A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
Search for released structures

NDB ID: 5AV8  PDB ID: 5AV8 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA-73DT-72:DA72DT73_JJ-0.491-0.8583.0655.6267.54131.882-2.6341.7042.67513.368-9.97333.207
14II_DA-70DA-69:DT69DT70_JJ-0.5410.2263.21-3.725-1.12137.6990.490.3613.239-1.7295.74737.892
15II_DA-69DT-68:DA68DT69_JJ0.486-0.6173.1762.945-3.4929.775-0.481-0.3413.258-6.743-5.68830.116
17II_DA-67DT-66:DA66DT67_JJ0.337-0.9823.3730.809-5.38534.847-0.779-0.4293.488-8.925-1.34135.257
111II_DA-63DC-62:DG62DT63_JJ0.651-0.6363.341-1.1272.01235.016-1.36-1.2513.2793.3391.87135.089
117II_DA-57DG-56:DC56DT57_JJ0.8510.0893.4721.3684.61833.153-0.658-1.2373.4848.041-2.38233.491
119II_DA-55DT-54:DA54DT55_JJ0.664-0.8763.3550.094-8.48131.823-0.009-1.1563.469-15.135-0.16832.906
121II_DA-53DC-52:DG52DT53_JJ0.065-0.4632.8981.8637.40924.029-2.9420.3242.63617.246-4.33725.197
124II_DA-50DC-49:DG49DT50_JJ0.572-0.1132.979-6.729-0.76936.948-0.086-1.6762.837-1.20110.50937.542
127II_DA-47DA-46:DT46DT47_JJ0.4790.2883.419-0.797-6.11337.5841.247-0.8393.323-9.411.22738.068
128II_DA-46DA-45:DT45DT46_JJ0.557-0.1383.5275.667-3.52136.2670.304-0.0413.569-5.599-9.01136.855
129II_DA-45DA-44:DT44DT45_JJ0.319-0.163.344-3.885-0.1935.379-0.234-1.0983.293-0.3126.36935.585
130II_DA-44DG-43:DC43DT44_JJ0.334-0.553.2990.585.17630.144-2.063-0.5183.1689.86-1.10430.581
135II_DA-39DT-38:DA38DT39_JJ0.485-0.6123.201-5.4983.99833.124-1.671-1.6852.9936.9229.51933.795
141II_DA-33DA-32:DT32DT33_JJ-0.1790.293.4422.9986.06539.502-0.310.6243.4268.895-4.39640.055
142II_DA-32DA-31:DT31DT32_JJ-0.0630.0963.401-5.13510.15432.991-1.457-0.7133.26117.2548.72534.846
143II_DA-31DC-30:DG30DT31_JJ0.466-0.5823.0057.6993.43428.41-1.8120.5992.9386.81-15.26629.61
151II_DA-23DT-22:DA22DT23_JJ-0.321-0.5633.013-2.8583.15231.089-1.5840.1012.965.8475.331.372
154II_DA-20DA-19:DT19DT20_JJ0.4790.7713.0271.92820.6526.272-2.156-0.5072.89338.673-3.61133.359
155II_DA-19DA-18:DT18DT19_JJ-0.490.4963.143-3.5337.56128.424-0.6130.2193.20214.9947.00729.599
156II_DA-18DA-17:DT17DT18_JJ-0.4420.3763.318-0.5514.63337.569-0.0280.6093.3457.1590.85137.847
157II_DA-17DG-16:DC16DT17_JJ1.0950.9843.0813.381-12.95334.2573.17-1.3192.643-21.021-5.48736.706
161II_DA-13DT-12:DA12DT13_JJ-0.099-0.4243.224-3.6110.74435.165-0.806-0.3623.2091.2285.95635.351
167II_DA-7DG-6:DC6DT7_JJ-0.9341.5353.553-3.936-7.44941.6612.9210.8663.314-10.3465.46642.467
173II_DA-1DA0:DT0DT1_JJ-0.12-0.273.41.2264.86537.173-1.0780.3523.3347.589-1.91237.498
174II_DA0DT1:DA-1DT0_JJ-0.108-0.9373.2020.9686.43725.123-3.7660.4932.8714.49-2.1825.939
178II_DA4DG5:DC-5DT-4_JJ1.0990.473.3473.682-5.23532.0641.769-1.2963.333-9.361-6.58332.68
