A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 5AV8  PDB ID: 5AV8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA-73:DT73_J-0.2-0.0820.378-11.371-12.8582.319
14I_DA-70:DT70_J-0.0150.020.1065.8-14.8646.671
15I_DA-69:DT69_J0.199-0.0980.4347.268-14.5363.543
17I_DA-67:DT67_J0.496-0.1070.4092.757-16.866-3.186
111I_DA-63:DT63_J0.423-0.3120.2172.786-8.385-4.896
117I_DA-57:DT57_J0.199-0.3040.73411.846-22.097-1.079
119I_DA-55:DT55_J0.0820.1880.2850.787-16.356-3.24
121I_DA-53:DT53_J-0.0440.021-0.109-2.738-10.994-5.437
124I_DA-50:DT50_J-0.6630.057-0.527-15.966-24.4663.194
127I_DA-47:DT47_J0.033-0.0480.32820.314-22.857-0.912
128I_DA-46:DT46_J0.735-0.040.60319.998-30.266-2.491
129I_DA-45:DT45_J0.19-0.0970.0827.832-30.3235.745
130I_DA-44:DT44_J0.311-0.0760.3210.645-11.4482.284
135I_DA-39:DT39_J-0.118-0.026-0.205-6.894-15.6320.14
141I_DA-33:DT33_J-0.9970.10.48411.741-17.9217.084
142I_DA-32:DT32_J0.231-0.120.0033.757-25.8124.88
143I_DA-31:DT31_J0.1540.2190.5410.884-12.726-0.091
151I_DA-23:DT23_J-0.1690.026-0.295-6.525-15.145.98
154I_DA-20:DT20_J-0.4280.2-0.468-7.718-13.7924.028
155I_DA-19:DT19_J0.1270.014-0.3685.605-15.24117.942
156I_DA-18:DT18_J-0.340.0120.074.073-23.978.931
157I_DA-17:DT17_J0.353-0.0120.5754.073-33.0210.674
161I_DA-13:DT13_J-0.4450.063-0.151-16.228-7.1613.848
167I_DA-7:DT7_J0.031-0.2990.07.773-11.5661.339
173I_DA-1:DT1_J-0.039-0.1270.2620.884-10.3030.517
174I_DA0:DT0_J0.998-0.2630.089-0.617-14.5392.593
178I_DA4:DT-4_J0.6610.0130.4933.95-26.789-3.18
183I_DA9:DT-9_J-0.012-0.0630.0164.635-16.0712.449
184I_DA10:DT-10_J-0.022-0.048-0.3580.414-13.9715.153
186I_DA12:DT-12_J0.2180.0350.2651.472-15.7064.948
196I_DA22:DT-22_J0.035-0.138-0.52-10.378-9.4351.813
1100I_DA26:DT-26_J0.409-0.1510.4431.745-27.52-4.306
1103I_DA29:DT-29_J-0.409-0.029-0.313-14.165-15.17812.571
1110I_DA36:DT-36_J-0.568-0.1510.5871.44-11.577-0.334
1111I_DA37:DT-37_J-0.015-0.240.6614.792-10.2431.276
1112I_DA38:DT-38_J0.315-0.1310.6773.925-18.874.626
1114I_DA40:DT-40_J-0.027-0.354-0.0851.062-11.9910.527
1116I_DA42:DT-42_J-0.822-0.333-0.593-4.053-23.883.073
1125I_DA51:DT-51_J0.33-0.323-0.559-4.154-17.665-4.888
1128I_DA54:DT-54_J-0.038-0.2150.488-3.333-4.1286.935
1134I_DA60:DT-60_J-0.252-0.0810.018-3.936-24.4284.277
1140I_DA66:DT-66_J0.043-0.0470.172-3.392-12.2111.561
1142I_DA68:DT-68_J0.264-0.254-0.115-14.293-9.3082.109
1146I_DA72:DT-72_J0.179-0.101-0.1365.539-11.4884.444
13I_DC-71:DG71_J0.4850.118-0.719.372-6.6266.719
19I_DC-65:DG65_J-0.290.070.272-4.825-13.8688.352
110I_DC-64:DG64_J-0.023-0.001-0.2442.323-9.1921.196
112I_DC-62:DG62_J1.107-0.1620.2143.101-8.9217.935
