4ZM0: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 4ZM0 PDB ID: 4ZM0

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	E_DA9:DT7_F	-0.041	-0.094	0.209	2.745	-0.374	1.099
1	9	E_DA11:DT5_F	-0.088	-0.086	0.073	1.549	-1.976	1.815
1	11	E_DA13:DT3_F	-0.093	0.016	0.158	-0.729	-6.084	4.692
1	8	E_DC10:DG6_F	0.631	0.109	0.221	3.119	-10.417	8.531
1	10	E_DC12:DG4_F	0.118	0.006	0.159	4.412	-3.92	4.278
1	3	E_DG5:DC11_F	-0.153	-0.08	0.113	-4.227	-3.185	3.683
1	5	E_DG7:DC9_F	-0.779	0.06	0.256	-1.517	-12.496	8.319
1	1	E_DT3:DA13_F	-0.025	-0.005	0.168	-1.16	-1.444	4.439
1	2	E_DT4:DA12_F	-0.035	-0.032	0.104	3.122	-3.688	4.966
1	4	E_DT6:DA10_F	0.125	-0.097	0.099	-2.409	-1.092	2.266
1	6	E_DT8:DA8_F	0.145	-0.115	0.218	-5.073	-1.836	1.028
1	12	E_DT14:DA2_F	-0.074	0.052	0.134	-0.122	-6.691	5.543
1	21	G_DA9:DT7_H	-0.125	-0.08	0.2	3.783	-0.359	1.06
1	23	G_DA11:DT5_H	-0.127	-0.11	0.122	2.578	-0.73	2.838
1	25	G_DA13:DT3_H	-0.013	-0.037	0.053	-2.43	-5.749	7.977
1	14	G_DC2:DG14_H	0.197	-0.035	0.192	-0.66	-9.284	1.293
1	22	G_DC10:DG6_H	0.563	0.094	0.186	4.082	-10.12	8.333
1	24	G_DC12:DG4_H	0.171	-0.053	0.144	5.169	-2.917	6.455
1	13	G_DG1:DC1_F	0.152	-0.116	-0.333	0.551	15.764	-3.666
1	17	G_DG5:DC11_H	-0.088	-0.017	0.077	-4.428	-4.507	2.985
1	19	G_DG7:DC9_H	-0.856	0.109	0.274	-1.03	-13.678	8.73
1	15	G_DT3:DA13_H	0.092	0.05	0.157	-1.775	-6.505	3.967
1	16	G_DT4:DA12_H	0.08	0.053	0.05	2.229	-4.809	4.12
1	18	G_DT6:DA10_H	0.113	-0.062	0.069	-2.149	-2.365	1.956
1	20	G_DT8:DA8_H	0.063	-0.069	0.238	-4.115	-2.587	1.504
1	26	G_DT14:DA2_H	0.102	0.049	0.019	-1.812	-4.364	9.84

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.