183II_DA9DA10:DT-10DT-9_JJ0.3040.1023.4981.38510.67432.226-1.673-0.2823.3718.593-2.41233.931
184II_DA10DC11:DG-11DT-10_JJ0.026-0.4723.163-0.3872.59231.423-1.332-0.1173.1154.7760.71331.529
186II_DA12DT13:DA-13DT-12_JJ0.1-0.4963.3970.7332.35228.656-1.543-0.0313.3484.741-1.47828.759
196II_DA22DT23:DA-23DT-22_JJ-0.432-0.5513.024-1.7443.10426.989-1.8870.5162.9646.6143.71727.219
1100II_DA26DG27:DC-27DT-26_JJ1.5490.4323.171.483-5.23931.7221.686-2.5393.128-9.497-2.68932.174
1103II_DA29DG30:DC-30DT-29_JJ-1.2660.0433.107-11.5226.02233.059-0.8280.3583.3110.1119.34335.457
1110II_DA36DA37:DT-37DT-36_JJ0.494-0.0553.079-0.03-3.91834.8320.463-0.8253.066-6.520.05135.045
1111II_DA37DA38:DT-38DT-37_JJ-0.039-0.3013.504-1.666-7.92839.4120.536-0.1483.496-11.6062.4440.203
1112II_DA38DT39:DA-39DT-38_JJ-0.255-0.8623.0565.6682.41329.796-2.0861.5282.8824.63-10.87730.412
1114II_DA40DC41:DG-41DT-40_JJ0.202-0.3663.1950.526.62830.983-1.853-0.2773.05612.231-0.95931.671
1116II_DA42DC43:DG-43DT-42_JJ0.3260.0243.012-1.1660.82840.036-0.051-0.5993.0021.2091.70240.061
1125II_DA51DG52:DC-52DT-51_JJ0.2130.2163.484-2.31715.95529.602-2.457-0.7793.16328.7044.16933.621
1128II_DA54DT55:DA-55DT-54_JJ-0.256-0.9843.165.279-9.98232.221-0.0821.283.233-17.334-9.16834.093
1134II_DA60DG61:DC-61DT-60_JJ0.5040.4183.056-5.4746.06329.71-0.319-1.9482.94511.55210.42930.788
1140II_DA66DT67:DA-67DT-66_JJ-0.01-0.7052.9513.9520.19731.649-1.3160.6672.9240.36-7.21231.889
1142II_DA68DT69:DA-69DT-68_JJ-0.206-0.5083.074-2.862-2.48531.707-0.495-0.1183.11-4.5295.21531.927
1146II_DA72DT73:DA-73DT-72_JJ0.723-0.8673.201-0.6885.08433.324-2.286-1.3533.0248.8011.19233.705
13II_DC-71DA-70:DT70DG71_JJ-0.380.4663.403-5.6798.98631.652-0.788-0.3493.4215.92310.06333.346
19II_DC-65DC-64:DG64DG65_JJ-0.2870.2283.0095.288.82628.513-1.2131.5372.85417.226-10.30630.274
110II_DC-64DA-63:DT63DG64_JJ-0.6070.2263.38-7.1797.11135.579-0.661-0.0693.41511.35811.46736.941
112II_DC-62DC-61:DG61DG62_JJ0.642-0.5753.5284.7887.62432.538-2.321-0.2723.3713.292-8.34833.728
113II_DC-61DT-60:DA60DG61_JJ-0.8170.4372.9986.5910.7627.986-1.1182.7372.72120.954-12.83330.647
116II_DC-58DA-57:DT57DG58_JJ0.4712.4483.479-2.397-12.83346.4683.972-0.7592.725-15.8992.9748.169
122II_DC-52DT-51:DA51DG52_JJ-0.151-0.2143.479-0.9847.88731.444-1.8510.0873.33214.2691.78132.408
125II_DC-49DC-48:DG48DG49_JJ0.7360.0922.92210.6928.97325.0-1.7420.8072.86218.958-22.59128.578
126II_DC-48DA-47:DT47DG48_JJ-0.4512.6493.215-0.304-7.16544.0744.0940.5692.776-9.4730.40244.625
144II_DC-30DT-29:DA29DG30_JJ0.860.0193.463.84113.03932.6-2.054-0.8063.30522.069-6.50235.249
147II_DC-27DT-26:DA26DG27_JJ-1.1260.7893.405-3.4921.60232.9951.0951.3483.5362.8096.12333.212
149II_DC-25DC-24:DG24DG25_JJ-1.2390.5043.292-5.594-2.60537.4691.1181.173.394-4.0228.63737.956