113I_DC-61:DG61_J0.423-0.0480.682-12.769-18.27711.356
116I_DC-58:DG58_J0.304-0.001-0.31814.711-7.5910.688
122I_DC-52:DG52_J-0.031-0.122-0.25517.641-12.4592.605
125I_DC-49:DG49_J1.0850.0710.3482.276-10.4855.276
126I_DC-48:DG48_J-0.330.445-0.21112.606-9.7112.462
144I_DC-30:DG30_J-0.2050.193-0.23612.447-19.3254.091
147I_DC-27:DG27_J0.561-0.08-0.013-2.543-15.8766.036
149I_DC-25:DG25_J-0.2410.138-0.194-8.3690.76210.65
150I_DC-24:DG24_J0.4450.140.183-3.475-13.1232.368
153I_DC-21:DG21_J0.669-0.247-0.5222.923-21.7643.172
160I_DC-14:DG14_J-0.2390.179-0.21-14.736-5.8627.65
166I_DC-8:DG8_J0.1560.073-0.2485.838-15.2044.592
169I_DC-5:DG5_J0.135-0.2880.236-1.021-5.6521.167
176I_DC2:DG-2_J0.069-0.140.202-8.038-11.19-0.673
177I_DC3:DG-3_J0.164-0.113-0.0615.215-8.211.918
180I_DC6:DG-6_J-0.032-0.140.528-1.655-26.823-0.726
185I_DC11:DG-11_J-0.134-0.112-0.0765.54-16.1713.813
189I_DC15:DG-15_J0.3440.1980.8093.044-31.2181.959
190I_DC16:DG-16_J0.199-0.3380.65-8.706-9.797-2.531
1102I_DC28:DG-28_J0.37-0.0280.3064.11-24.9813.386
1108I_DC34:DG-34_J0.210.5050.375-13.3080.54412.845
1109I_DC35:DG-35_J0.1750.0620.483.502-11.732.762
1115I_DC41:DG-41_J-0.104-0.272-0.3019.408-9.0053.227
1117I_DC43:DG-43_J0.759-0.145-0.4337.508-24.2651.994
1130I_DC56:DG-56_J-0.5710.51.175-12.327-16.78112.434
1133I_DC59:DG-59_J0.4980.1650.1217.772-6.3366.593
115I_DG-59:DC59_J-0.832-0.123-0.071-12.017-4.201-0.311
118I_DG-56:DC56_J0.5960.2120.4687.306-21.377.558
131I_DG-43:DC43_J-0.9060.2210.129-2.132-12.29210.044
133I_DG-41:DC41_J-0.658-0.144-0.032-6.311-7.943.6
139I_DG-35:DC35_J-0.862-0.2330.55-11.264-18.799-1.282
140I_DG-34:DC34_J-0.6970.101-0.542-4.787-2.0024.394
146I_DG-28:DC28_J-0.2130.0270.245-1.499-25.8362.274
158I_DG-16:DC16_J-0.447-0.1340.60319.518-4.224-1.446
159I_DG-15:DC15_J0.274-0.1330.872-1.581-38.315-3.204
163I_DG-11:DC11_J-0.5470.117-0.114-18.125-10.9374.735
168I_DG-6:DC6_J-0.348-0.090.5680.798-28.2190.521
171I_DG-3:DC3_J-0.3380.1230.075-5.177-6.0995.386
172I_DG-2:DC2_J-0.118-0.0770.4789.604-7.8184.951
179I_DG5:DC-5_J0.024-0.160.2923.535-4.31-0.446
182I_DG8:DC-8_J-0.131-0.1260.19-0.33-10.2862.977
188I_DG14:DC-14_J-0.061-0.0920.2186.3890.0853.378
195I_DG21:DC-21_J0.128-0.203-0.501-2.656-14.5845.775
198I_DG24:DC-24_J-0.0870.1240.3266.159-17.1860.326
199I_DG25:DC-25_J0.4020.067-0.3340.5342.8037.112
1101I_DG27:DC-27_J-0.351-0.0720.5415.902-7.3284.796
1104I_DG30:DC-30_J-0.1430.0730.315-7.402-10.4726.875
1122I_DG48:DC-48_J-0.9890.1540.348-9.995-12.6114.872
1123I_DG49:DC-49_J-0.4720.1780.4343.164-6.763.305
1126I_DG52:DC-52_J0.264-0.541-0.545-12.225-23.0161.786
1132I_DG58:DC-58_J-0.297-0.0930.191-10.447-6.863-1.842
