A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
Search for released structures

NDB ID: 5AV5  PDB ID: 5AV5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA-73:DT73_J-0.293-0.344-0.127-3.7685.334-2.746
14I_DA-70:DT70_J0.3190.1460.3655.807-14.7338.718
15I_DA-69:DT69_J0.23-0.1650.47.873-14.7472.714
17I_DA-67:DT67_J0.626-0.2420.2231.413-15.825-4.33
111I_DA-63:DT63_J0.446-0.0490.0322.345-11.815-6.424
117I_DA-57:DT57_J-0.3420.0280.9488.314-25.3347.2
119I_DA-55:DT55_J-0.8140.0420.146-2.088-19.1943.256
121I_DA-53:DT53_J-0.449-0.078-0.235-7.579-15.819-4.457
124I_DA-50:DT50_J0.3350.394-0.615-22.105-24.687-1.125
127I_DA-47:DT47_J0.123-0.2720.44221.175-26.331-3.418
128I_DA-46:DT46_J1.086-0.0560.37515.02-32.426-5.245
129I_DA-45:DT45_J-0.363-0.1330.3098.385-27.956.141
130I_DA-44:DT44_J0.5570.1010.02-1.637-16.9826.212
135I_DA-39:DT39_J-0.319-0.209-0.145-9.305-17.215-3.199
141I_DA-33:DT33_J-0.3820.1060.44813.069-21.4985.946
142I_DA-32:DT32_J0.725-0.1490.0494.215-25.8344.114
143I_DA-31:DT31_J-0.1490.1570.499-0.823-14.7881.156
151I_DA-23:DT23_J-0.494-0.272-0.129-6.63-16.4424.157
154I_DA-20:DT20_J-0.6660.172-0.628-15.991-10.7522.015
155I_DA-19:DT19_J0.5270.187-0.3682.202-3.04915.828
156I_DA-18:DT18_J-0.753-0.0490.1446.672-28.5313.801
157I_DA-17:DT17_J-0.351-0.1350.389-2.996-34.832-1.416
161I_DA-13:DT13_J-0.5040.0150.181-15.748-7.0912.7
167I_DA-7:DT7_J0.444-0.278-0.0544.273-13.242-1.268
173I_DA-1:DT1_J0.334-0.1560.420.908-10.454-1.458
174I_DA0:DT0_J1.072-0.2840.209-4.511-14.5543.38
178I_DA4:DT-4_J0.6430.0670.3853.605-30.969-5.15
183I_DA9:DT-9_J0.028-0.047-0.1063.76-17.9570.827
184I_DA10:DT-10_J0.232-0.127-0.634-1.542-17.7125.661
186I_DA12:DT-12_J0.090.050.2771.054-17.0684.38
196I_DA22:DT-22_J0.019-0.059-0.135-6.579-1.9611.914
1100I_DA26:DT-26_J0.835-0.0820.6944.192-32.673-2.488
1103I_DA29:DT-29_J-0.5620.081-0.524-19.643-17.38916.345
1110I_DA36:DT-36_J-0.666-0.3760.7646.703-12.847-1.232
1111I_DA37:DT-37_J0.588-0.2120.70915.97-10.053-0.786
1112I_DA38:DT-38_J0.041-0.292-0.00110.157-10.5341.421
1114I_DA40:DT-40_J-0.427-0.189-0.329-15.814-11.5042.696
1116I_DA42:DT-42_J0.202-0.406-0.1142.708-16.878-3.374
1124I_DA51:DT-51_J0.145-0.31-0.4051.219-16.176-5.845
1127I_DA54:DT-54_J-0.341-0.1510.675-3.093-7.1565.04
1133I_DA60:DT-60_J-0.43-0.1030.3811.459-23.9043.756
1139I_DA66:DT-66_J-0.236-0.0870.347-0.185-10.0773.779
1141I_DA68:DT-68_J0.5-0.284-0.049-14.465-7.589-1.883
1145I_DA72:DT-72_J0.065-0.010.32.118-16.0846.306
13I_DC-71:DG71_J0.2870.01-0.5027.371-8.058.83
19I_DC-65:DG65_J-0.3520.0760.526-8.475-11.8568.576
110I_DC-64:DG64_J-0.0240.01-0.0492.474-6.2851.782