150II_DC-24DA-23:DT23DG24_JJ0.1560.6643.3434.3618.25135.929-0.1150.3673.40313.106-6.92637.083
153II_DC-21DA-20:DT20DG21_JJ0.3250.5573.5152.56715.32522.51-3.1650.043.24634.475-5.77427.296
160II_DC-14DA-13:DT13DG14_JJ-0.9180.7753.571-6.6263.29135.010.7260.4163.7325.39610.86435.759
166II_DC-8DA-7:DT7DG8_JJ0.5660.8343.2520.5219.41835.32-0.009-0.833.36515.191-0.84136.519
169II_DC-5DT-4:DA4DG5_JJ-0.8780.6243.357-0.521-3.75233.5481.6941.4263.283-6.4750.933.755
176II_DC2DC3:DG-3DG-2_JJ0.0420.1153.0334.588.52130.413-1.240.7022.93315.749-8.46531.88
177II_DC3DA4:DT-4DG-3_JJ-0.7681.7573.514-5.446-5.51944.782.7920.4863.353-7.1817.08545.412
180II_DC6DT7:DA-7DG-6_JJ1.1961.4263.5576.413-7.28343.532.604-0.943.421-9.677-8.52144.547
185II_DC11DA12:DT-12DG-11_JJ-0.2690.543.457-1.08112.04236.027-0.8430.2643.46218.8281.6937.938
189II_DC15DC16:DG-16DG-15_JJ0.4391.5783.8361.791-8.37842.0423.102-0.3993.489-11.534-2.46642.868
190II_DC16DT17:DA-17DG-16_JJ-0.521.3433.4481.072-7.02437.9512.9140.9223.144-10.686-1.63238.586
1102II_DC28DA29:DT-29DG-28_JJ1.2830.7833.6587.1655.40936.9660.395-0.93.9038.381-11.138.003
1108II_DC34DC35:DG-35DG-34_JJ-1.3711.0173.0431.210.96629.3131.8142.9483.0171.906-2.38929.353
1109II_DC35DA36:DT-36DG-35_JJ0.0622.4313.4860.088-16.11645.9074.142-0.072.545-19.952-0.10948.509
1115II_DC41DA42:DT-42DG-41_JJ-0.380.0573.7062.6511.49728.114-2.4981.3253.41722.457-5.17630.443
1117II_DC43DT44:DA-44DG-43_JJ0.275-0.663.695-4.2055.82333.208-2.164-1.2173.47310.0437.25233.954
1130II_DC56DT57:DA-57DG-56_JJ-1.1310.2433.249-0.1951.25733.4040.2161.9343.2622.1850.33933.427
1133II_DC59DA60:DT-60DG-59_JJ-0.5821.7293.6020.154-0.85142.2442.4950.8243.566-1.18-0.21342.253
115II_DG-59DC-58:DG58DC59_JJ-0.040.3752.5813.7533.57230.1820.1480.6662.5846.796-7.1430.613
118II_DG-56DA-55:DT55DC56_JJ-0.283-0.1893.207-2.245-4.5640.1950.230.1613.219-6.6033.25140.502
131II_DG-43DT-42:DA42DC43_JJ-0.883-0.2253.2423.4480.17635.645-0.391.9213.1450.287-5.61635.807
133II_DG-41DT-40:DA40DC41_JJ-0.238-0.4232.9391.8470.37132.15-0.8220.7252.9160.67-3.33132.203
139II_DG-35DG-34:DC34DC35_JJ1.1971.1693.3635.9812.82731.5121.565-1.0083.6125.134-10.86332.182
140II_DG-34DA-33:DT33DC34_JJ-0.8420.8732.85-10.671.88134.6331.161-0.023.0123.06817.40436.238
146II_DG-28DC-27:DG27DC28_JJ0.9411.2863.4097.452-3.81344.5582.026-0.5273.4-4.976-9.72645.298
158II_DG-16DG-15:DC15DC16_JJ-0.351.1754.1650.675-5.22143.42.2040.5513.999-7.03-0.90943.703
159II_DG-15DC-14:DG14DC15_JJ1.3930.7253.7088.127-6.14635.6032.106-0.9223.753-9.807-12.96736.987
163II_DG-11DT-10:DA10DC11_JJ-0.333-0.2583.092-1.8915.89430.296-1.560.283.00411.1313.57230.907
168II_DG-6DC-5:DG5DC6_JJ1.0531.0893.482.143-6.52340.6172.288-1.2553.322-9.317-3.06141.169