1135I_DG61:DC-61_J-0.1020.0540.3138.242-16.0777.95
1136I_DG62:DC-62_J-0.255-0.061-0.352-11.786-16.3040.439
1138I_DG64:DC-64_J0.115-0.2-0.058-1.231-12.851-2.003
1139I_DG65:DC-65_J0.572-0.062-0.2191.096-16.3395.033
1145I_DG71:DC-71_J-1.168-0.059-0.310.101-5.1117.609
12I_DT-72:DA72_J-0.0990.078-0.191-3.289-7.2415.782
16I_DT-68:DA68_J-0.076-0.2260.11213.292-10.1631.649
18I_DT-66:DA66_J0.380.0410.1880.62-11.9642.844
114I_DT-60:DA60_J-0.104-0.153-0.101-3.28-23.1234.756
120I_DT-54:DA54_J-0.1560.3750.2285.701-9.6755.913
123I_DT-51:DA51_J-0.251-0.0440.1579.529-20.091-3.756
132I_DT-42:DA42_J-0.1510.105-0.5814.416-14.1213.163
134I_DT-40:DA40_J-0.057-0.007-0.30111.339-8.4891.328
136I_DT-38:DA38_J-0.1790.0290.414-4.288-18.8267.302
137I_DT-37:DA37_J-0.581-0.1770.554-19.063-12.778-1.48
138I_DT-36:DA36_J-0.119-0.020.802-15.266-10.7462.717
145I_DT-29:DA29_J-0.624-0.122-0.0821.855-19.2348.005
148I_DT-26:DA26_J0.026-0.0170.345-8.56-34.973.359
152I_DT-22:DA22_J0.4940.149-0.1318.154-12.916-4.437
162I_DT-12:DA12_J0.056-0.0550.402-10.591-11.1844.674
164I_DT-10:DA10_J-0.289-0.1810.053-9.456-17.5553.862
165I_DT-9:DA9_J-0.165-0.1210.124-6.005-14.9660.518
170I_DT-4:DA4_J-0.268-0.0570.35-2.247-27.785-2.462
175I_DT1:DA-1_J-0.384-0.156-0.0131.637-13.0431.519
181I_DT7:DA-7_J0.021-0.1370.019-9.274-13.4873.218
187I_DT13:DA-13_J-0.218-0.0750.1690.295-13.8972.871
191I_DT17:DA-17_J-0.672-0.2360.137-15.567-26.057-2.527
192I_DT18:DA-18_J0.1220.096-0.147-5.558-23.8184.067
193I_DT19:DA-19_J0.001-0.151-0.556-3.543-15.3723.92
194I_DT20:DA-20_J0.345-0.227-0.333-1.384-11.5784.519
197I_DT23:DA-23_J0.122-0.0240.0285.531-10.231.215
1105I_DT31:DA-31_J0.088-0.1330.264-8.207-17.359-1.668
1106I_DT32:DA-32_J0.1810.140.232-3.531-19.6213.562
1107I_DT33:DA-33_J0.269-0.003-0.051-10.164-25.638-0.727
1113I_DT39:DA-39_J-0.3260.236-0.1439.635-9.6881.069
1118I_DT44:DA-44_J0.0620.1630.658-6.121-12.7452.149
1119I_DT45:DA-45_J-0.552-0.0550.308-7.261-24.1461.1
1120I_DT46:DA-46_J-0.9080.020.546-20.191-23.3630.697
1121I_DT47:DA-47_J-0.1170.213-0.039-16.814-21.1186.473
1124I_DT50:DA-50_J0.3970.2490.5030.902-20.16717.881
1127I_DT53:DA-53_J0.1330.149-0.157-3.568-19.0146.638
1129I_DT55:DA-55_J-0.3790.3860.2467.661-13.2533.664
1131I_DT57:DA-57_J-0.351-0.2361.013-10.423-12.3650.698
1137I_DT63:DA-63_J0.101-0.240.205-8.302-12.9144.114
1141I_DT67:DA-67_J0.296-0.175-0.25310.869-9.097-0.232
1143I_DT69:DA-69_J0.068-0.1070.387-4.955-18.9495.486
1144I_DT70:DA-70_J-0.039-0.0840.074-3.023-13.9122.631
1147I_DT73:DA-73_J0.419-0.132-0.0719.128-17.17210.55

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.