112I_DC-62:DG62_J0.869-0.1070.2436.53-11.7269.525
113I_DC-61:DG61_J-0.4160.2540.487-6.199-11.96513.289
116I_DC-58:DG58_J0.708-0.1180.1048.241-4.7562.852
122I_DC-52:DG52_J-0.47-0.332-0.68718.04-14.188-2.094
125I_DC-49:DG49_J0.940.1120.2623.749-13.3227.447
126I_DC-48:DG48_J0.1340.417-0.43521.697-13.1211.933
144I_DC-30:DG30_J-0.0460.222-0.26814.452-17.8082.298
147I_DC-27:DG27_J0.2160.0790.288-6.533-14.1866.415
149I_DC-25:DG25_J0.294-0.038-0.32-9.1863.0677.571
150I_DC-24:DG24_J0.8470.058-0.024-1.209-17.6453.309
153I_DC-21:DG21_J0.83-0.207-0.3584.244-27.28513.937
160I_DC-14:DG14_J-0.5870.1620.027-18.168-8.86711.338
166I_DC-8:DG8_J0.0680.038-0.084.78-15.817.271
169I_DC-5:DG5_J-0.101-0.2850.393-2.831-1.7223.997
176I_DC2:DG-2_J-0.017-0.0910.278-9.174-12.8453.34
177I_DC3:DG-3_J0.28-0.0590.0863.493-8.7563.7
180I_DC6:DG-6_J0.009-0.1320.5260.772-34.128-0.546
185I_DC11:DG-11_J-0.363-0.052-0.2710.34-17.2898.454
189I_DC15:DG-15_J0.3220.0611.201-1.387-32.1942.314
190I_DC16:DG-16_J0.171-0.1570.58-12.549-11.558-1.91
1102I_DC28:DG-28_J0.3640.1380.175.822-30.5523.511
1108I_DC34:DG-34_J0.3510.3960.734-18.127-0.42112.772
1109I_DC35:DG-35_J0.548-0.160.51910.598-12.590.942
1115I_DC41:DG-41_J-0.225-0.1460.029-0.4280.064.895
1117I_DC43:DG-43_J0.96-0.1470.2642.496-12.175-0.391
1129I_DC56:DG-56_J-1.0140.5261.309-7.304-20.35514.669
1132I_DC59:DG-59_J0.5810.2880.3777.998-9.5989.686
115I_DG-59:DC59_J-0.924-0.0260.072-11.458-5.979-0.658
118I_DG-56:DC56_J1.6780.3530.6118.441-17.288.484
131I_DG-43:DC43_J-0.6490.229-0.09-10.018-15.4298.767
133I_DG-41:DC41_J-0.762-0.274-0.541-9.212-10.3025.808
139I_DG-35:DC35_J-1.02-0.2580.555-9.556-20.0760.722
140I_DG-34:DC34_J-0.7250.120.3912.20110.5417.262
146I_DG-28:DC28_J-0.422-0.0230.1170.692-30.0462.657
158I_DG-16:DC16_J-0.815-0.1060.58912.2710.8537.392
159I_DG-15:DC15_J-0.083-0.1461.114-5.271-35.799-0.808
163I_DG-11:DC11_J-0.3750.084-0.279-22.056-13.3953.972
168I_DG-6:DC6_J-0.088-0.2380.490.09-28.922-2.495
171I_DG-3:DC3_J-0.5080.0590.292-5.238-9.4817.365
172I_DG-2:DC2_J0.0970.1260.3786.803-8.2547.505
179I_DG5:DC-5_J0.123-0.0420.2683.286-5.5054.777
182I_DG8:DC-8_J-0.1240.0310.1820.518-11.8387.825
188I_DG14:DC-14_J0.028-0.190.5465.7543.7114.071
195I_DG21:DC-21_J-0.567-0.0980.1880.41-17.0912.69
198I_DG24:DC-24_J-0.3090.0990.29.849-21.7812.126
199I_DG25:DC-25_J0.05-0.2290.0257.3890.24.229
1101I_DG27:DC-27_J-0.654-0.0340.87512.577-2.5427.528
1104I_DG30:DC-30_J0.620.170.296-4.964-7.8859.604
1122I_DG48:DC-48_J-0.3360.3870.565-2.401-4.779.512
1123I_DG49:DC-49_J-0.5460.3320.4724.573-8.7175.715
1125I_DG52:DC-52_J0.331-0.448-0.32-6.452-16.797-3.891
