A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
Search for released structures

NDB ID: NA1409  PDB ID: 4A3B 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
4A3B|1|P|A|104A3B|1|P|A|100BPh
4A3B|1|P|A|104A3B|1|P|G|9s53
4A3B|1|P|A|74A3B|1|P|G|8s35
4A3B|1|P|G|84A3B|1|P|A|7s53
4A3B|1|P|G|84A3B|1|P|G|9s35
4A3B|1|P|G|94A3B|1|P|A|10s35
4A3B|1|P|G|94A3B|1|P|G|8s53
4A3B|1|P|G|94A3B|1|P|G|90BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (2)Relative Frequency
0BPh21.000
Base-StackingCount (1)Relative Frequency
s5311.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)