A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
Search for released structures

NDB ID: 5AV5  PDB ID: 5AV5 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA-73DT-72:DA72DT73_JJ-0.648-0.7023.223.341-1.85930.996-0.9591.8263.17-3.462-6.22131.226
14II_DA-70DA-69:DT69DT70_JJ-0.770.2033.19-3.089-1.07436.9740.4590.8033.235-1.6894.85937.113
15II_DA-69DT-68:DA68DT69_JJ0.704-0.6663.0973.675-4.63229.173-0.35-0.623.224-9.079-7.20429.753
17II_DA-67DT-66:DA66DT67_JJ0.335-1.0773.271.156-3.64935.589-1.219-0.3763.37-5.949-1.88535.788
111II_DA-63DC-62:DG62DT63_JJ0.805-0.6823.179-1.6955.42132.813-2.049-1.6732.9879.5082.97333.288
117II_DA-57DG-56:DC56DT57_JJ0.6030.4073.537-0.255-1.01439.2720.736-0.933.522-1.5080.37939.285
119II_DA-55DT-54:DA54DT55_JJ0.205-0.643.297-4.11-6.86736.109-0.063-0.893.317-10.9136.53336.956
121II_DA-53DC-52:DG52DT53_JJ-0.247-0.5522.7333.3566.32525.245-2.6021.2792.4714.114-7.48826.225
124II_DA-50DC-49:DG49DT50_JJ0.495-0.1142.728-6.247-2.03131.7950.089-1.7872.588-3.65911.25332.45
127II_DA-47DA-46:DT46DT47_JJ0.3550.223.5970.098-4.26739.460.869-0.513.556-6.297-0.14539.681
128II_DA-46DA-45:DT45DT46_JJ0.896-0.3793.3142.192-3.62431.966-0.018-1.2123.387-6.545-3.95932.238
129II_DA-45DA-44:DT44DT45_JJ0.020.0423.5240.335-0.44139.1560.1190.0143.523-0.658-0.539.159
130II_DA-44DG-43:DC43DT44_JJ0.207-0.5123.507-1.0836.71129.905-2.364-0.6163.30712.7972.06530.651
135II_DA-39DT-38:DA38DT39_JJ0.582-0.5613.289-1.563-1.49234.556-0.712-1.223.281-2.5092.62834.622
141II_DA-33DA-32:DT32DT33_JJ-0.1590.1553.4552.066.11138.874-0.5370.4953.4279.105-3.06939.385
142II_DA-32DA-31:DT31DT32_JJ0.117-0.1843.473-4.61811.65429.286-2.58-1.1023.12221.8328.65231.803
143II_DA-31DC-30:DG30DT31_JJ0.236-0.4492.8526.1612.83930.464-1.3070.5862.7935.32-11.54531.193
151II_DA-23DT-22:DA22DT23_JJ0.147-0.2693.052-0.8334.53632.77-1.182-0.3882.9847.9911.46733.084
154II_DA-20DA-19:DT19DT20_JJ0.5741.0092.908-0.98820.91925.008-1.883-1.22.87140.4411.91132.511
155II_DA-19DA-18:DT18DT19_JJ-0.6970.5363.122-1.9853.10425.5740.3591.0213.2076.9664.45525.833
156II_DA-18DA-17:DT17DT18_JJ-0.6-0.0273.439-1.4347.73438.695-1.0030.7113.39111.5282.13839.457
157II_DA-17DG-16:DC16DT17_JJ1.870.8493.1482.443-9.83433.6482.804-2.7542.918-16.529-4.10635.098
161II_DA-13DT-12:DA12DT13_JJ-0.479-0.5523.362-2.2350.67335.127-1.0170.4493.3741.1143.69835.202
167II_DA-7DG-6:DC6DT7_JJ-0.8681.3933.466-5.25-8.90840.0842.9610.6483.183-12.7427.50941.343
173II_DA-1DA0:DT0DT1_JJ-0.071-0.2913.5441.9521.15335.642-0.6540.4213.5241.881-3.18635.711
174II_DA0DT1:DA-1DT0_JJ-0.115-0.9693.122.0325.68627.482-3.2260.6782.8511.789-4.21228.125
178II_DA4DG5:DC-5DT-4_JJ1.3330.6713.2782.615-3.23533.9071.658-1.8533.293-5.521-4.46234.154
183II_DA9DA10:DT-10DT-9_JJ0.4050.1683.5662.6499.95333.28-1.395-0.2313.49216.883-4.49434.794