1131I_DG58:DC-58_J-0.410.120.194-12.866-11.2894.754
1134I_DG61:DC-61_J0.120.1020.46611.933-15.7469.706
1135I_DG62:DC-62_J-0.112-0.128-0.334-10.7-18.349-1.008
1137I_DG64:DC-64_J0.0-0.112-0.162-1.263-11.608-2.581
1138I_DG65:DC-65_J0.6480.18-0.1545.121-17.20910.239
1144I_DG71:DC-71_J-0.751-0.067-0.2361.678-4.3548.864
12I_DT-72:DA72_J-0.502-0.157-0.4014.051-11.6540.31
16I_DT-68:DA68_J-0.258-0.1830.08116.628-10.6513.735
18I_DT-66:DA66_J0.347-0.1450.072-0.431-14.298-0.74
114I_DT-60:DA60_J-0.182-0.1320.169-1.742-23.4913.168
120I_DT-54:DA54_J-0.1290.0370.4594.614-11.4134.917
123I_DT-51:DA51_J-0.11-0.066-0.0666.796-25.4350.012
132I_DT-42:DA42_J0.1690.237-0.5547.896-9.84310.929
134I_DT-40:DA40_J-0.372-0.145-0.2829.312-8.261-1.72
136I_DT-38:DA38_J-0.132-0.088-0.012-6.401-8.0356.5
137I_DT-37:DA37_J-0.314-0.0650.791-17.292-12.8330.342
138I_DT-36:DA36_J-0.053-0.0930.851-12.136-14.0044.137
145I_DT-29:DA29_J-0.059-0.0070.1275.898-15.81115.219
148I_DT-26:DA26_J-0.335-0.0540.349-9.148-34.101-1.836
152I_DT-22:DA22_J0.5920.26-0.1244.402-14.3925.739
162I_DT-12:DA12_J-0.22-0.1360.506-16.125-12.7760.882
164I_DT-10:DA10_J-0.56-0.1660.255-13.683-13.3743.319
165I_DT-9:DA9_J-0.377-0.1120.387-8.263-11.9242.371
170I_DT-4:DA4_J-0.2640.0450.556-1.321-28.834-4.853
175I_DT1:DA-1_J0.124-0.0880.055-0.62-15.9593.128
181I_DT7:DA-7_J-0.108-0.137-0.133-9.619-14.135.014
187I_DT13:DA-13_J-0.185-0.0290.2722.854-12.1871.884
191I_DT17:DA-17_J-0.89-0.0690.132-17.191-24.638-1.747
192I_DT18:DA-18_J0.2610.17-0.073-3.262-23.873.671
193I_DT19:DA-19_J-0.092-0.016-0.7053.323-14.1327.856
194I_DT20:DA-20_J0.344-0.357-0.883-1.278-17.4032.16
197I_DT23:DA-23_J-0.4350.089-0.04611.119-12.8211.088
1105I_DT31:DA-31_J0.4790.1430.063-6.6-16.5161.295
1106I_DT32:DA-32_J-0.145-0.1140.437-6.124-10.7176.359
1107I_DT33:DA-33_J0.1450.3380.155-12.64-26.148-2.338
1113I_DT39:DA-39_J-0.5840.172-0.5113.214-20.283.566
1118I_DT44:DA-44_J-0.1520.0970.465-5.093-12.74-0.883
1119I_DT45:DA-45_J-0.041-0.1830.482-8.608-14.159-1.288
1120I_DT46:DA-46_J-0.574-0.010.646-14.693-22.856-0.928
1121I_DT47:DA-47_J-0.1310.2040.453-15.975-20.3121.162
1126I_DT53:DA-53_J0.3920.07-0.55-0.395-18.251-1.501
1128I_DT55:DA-55_J-0.2060.2230.4994.693-13.9231.55
1130I_DT57:DA-57_J-0.5120.0781.074-10.99-15.7254.06
1136I_DT63:DA-63_J-0.093-0.128-0.033-4.154-7.6520.219
1140I_DT67:DA-67_J0.485-0.128-0.2239.358-6.3763.846
1142I_DT69:DA-69_J-0.286-0.1690.406-3.419-18.143.239
1143I_DT70:DA-70_J-0.1060.0550.1651.525-14.7031.223
1146I_DT73:DA-73_J0.083-0.357-0.126.932-12.933.906

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.