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NDB ID: NA2200  PDB ID: 4IQX 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
4IQX|1|B|A|9034IQX|1|B|A|903n0BP
4IQX|1|B|A|9034IQX|1|B|U|904ns35
4IQX|1|B|C|9084IQX|1|B|C|9080BPh
4IQX|1|B|C|9084IQX|1|B|C|909s35
4IQX|1|B|C|9084IQX|1|B|G|907s53
4IQX|1|B|C|9084IQX|1|C|G|917cWW
4IQX|1|B|C|9094IQX|1|B|C|908s53
4IQX|1|B|C|9094IQX|1|B|C|9090BPh
4IQX|1|B|C|9094IQX|1|C|G|916cWW
4IQX|1|B|C|9094IQX|1|C|G|917s55
4IQX|1|B|G|9054IQX|1|B|G|9050BPh
4IQX|1|B|G|9054IQX|1|B|G|906s35
4IQX|1|B|G|9054IQX|1|B|U|904s53
4IQX|1|B|G|9054IQX|1|C|C|920cWW
4IQX|1|B|G|9064IQX|1|B|G|905s53
4IQX|1|B|G|9064IQX|1|B|G|9060BPh
4IQX|1|B|G|9064IQX|1|B|G|907s35
4IQX|1|B|G|9064IQX|1|C|C|919cWW
4IQX|1|B|G|9064IQX|1|C|C|920ns55
4IQX|1|B|G|9074IQX|1|B|C|908s35
4IQX|1|B|G|9074IQX|1|B|G|906s53
4IQX|1|B|G|9074IQX|1|B|G|9070BPh
4IQX|1|B|G|9074IQX|1|C|C|918cWW
4IQX|1|B|G|9074IQX|1|C|C|919s55
4IQX|1|B|U|9044IQX|1|B|A|903ns53
4IQX|1|B|U|9044IQX|1|B|G|905s35
4IQX|1|B|U|9044IQX|1|B|U|9040BPh
4IQX|1|B|U|9044IQX|1|C|C|920ncWW
4IQX|1|C|C|9184IQX|1|B|G|907cWW
4IQX|1|C|C|9184IQX|1|C|C|9180BPh
4IQX|1|C|C|9184IQX|1|C|C|919s35
4IQX|1|C|C|9184IQX|1|C|G|917s53
4IQX|1|C|C|9194IQX|1|B|G|906cWW
4IQX|1|C|C|9194IQX|1|B|G|907s55
4IQX|1|C|C|9194IQX|1|C|C|918s53
4IQX|1|C|C|9194IQX|1|C|C|9190BPh
4IQX|1|C|C|9194IQX|1|C|C|920s35
4IQX|1|C|C|9204IQX|1|B|G|905cWW
4IQX|1|C|C|9204IQX|1|B|G|906ns55
4IQX|1|C|C|9204IQX|1|B|U|904ncWW
4IQX|1|C|C|9204IQX|1|C|C|919s53
4IQX|1|C|C|9204IQX|1|C|C|9200BPh
4IQX|1|C|G|9164IQX|1|B|C|909cWW
4IQX|1|C|G|9164IQX|1|C|G|9160BPh
4IQX|1|C|G|9164IQX|1|C|G|917s35
4IQX|1|C|G|9174IQX|1|B|C|908cWW
4IQX|1|C|G|9174IQX|1|B|C|909s55
4IQX|1|C|G|9174IQX|1|C|C|918s35
4IQX|1|C|G|9174IQX|1|C|G|916s53
4IQX|1|C|G|9174IQX|1|C|G|9170BPh


Base-PairsCount (5)Relative Frequency
cWW51.000
Base-PhosphateCount (11)Relative Frequency
0BPh111.000
Base-StackingCount (5)Relative Frequency
s5330.600
s5520.400

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)