995-6.981-7.433
148I_DA51:DT241_J-0.963-0.296-0.825-27.161-14.8574.176
151I_DA54:DT238_J-0.692-0.236-0.844-17.527-23.879-5.002
152I_DA55:DT237_J1.295-0.325-0.438-6.097-22.32.234
153I_DA56:DT236_J0.739-0.144-0.6064.246-26.806-1.949
154I_DA57:DT235_J0.003-0.126-0.563-11.353-34.391-0.989
158I_DA61:DT231_J0.522-0.017-0.511-25.196-18.21-3.878
164I_DA67:DT225_J0.226-0.0870.164-5.367-29.956-8.068
169I_DA72:DT220_J0.648-0.219-0.5565.978-33.635-3.363
170I_DA73:DT219_J0.086-0.094-0.626-15.536-5.484-2.191
174I_DA77:DT215_J-0.369-0.3060.821-6.801-24.003-20.47
179I_DA82:DT210_J-0.173-0.322-1.296-16.283-14.02510.601
180I_DA83:DT209_J-0.443-0.189-0.981-15.076-23.299-3.704
182I_DA85:DT207_J-0.353-0.518-1.65-17.076-28.9435.086
192I_DA95:DT197_J-0.185-0.179-0.733-5.846-8.9462.988
196I_DA99:DT193_J1.061-0.0880.1236.025-36.087-14.66
199I_DA102:DT190_J0.738-0.186-0.4185.204-12.4112.482
1106I_DA109:DT183_J0.525-0.081-0.546-1.874-19.528-1.514
1107I_DA110:DT182_J0.239-0.239-0.706-8.091-36.3061.943
1108I_DA111:DT181_J0.4580.0010.02725.013-13.319-0.63
1110I_DA113:DT179_J-0.414-0.24-0.1358.586-23.6711.74
1112I_DA115:DT177_J0.128-0.17-0.59113.831-17.8512.511
1119I_DA123:DT168_J0.523-0.0510.04224.092-23.054-2.326
1121I_DA125:DT166_J1.067-0.171-0.1758.272-21.2312.863
1122I_DA126:DT165_J0.328-0.065-0.481-13.054-15.108-1.864
1128I_DA132:DT159_J-0.676-0.2930.0774.991-10.476-0.822
1134I_DA138:DT153_J-0.143-0.1040.0545.574-33.872-10.87
1136I_DA140:DT151_J0.628-0.0290.1848.219-8.994-5.687
1140I_DA144:DT147_J-0.595-0.3460.65216.91-22.488-8.884
13I_DC3:DG288_J-0.016-0.102-0.98116.952-1.773-2.368
19I_DC9:DG282_J0.095-0.0870.374-0.666-21.7850.117
110I_DC10:DG281_J-0.063-0.068-0.13713.947-24.32-0.473
112I_DC12:DG279_J-0.584-0.2520.73710.171-18.046-10.338
113I_DC13:DG278_J-0.332-0.0890.019-10.989-21.1470.225
116I_DC16:DG275_J0.217-0.150.092-1.625-19.121-2.332
122I_DC22:DG269_J-0.035-0.0890.214-21.79-16.1-0.033
125I_DC26:DG265_J-0.286-0.0820.1384.037-29.669-1.109
141I_DC44:DG248_J0.02-0.1630.613-4.1920.452-2.804
144I_DC47:DG245_J-1.206-0.1720.17-5.424-21.8710.247
146I_DC49:DG243_J-0.459-0.126-0.5499.547-20.1652.65
147I_DC50:DG242_J-0.349-0.037-0.59418.567-24.9283.284
150I_DC53:DG239_J-0.301-0.08-0.4495.189-21.0182.966
157I_DC60:DG232_J0.768-0.183-0.2822.157-13.324-0.329
163I_DC66:DG226_J0.143-0.055-0.3223.364-11.4031.395
166I_DC69:DG223_J0.546-0.1520.1258.868-15.862-2.135
173I_DC76:DG216_J0.023-0.101-0.156-6.629-18.8143.138
176I_DC79:DG213_J0.011-0.1980.913-9.015-16.686-5.736
181I_DC84:DG208_J-0.194-0.1-1.14823.559-13.4631.93
185I_DC88:DG204_J0.087-0.2010.716-2.89-18.369-5.662
186I_DC89:DG203_J0.394-0.1230.185-11.288-6.115-2.582
198I_DC101:DG191_J0.92-0.3960.324.367-17.699-2.418
1104I_DC107:DG185_J0.305-0.0850.025-3.326-8.092.29
1105I_DC108:DG184_J-0.436-0.230.95-3.472-7.311-5.252
1111I_DC114:DG178_J0.049-0.1130.325-5.127-10.608-1.586
1113I_DC116:DG176_J0.842-0.2610.32928.902-5.619-1.032
1124I_DC128:DG163_J-1.01-0.0840.328-14.71-4.038-1.796
1127I_DC131:DG160_J-0.182-0.126-1.14535.478-30.7556.611
115I_DG15:DC276_J-1.058-0.334-0.182-13.754-9.597-0.99
118I_DG18:DC273_J-0.726-0.256-0.622-11.882-22.4214.546
128I_DG31:T64262_J-2.1952.5710.959-31.307-39.9352.518
130I_DG33:DC259_J-0.112-0.0670.147-1.708-16.451-0.698
136I_DG39:DC253_J-0.185-0.136-0.729-15.582-1.096-1.188
137I_DG40:DC252_J-0.531-0.2430.2366.925-17.735-1.853
143I_DG46:DC246_J-0.249-0.1340.2615.082-16.915-0.833
155I_DG58:DC234_J-0.282-0.3621.037-0.219-11.277-4.803