184II_DA10DC11:DG-11DT-10_JJ0.154-0.1762.955-1.2494.40128.816-1.212-0.552.8878.7732.49129.17
186II_DA12DT13:DA-13DT-12_JJ0.1-0.523.3740.340.2530.312-1.046-0.1213.3710.478-0.65130.315
196II_DA22DT23:DA-23DT-22_JJ-0.547-0.6242.9531.808-1.23627.592-1.0351.5392.937-2.586-3.78427.677
1100II_DA26DG27:DC-27DT-26_JJ1.8010.3883.0140.415-8.53629.4462.267-3.3342.818-16.363-0.79530.635
1103II_DA29DG30:DC-30DT-29_JJ-1.280.6222.856-14.135.15538.4290.3510.3583.1717.4920.53441.164
1110II_DA36DA37:DT-37DT-36_JJ0.248-0.0043.1440.081-0.50639.1710.053-0.3613.145-0.755-0.1239.174
1111II_DA37DA38:DT-38DT-37_JJ-0.164-0.3913.3942.531-2.56934.117-0.2440.693.393-4.363-4.29934.302
1112II_DA38DT39:DA-39DT-38_JJ-0.173-0.4023.2653.225-2.43531.902-0.290.893.253-4.407-5.83932.15
1114II_DA40DC41:DG-41DT-40_JJ-0.009-0.4663.063-7.5324.20132.406-1.451-1.1372.917.36713.20633.504
1116II_DA42DC43:DG-43DT-42_JJ0.449-0.7883.336-2.3650.3335.207-1.349-1.0963.2930.5453.90535.286
1124II_DA51DG52:DC-52DT-51_JJ0.220.2493.613-1.44311.02531.545-1.61-0.6513.48919.5352.55633.4
1127II_DA54DT55:DA-55DT-54_JJ-0.506-1.1063.2082.438-8.58435.563-0.5631.1453.336-13.788-3.91536.63
1133II_DA60DG61:DC-61DT-60_JJ0.7850.4663.125-2.1285.22232.672-0.026-1.723.1049.1983.74733.142
1139II_DA66DT67:DA-67DT-66_JJ0.136-0.7243.0984.706-0.56132.782-1.180.5163.099-0.988-8.28433.114
1141II_DA68DT69:DA-69DT-68_JJ-0.053-0.6643.037-1.434-3.32628.575-0.635-0.1953.091-6.7042.8928.799
1145II_DA72DT73:DA-73DT-72_JJ0.581-1.0843.1661.9295.91731.883-2.918-0.722.95110.644-3.46932.469
13II_DC-71DA-70:DT70DG71_JJ-0.3850.473.36-6.197.34832.878-0.424-0.3763.39812.6510.65634.216
19II_DC-65DC-64:DG64DG65_JJ-0.1480.232.936.138.37129.756-0.9881.3062.80615.71-11.50631.475
110II_DC-64DA-63:DT63DG64_JJ-0.8090.4113.362-4.2075.01836.149-0.0680.683.4568.0056.71236.717
112II_DC-62DC-61:DG61DG62_JJ0.703-0.5473.3844.7229.65628.297-3.06-0.3653.10918.911-9.24830.231
113II_DC-61DT-60:DA60DG61_JJ-1.0860.6613.1691.4817.42332.758-0.0532.1173.18712.947-2.58233.598
116II_DC-58DA-57:DT57DG58_JJ0.4322.4083.441-0.935-14.79142.4554.413-0.6462.5-19.7191.24644.855
122II_DC-52DT-51:DA51DG52_JJ0.2120.2093.585-2.43810.60832.342-1.51-0.7913.45618.4064.23134.078
125II_DC-49DC-48:DG48DG49_JJ0.6310.2352.75310.8528.60725.862-1.1990.8492.73517.705-22.32429.282
126II_DC-48DA-47:DT47DG48_JJ-0.592.6283.375-3.311-7.31442.9624.2160.4842.947-9.8844.47443.67
144II_DC-30DT-29:DA29DG30_JJ1.4770.1493.4514.14211.88833.129-1.671-1.7633.45519.975-6.95935.378
147II_DC-27DT-26:DA26DG27_JJ-1.3560.5023.258-2.1470.54431.4260.8222.0933.3491.0023.95831.502
149II_DC-25DC-24:DG24DG25_JJ-1.1010.5343.221-4.058-6.71236.8711.6881.1843.177-10.4676.32837.668
150II_DC-24DA-23:DT23DG24_JJ0.2390.5823.3453.50410.10632.549-0.6930.1783.37717.453-6.05234.217
