4ZTF: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 4ZTF PDB ID: 4ZTF

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	C_DA7:DT13_D	-0.078	-0.181	-0.007	0.435	-15.674	-1.585
1	8	C_DA11:DT9_D	0.036	-0.294	-0.089	4.079	-19.905	2.194
1	9	C_DA12:DT8_D	0.236	-0.142	0.239	-0.644	-13.875	4.511
1	16	C_DA19:DT1_D	0.8	-0.084	-0.402	-1.466	-13.484	20.279
1	3	C_DC6:DG14_D	0.065	-0.172	-0.118	0.235	2.176	-0.418
1	13	C_DC16:DG4_D	0.151	-0.132	-0.057	-9.386	-12.457	-0.044
1	15	C_DC18:DG2_D	0.229	-0.189	-0.03	6.353	-3.573	0.583
1	1	C_DG4:DC16_D	-0.193	-0.004	-0.679	-29.491	-15.199	1.474
1	6	C_DG9:DC11_D	-0.256	-0.171	0.16	9.994	4.572	-2.337
1	7	C_DG10:DC10_D	-0.461	-0.183	0.133	14.367	-9.257	0.169
1	14	C_DG17:DC3_D	-0.277	-0.3	0.152	-1.054	-10.383	-1.026
1	2	C_DT5:DA15_D	0.045	-0.169	-0.039	-16.688	-4.371	3.129
1	5	C_DT8:DA12_D	0.053	-0.155	0.102	-6.594	-16.137	5.946
1	10	C_DT13:DA7_D	0.139	-0.179	0.25	-3.343	-15.721	3.112
1	11	C_DT14:DA6_D	-0.196	-0.262	-0.036	-4.649	-18.153	2.277
1	12	C_DT15:DA5_D	-0.241	-0.207	-0.175	-5.423	-15.585	-0.358

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.