156I_DG59:DC233_J-0.116-0.0780.57317.79-5.692-1.496
160I_DG63:DC229_J0.076-0.04-0.16-16.4871.585-3.087
165I_DG68:DC224_J0.177-0.009-0.138-10.389-4.9070.599
168I_DG71:DC221_J-0.387-0.294-0.784-3.944-13.5880.826
175I_DG78:DC214_J1.28-0.4011.0225.2458.4746.228
178I_DG81:DC211_J-0.834-0.280.128-4.1-9.51.025
184I_DG87:DC205_J-0.393-0.24-1.033-6.105-1.2851.535
191I_DG94:DC198_J0.105-0.114-0.927-14.313-22.4795.392
194I_DG97:DC195_J-0.569-0.2670.72920.611-16.46-3.634
195I_DG98:DC194_J-0.894-0.3050.07513.169-14.9152.296
197I_DG100:DC192_J0.121-0.0340.42219.79611.9561.551
1100I_DG103:DC189_J0.451-0.065-0.3619.265-14.4451.565
1116I_DG120:DC171_J-0.15-0.1871.65634.6789.1860.151
1117I_DG121:DC170_J-0.203-0.0890.15524.6280.49-2.771
1120I_DG124:DC167_J0.712-0.1010.4476.593-12.707-3.006
1126I_DG130:DC161_J-0.3540.99-0.832-28.553-36.33938.892
1129I_DG133:DC158_J0.52-0.037-0.04517.230.763-4.256
1130I_DG134:DC157_J0.686-0.166-0.6251.295-10.6440.013
1132I_DG136:DC155_J-0.639-0.334-0.948-13.195-26.489.272
1133I_DG137:DC154_J-0.392-0.027-0.475-21.209-11.6641.514
1139I_DG143:DC148_J-1.283-0.6710.59113.611-20.55-2.282
12I_DT2:DA289_J1.326-0.935-1.44316.149-2.813-11.195
16I_DT6:DA285_J1.205-0.5090.14112.679-8.022-0.97
18I_DT8:DA283_J-0.118-0.084-0.3722.521-24.1350.748
114I_DT14:DA277_J0.736-0.469-0.9860.376-47.151.815
120I_DT20:DA271_J0.191-0.195-0.559-2.235-27.0693.037
121I_DT21:DA270_J-0.431-0.11-0.314-12.731-33.221-0.319
123I_DT23:DA268_J-1.53-0.2660.867-17.031-16.876-10.033
129I_DT32:DA260_J-0.785-0.033-0.84718.08-13.611-2.827
131I_DT34:DA258_J-0.215-0.123-0.131-13.814-26.636-0.262
133I_DT36:DA256_J0.362-0.4161.114-6.691-10.394-2.471
134I_DT37:DA255_J-0.184-0.188-0.76110.182-39.1164.214
135I_DT38:DA254_J-0.92-0.0960.352-5.99-29.706-13.864
142I_DT45:DA247_J-0.927-0.108-0.387.74-28.886-5.308
145I_DT48:DA244_J-0.041-0.165-0.4521.836-34.278-0.505
149I_DT52:DA240_J-0.791-0.089-0.21610.803-36.555-13.969
159I_DT62:DA230_J-0.124-0.265-1.054-8.229-11.855-0.382
161I_DT64:DA228_J0.771-0.3610.293-8.404-15.652-0.937
162I_DT65:DA227_J-0.488-0.0860.286-13.643-17.6030.733
167I_DT70:DA222_J-0.655-0.109-0.2792.548-18.691-0.872
171I_DT74:DA218_J-0.295-0.155-0.8394.184-10.0233.817
172I_DT75:DA217_J-1.906-0.639-0.671-9.104-25.5491.319
177I_DT80:DA212_J-0.718-0.047-0.244-6.188-20.786-2.3
183I_DT86:DA206_J-1.005-0.547-1.239-0.099-22.9496.712
187I_DT90:DA202_J-0.251-0.060.2320.129-20.753-2.665
188I_DT91:DA201_J-0.299-0.097-0.4334.93-22.8550.755
189I_DT92:DA200_J1.197-0.7-0.8273.549-30.6766.987
190I_DT93:DA199_J0.973-0.502-0.787-0.48-20.199-0.491
193I_DT96:DA196_J0.222-0.107-0.28615.798-19.28-4.564
1101I_DT104:DA188_J-0.767-0.0030.239-0.5430.832-5.318
1102I_DT105:DA187_J-0.46-0.042-0.4-3.257-10.389-3.315
1103I_DT106:DA186_J-0.311-0.046-0.306-1.21-22.204-3.717
1109I_DT112:DA180_J0.039-0.032-0.62924.042-23.1731.597
1114I_DT118:DA173_J0.528-0.025-2.2142.209-35.625-2.82
1115I_DT119:DA172_J-1.155-0.251-0.73717.98-44.173-6.721
1118I_DT122:DA169_J0.658-0.059-0.42536.087-17.327-7.964
1123I_DT127:DA164_J-0.797-0.0770.4714.02-11.3-5.948
1125I_DT129:DA162_J0.462-0.257-0.157-9.681-29.54-2.689
1131I_DT135:DA156_J-0.045-0.1880.952-1.794-2.601-6.518
1135I_DT139:DA152_J0.065-0.1570.0940.422-25.778-3.269
1137I_DT141:DA150_J0.059-0.038-1.1430.53-17.0944.004
1138I_DT142:DA149_J-0.343-0.089-1.16423.406-21.9292.165
1141I_DT145:DA146_J-1.39-0.1180.1328.567-0.124-10.998

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.