153II_DC-21DA-20:DT20DG21_JJ-0.1520.5143.7592.93418.3121.45-4.1021.1373.17740.739-6.52828.284
160II_DC-14DA-13:DT13DG14_JJ-0.9930.8973.497-8.7282.64337.2010.9990.2943.6814.06913.43538.264
166II_DC-8DA-7:DT7DG8_JJ0.3120.8223.3890.5659.15637.5490.037-0.3973.49113.97-0.86138.614
169II_DC-5DT-4:DA4DG5_JJ-0.9320.6633.3710.054-6.59535.1972.0391.5243.198-10.789-0.08835.791
176II_DC2DC3:DG-3DG-2_JJ0.0160.1413.0872.6767.61131.453-1.0180.4183.02913.758-4.83732.446
177II_DC3DA4:DT-4DG-3_JJ-0.8741.7723.53-2.029-4.71843.6712.8390.9643.366-6.3162.71643.957
180II_DC6DT7:DA-7DG-6_JJ1.4121.473.6357.413-6.61843.0642.648-1.1033.567-8.875-9.94144.143
185II_DC11DA12:DT-12DG-11_JJ-0.4830.5663.591-3.65211.2335.803-0.7760.2113.63117.6835.75137.639
189II_DC15DC16:DG-16DG-15_JJ0.3091.6723.8414.1-11.00242.8683.3570.0163.35-14.726-5.48844.373
190II_DC16DT17:DA-17DG-16_JJ-0.4071.4313.3432.21-8.02537.3413.1690.8932.956-12.346-3.40138.225
1102II_DC28DA29:DT-29DG-28_JJ1.4520.7973.8257.4839.20535.376-0.276-1.0354.11214.648-11.90937.252
1108II_DC34DC35:DG-35DG-34_JJ-1.3871.1642.8322.121-1.94531.2782.4572.8982.66-3.598-3.92331.407
1109II_DC35DA36:DT-36DG-35_JJ0.3632.083.4910.945-18.10141.0074.305-0.3962.418-24.451-1.27744.675
1115II_DC41DA42:DT-42DG-41_JJ-0.732-0.0633.282.1095.10335.401-0.8331.4933.1938.33-3.44335.816
1117II_DC43DT44:DA-44DG-43_JJ0.066-0.8893.3812.0450.06931.902-1.6280.2643.3770.125-3.71631.966
1129II_DC56DT57:DA-57DG-56_JJ-0.9580.1583.3670.2333.62934.396-0.3121.6483.3596.115-0.39334.582
1132II_DC59DA60:DT-60DG-59_JJ-0.7371.893.49-1.194-4.31841.9043.0930.8973.307-6.0161.66442.132
115II_DG-59DC-58:DG58DC59_JJ-0.0180.2452.7910.6827.9332.827-0.6870.1272.77213.78-1.18633.753
118II_DG-56DA-55:DT55DC56_JJ-0.083-0.293.1942.703-1.00231.439-0.3520.6423.184-1.844-4.97631.568
131II_DG-43DT-42:DA42DC43_JJ-0.363-0.0992.8960.7610.22436.944-0.1820.6642.8870.353-1.20136.952
133II_DG-41DT-40:DA40DC41_JJ-0.729-0.3772.796-2.997.27231.587-1.7580.8552.70113.1065.3932.527
139II_DG-35DG-34:DC34DC35_JJ1.3761.1172.921-1.009-3.83731.9162.612-2.6412.728-6.9451.82532.155
140II_DG-34DA-33:DT33DC34_JJ-1.0210.6473.3930.3464.28237.1230.421.6423.4346.698-0.54137.362
146II_DG-28DC-27:DG27DC28_JJ0.8911.2493.6013.027-3.23745.2691.929-0.863.558-4.194-3.92145.474
158II_DG-16DG-15:DC15DC16_JJ-0.7461.6514.203-2.331-8.71942.5673.2790.7273.842-11.8513.16943.47
159II_DG-15DC-14:DG14DC15_JJ1.2560.7443.7988.426-8.42336.4062.388-0.6663.73-13.059-13.06438.243
163II_DG-11DT-10:DA10DC11_JJ-0.209-0.293.099-4.5164.7929.851-1.45-0.4513.0159.1588.63530.552
168II_DG-6DC-5:DG5DC6_JJ1.2460.833.5042.11-7.09937.3272.23-1.6283.359-10.96-3.25738.029
171II_DG-3DG-2:DC2DC3_JJ0.2170.5183.052-2.1636.54631.694-0.163-0.7493.07411.8123.90332.416
172II_DG-2DA-1:DT1DC2_JJ-0.907-0.1983.38-4.6396.03835.609-1.1970.7763.399.7367.4836.388