171II_DG-3DG-2:DC2DC3_JJ0.2080.4472.957-3.6426.65729.252-0.38-1.0782.93812.9097.06230.199
172II_DG-2DA-1:DT1DC2_JJ-0.635-0.2593.485-2.1584.59235.017-1.1480.7063.4567.5813.56435.371
179II_DG5DC6:DG-6DC-5_JJ-1.0971.1153.565-3.445-6.48639.1842.4451.183.425-9.5695.08239.84
182II_DG8DA9:DT-9DC-8_JJ-0.5030.1133.2540.1984.58532.953-0.5650.9113.2378.033-0.34733.263
188II_DG14DC15:DG-15DC-14_JJ-1.2840.8153.668-3.784-12.84640.4692.561.3473.37-17.9855.29742.539
195II_DG21DA22:DT-22DC-21_JJ-0.226-0.1463.367-1.2638.78532.649-1.7090.183.22715.2782.19733.803
198II_DG24DG25:DC-25DC-24_JJ1.0670.5673.4735.7174.46537.7350.252-0.8413.6326.827-8.7438.401
199II_DG25DA26:DT-26DC-25_JJ-1.8211.1493.387-8.32-8.63440.7182.521.6233.379-12.09511.65542.375
1101II_DG27DC28:DG-28DC-27_JJ-0.8320.6373.47-1.389-3.94940.4861.3781.0353.421-5.6882.00140.693
1104II_DG30DT31:DA-31DC-30_JJ-0.807-0.5293.330.188.04931.673-2.3341.4673.10114.456-0.32432.655
1122II_DG48DG49:DC-49DC-48_JJ-0.3630.023.024-6.7943.88833.159-0.546-0.3943.026.69711.70234.045
1123II_DG49DT50:DA-50DC-49_JJ1.199-0.3713.3723.383-0.63935.503-0.508-1.4443.474-1.045-5.53235.665
1126II_DG52DT53:DA-53DC-52_JJ0.128-0.9093.02-2.5544.50729.209-2.632-0.7342.838.8485.01529.655
1132II_DG58DC59:DG-59DC-58_JJ0.5020.4032.944-1.9495.3830.538-0.183-1.2782.93410.1033.66131.057
1135II_DG61DG62:DC-62DC-61_JJ-0.563-0.3443.62-0.79414.68233.964-2.7110.7713.21823.7981.28636.923
1136II_DG62DT63:DA-63DC-62_JJ-0.406-0.6643.233-5.190.78131.94-1.328-0.1843.2411.4079.35232.357
1138II_DG64DG65:DC-65DC-64_JJ0.6320.2713.3251.788.38934.488-0.822-0.7683.32613.885-2.94735.507
1139II_DG65DA66:DT-66DC-65_JJ-0.614-0.113.252-6.482-1.10535.343-0.0180.0593.311-1.80210.56335.93
1145II_DG71DA72:DT-72DC-71_JJ-0.70.1013.293-4.711-0.21341.6090.1630.4783.349-0.2986.60641.864
12II_DT-72DC-71:DG71DA72_JJ0.7340.2763.0385.8492.12235.5540.16-0.3993.1263.442-9.48936.077
16II_DT-68DA-67:DT67DA68_JJ-0.169-0.2683.547-0.999-2.44743.274-0.1040.1233.559-3.3141.35343.351
18II_DT-66DC-65:DG65DA66_JJ0.752-0.1863.2761.453-2.75436.7740.081-0.993.307-4.356-2.29836.901
114II_DT-60DG-59:DC59DA60_JJ0.1571.3683.586-2.062-1.08141.5782.049-0.4573.539-1.5212.90241.64
120II_DT-54DA-53:DT53DA54_JJ-0.298-0.8563.3413.7659.1334.57-2.6751.0152.97914.989-6.18235.911
123II_DT-51DA-50:DT50DA51_JJ0.166-0.4733.8145.74617.59230.048-3.7770.7033.06730.56-9.98135.178
132II_DT-42DG-41:DC41DA42_JJ0.523-0.0653.486-4.19914.34730.43-2.559-1.6153.05525.4917.46133.826
134II_DT-40DA-39:DT39DA40_JJ0.046-0.4413.8532.30711.13934.808-2.4850.2953.54618.033-3.73436.565
136II_DT-38DT-37:DA37DA38_JJ-0.397-0.3943.6440.031-7.91336.7160.5540.6223.648-12.386-0.04837.53
137II_DT-37DT-36:DA36DA37_JJ-0.117-0.3543.24-1.6540.54332.926-0.715-0.0733.2360.9572.91532.971
