4Z2C: Base Pair Morphology Step Parameters

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NDB ID: 4Z2C PDB ID: 4Z2C

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	EE_DA7DC8:DG12DT13_FF	0.216	-0.278	2.938	-1.577	0.342	27.382	-0.661	-0.805	2.917	0.722	3.329	27.428
1	8	EE_DA14DT15:DA5DT6_FF	-0.489	-1.555	3.037	6.823	2.81	29.66	-3.449	2.134	2.704	5.384	-13.074	30.544
1	2	EE_DC8DG9:DC11DG12_FF	-0.136	-0.801	3.759	-2.998	13.087	34.616	-3.212	-0.234	3.256	21.041	4.821	37.054
1	3	EE_DG9DT10:DA10DC11_FF	-0.244	-0.415	2.766	1.165	6.794	26.764	-2.239	0.747	2.571	14.376	-2.466	27.622
1	6	EE_DG12DT13:DA7DC8_FF	-1.054	0.03	2.387	-10.593	6.53	19.668	-1.755	-0.352	2.507	17.08	27.711	23.241
1	4	EE_DT10DT11:DA9DA10_FF	-0.09	0.355	3.16	4.455	8.093	32.869	-0.652	0.846	3.119	13.962	-7.686	34.108
1	5	EE_DT11DG12:DC8DA9_FF	0.256	1.395	5.95	7.094	49.839	22.546	-5.152	0.671	3.808	66.742	-9.499	54.858
1	7	EE_DT13DA14:DT6DA7_FF	1.163	-1.033	3.524	-2.577	11.531	34.809	-3.246	-2.206	2.955	18.623	4.162	36.701
1	10	HH_DA2DT3:DA2DT3_FF	-0.153	-0.01	2.796	-1.39	2.611	28.303	-0.532	0.039	2.788	5.321	2.832	28.454
1	13	HH_DA5DT6:DA14DT15_GG	1.124	-0.927	2.963	-2.639	8.143	32.052	-2.802	-2.352	2.559	14.429	4.675	33.147
1	15	HH_DA7DC8:DG12DT13_GG	1.03	0.304	2.399	9.596	6.057	21.311	-0.849	0.034	2.605	15.078	-23.89	24.113
1	17	HH_DA9DA10:DT10DT11_GG	-0.125	0.17	2.984	-5.282	5.375	29.993	-0.64	-0.708	2.948	10.185	10.008	30.904
1	18	HH_DA10DC11:DG9DT10_GG	-0.427	0.035	2.554	7.925	3.898	28.379	-0.559	2.108	2.336	7.718	-15.691	29.694
1	12	HH_DC4DA5:DT15DG1_GF	-2.276	-0.978	7.041	-16.834	28.661	8.67	-11.94	-2.182	2.103	65.351	38.383	34.321
1	16	HH_DC8DA9:DT11DG12_GG	-0.383	1.273	5.77	-10.213	54.09	22.112	-4.815	-0.764	3.464	68.583	12.95	58.997
1	9	HH_DG1DA2:DT3DC4_FF	-1.142	1.17	2.449	-8.139	3.746	40.614	1.331	0.92	2.711	5.318	11.556	41.55
1	11	HH_DT3DC4:DG1DA2_FF	0.988	0.472	2.794	0.297	2.312	34.807	0.485	-1.609	2.827	3.86	-0.496	34.882
1	14	HH_DT6DA7:DT13DA14_GG	-1.474	-0.825	3.376	-2.574	11.124	32.722	-3.12	2.077	3.046	19.036	4.404	34.605

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.