179II_DG5DC6:DG-6DC-5_JJ-1.3591.183.514-4.629-8.38138.2312.8081.4353.329-12.5586.93539.368
182II_DG8DA9:DT-9DC-8_JJ-0.80.1153.270.0016.73933.38-0.8821.3663.23111.585-0.00234.035
188II_DG14DC15:DG-15DC-14_JJ-1.2330.5963.911-3.55-14.80938.8942.6911.2893.559-21.2745.09941.661
195II_DG21DA22:DT-22DC-21_JJ-0.638-0.4143.411-1.5913.47536.074-1.1720.7933.3825.5922.56136.269
198II_DG24DG25:DC-25DC-24_JJ0.9280.6053.3271.911-0.39937.8810.983-1.1783.362-0.613-2.94137.929
199II_DG25DA26:DT-26DC-25_JJ-1.4541.0783.588-5.753-6.95942.9862.171.3443.537-9.3737.74843.88
1101II_DG27DC28:DG-28DC-27_JJ-0.9290.6533.6164.177-2.42641.1991.2031.7963.467-3.434-5.91141.469
1104II_DG30DT31:DA-31DC-30_JJ-0.795-0.5163.3051.819.10229.057-2.7641.8672.95817.584-3.49830.472
1122II_DG48DG49:DC-49DC-48_JJ-0.468-0.183.078-2.3987.90329.746-1.7860.4422.96215.0334.56130.846
1123II_DG49DA51:DT-51DC-49_JJ-0.747-1.3786.6182.17514.69166.017-2.3650.8396.20313.309-1.9767.482
1125II_DG52DT53:DA-53DC-52_JJ0.066-1.2923.0981.4676.028.593-3.740.1572.77411.972-2.92729.239
1131II_DG58DC59:DG-59DC-58_JJ0.4150.4482.908-3.2953.93129.880.151-1.3862.8817.5536.33130.307
1134II_DG61DG62:DC-62DC-61_JJ-0.685-0.3563.6110.57615.61433.599-2.8461.1653.13625.377-0.93636.959
1135II_DG62DT63:DA-63DC-62_JJ-0.552-0.713.192-3.854.27630.21-2.1530.3083.1098.1127.30430.74
1137II_DG64DG65:DC-65DC-64_JJ0.860.393.2360.8018.82134.547-0.655-1.2883.25314.559-1.32235.631
1138II_DG65DA66:DT-66DC-65_JJ-0.675-0.1473.197-8.265-1.99935.170.045-0.0813.27-3.24913.43736.152
1144II_DG71DA72:DT-72DC-71_JJ-0.5960.073.402-6.195-3.60639.7290.530.1283.434-5.2549.02640.345
12II_DT-72DC-71:DG71DA72_JJ1.1320.3023.2012.9376.49937.429-0.361-1.3623.28310.016-4.52638.079
16II_DT-68DA-67:DT67DA68_JJ-0.392-0.1863.735-0.587-3.30943.7130.1110.4613.743-4.4360.78743.836
18II_DT-66DC-65:DG65DA66_JJ1.025-0.343.402-0.727-4.84835.0650.186-1.7983.396-7.9981.19935.396
114II_DT-60DG-59:DC59DA60_JJ0.3341.4273.631.38-3.92141.5452.453-0.3113.496-5.511-1.9441.743
120II_DT-54DA-53:DT53DA54_JJ-0.221-1.1243.395.8589.3332.723-3.3261.2712.88916.004-10.04934.479
123II_DT-51DA-50:DT50DA51_JJ-0.142-0.4073.9752.85821.16633.863-3.5110.6013.17632.627-4.40639.869
132II_DT-42DG-41:DC41DA42_JJ0.2020.2313.666-0.69213.98427.894-2.615-0.5273.38826.9641.33431.148
134II_DT-40DA-39:DT39DA40_JJ0.119-0.4053.9450.8116.43334.011-1.866-0.053.80910.876-1.37134.606
136II_DT-38DT-37:DA37DA38_JJ0.084-0.2693.55-0.388-2.82138.183-0.025-0.1813.559-4.3040.59238.285
137II_DT-37DT-36:DA36DA37_JJ-0.204-0.2963.116-0.2411.96531.402-0.8950.3343.0933.6260.44431.463
138II_DT-36DG-35:DC35DA36_JJ-0.7582.5683.439-0.393-21.13145.8194.390.8672.139-25.6010.47650.219
145II_DT-29DG-28:DC28DA29_JJ-1.4170.8683.31-2.5153.75635.2950.8521.9393.476.1634.12635.574
148II_DT-26DC-25:DG25DA26_JJ1.5491.2193.444.504-3.06443.5691.94-1.6193.486-4.108-6.0443.892
152II_DT-22DC-21:DG21DA22_JJ0.2720.4213.1456.2014.92135.420.0030.4123.1757.966-10.03736.266
162II_DT-12DG-11:DC11DA12_JJ0.0630.1763.3982.2048.95135.818-0.9880.2123.34214.265-3.51236.947
164II_DT-10DT-9:DA9DA10_JJ-0.351-0.1163.25-2.4146.44432.473-1.2790.2113.18611.3654.25733.175
165II_DT-9DC-8:DG8DA9_JJ0.540.1962.9645.3634.42133.471-0.312-0.1363.0137.576-9.18934.164
170II_DT-4DG-3:DC3DA4_JJ0.9781.5893.5273.535-3.18142.3032.534-0.9643.471-4.392-4.8842.557
175II_DT1DC2:DG-2DA-1_JJ0.263-0.1823.3771.2786.95132.571-1.508-0.2413.27712.214-2.24533.309
181II_DT7DG8:DC-8DA-7_JJ-0.4781.0123.06-5.1549.68734.3920.2750.0483.25415.898.45436.049
187II_DT13DG14:DC-14DA-13_JJ1.0280.3433.288-0.4156.31335.836-0.34-1.7053.28810.1610.66936.372
191II_DT17DT18:DA-18DA-17_JJ0.1920.3022.989-1.9337.23736.58-0.41-0.5362.97911.3833.04137.313
192II_DT18DT19:DA-19DA-18_JJ0.5470.3033.1753.5717.58430.041-0.872-0.3433.19714.286-6.72631.163
193II_DT19DT20:DA-20DA-19_JJ-0.1320.3973.4352.24815.55828.894-2.1960.6533.2128.659-4.14132.813
194II_DT20DG21:DC-21DA-20_JJ0.676-0.2843.295-8.80122.55519.885-4.586-2.8381.72247.66518.631.236
197II_DT23DG24:DC-24DA-23_JJ0.1450.6413.4140.5727.18436.413-0.014-0.1463.47511.36-0.90437.096
1105II_DT31DT32:DA-32DA-31_JJ0.025-0.3663.352-0.5762.59527.898-1.381-0.193.3045.3681.19228.022
1106II_DT32DT33:DA-33DA-32_JJ-0.301-0.1363.3783.8487.16639.293-1.0380.8893.26210.519-5.64840.094
1107II_DT33DC34:DG-34DA-33_JJ1.5430.623.5490.052.10938.3450.655-2.343.5793.208-0.07538.401
1113II_DT39DA40:DT-40DA-39_JJ-0.039-0.2613.964-5.01715.19935.211-2.656-0.6873.53523.6747.81538.573
1118II_DT44DT45:DA-45DA-44_JJ0.173-0.2473.3493.222-4.62236.6590.2490.1723.357-7.296-5.08637.075
1119II_DT45DT46:DA-46DA-45_JJ-0.22-0.3693.411.223-7.2935.4820.4860.5343.407-11.804-1.9836.22
1120II_DT46DT47:DA-47DA-46_JJ-0.1350.0593.2733.068-3.68636.2490.6020.6373.23-5.893-4.90536.555
1121II_DT47DG48:DC-48DA-47_JJ0.7132.0643.19-0.685-11.77439.3024.091-1.0852.485-17.0450.99240.966
1126II_DT53DA54:DT-54DA-53_JJ0.871-0.1883.193-6.837.21929.518-1.652-2.8542.80413.68812.9531.111
1128II_DT55DC56:DG-56DA-55_JJ1.158-0.7253.4090.606-3.52233.206-0.646-1.913.485-6.141-1.05633.392
1130II_DT57DG58:DC-58DA-57_JJ-0.5382.7273.4411.216-12.58247.914.1480.7282.674-15.188-1.46849.454
1136II_DT63DG64:DC-64DA-63_JJ0.1150.0543.3782.8797.65531.503-1.2920.3163.29713.81-5.19332.522
1140II_DT67DA68:DT-68DA-67_JJ-0.6610.263.965-3.393-5.75342.9441.0290.4943.938-7.8014.60143.436
1142II_DT69DT70:DA-70DA-69_JJ0.364-0.2113.081.8310.48836.695-0.398-0.3423.0910.774-2.90636.742
1143II_DT70DG71:DC-71DA-70_JJ1.0910.2923.345.1716.74929.921-0.826-0.9853.45812.751-9.7731.079

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.