138II_DT-36DG-35:DC35DA36_JJ-0.9092.4373.379-1.048-21.33446.064.2020.9992.142-25.7051.26250.526
145II_DT-29DG-28:DC28DA29_JJ-1.0320.8333.321-4.4224.43637.0940.6870.9983.496.9126.89137.601
148II_DT-26DC-25:DG25DA26_JJ1.6171.2633.3024.376-3.27838.9592.273-1.8733.344-4.886-6.52139.326
152II_DT-22DC-21:DG21DA22_JJ0.324-0.0723.435.8995.59533.644-1.0320.4163.3829.494-10.01134.584
162II_DT-12DG-11:DC11DA12_JJ0.2330.2333.4031.8119.44935.54-0.986-0.113.36115.14-2.90236.779
164II_DT-10DT-9:DA9DA10_JJ-0.385-0.0153.305-1.4756.81733.179-1.1370.423.25111.7762.54833.884
165II_DT-9DC-8:DG8DA9_JJ0.5280.1733.0034.5136.08632.23-0.656-0.2153.02810.779-7.99233.085
170II_DT-4DG-3:DC3DA4_JJ0.8591.693.5062.913-3.78942.9342.689-0.8653.4-5.157-3.96443.187
175II_DT1DC2:DG-2DA-1_JJ0.03-0.3073.4720.5125.54635.879-1.3110.0273.3888.936-0.82536.295
181II_DT7DG8:DC-8DA-7_JJ-0.5320.9123.109-5.0229.44534.7620.1450.1523.28115.3648.16936.322
187II_DT13DG14:DC-14DA-13_JJ0.9140.6043.2591.2524.64735.6960.308-1.2983.3387.539-2.03136.008
191II_DT17DT18:DA-18DA-17_JJ0.2250.2153.08-1.2375.74135.279-0.434-0.5353.0669.3922.02335.749
192II_DT18DT19:DA-19DA-18_JJ0.3910.3613.2551.7329.92731.517-1.073-0.393.23417.717-3.09233.049
193II_DT19DT20:DA-20DA-19_JJ0.1530.2773.413-2.42311.30728.563-1.824-0.7913.26121.8224.67630.77
194II_DT20DG21:DC-21DA-20_JJ0.503-0.2543.4353.12618.6925.056-4.146-0.3172.66137.06-6.19831.323
197II_DT23DG24:DC-24DA-23_JJ0.1050.6613.32-1.0993.03736.6850.625-0.3183.3584.8131.74136.822
1105II_DT31DT32:DA-32DA-31_JJ0.156-0.2933.1663.215.46631.438-1.4790.2743.0749.962-5.85132.055
1106II_DT32DT33:DA-33DA-32_JJ-0.165-0.1283.4461.5724.99737.393-0.8760.4693.3927.747-2.43837.745
1107II_DT33DC34:DG-34DA-33_JJ1.7280.833.4572.0362.6436.8830.925-2.4253.5934.163-3.2137.028
1113II_DT39DA40:DT-40DA-39_JJ-0.042-0.3813.512-1.2458.20636.552-1.738-0.1083.35112.881.95437.451
1118II_DT44DT45:DA-45DA-44_JJ-0.071-0.2423.1855.515-4.47533.1450.2890.9893.138-7.734-9.53133.876
1119II_DT45DT46:DA-46DA-45_JJ-0.196-0.3173.536-1.517-1.68934.489-0.250.0763.553-2.8462.55534.562
1120II_DT46DT47:DA-47DA-46_JJ-0.1250.5883.2645.517-5.141.0281.3560.7493.13-7.204-7.79241.681
1121II_DT47DG48:DC-48DA-47_JJ0.0412.1663.185-5.832-5.35537.0313.979-0.7592.817-8.3159.05637.839
1124II_DT50DA51:DT-51DA-50_JJ-1.302-0.1383.3726.53315.96529.133-2.7913.2862.6128.777-11.77633.762
1127II_DT53DA54:DT-54DA-53_JJ0.289-0.2343.205-8.0716.29432.288-1.381-1.7532.95410.97814.07833.83
1129II_DT55DC56:DG-56DA-55_JJ0.903-0.5353.605-1.4420.05936.331-0.867-1.6673.5660.0952.31136.358
1131II_DT57DG58:DC-58DA-57_JJ-0.6552.3173.3621.188-13.85146.8673.7920.8772.603-16.981-1.45648.774
1137II_DT63DG64:DC-64DA-63_JJ-0.0160.1493.264.0019.52431.39-1.3620.713.14517.035-7.15633.005
1141II_DT67DA68:DT-68DA-67_JJ-0.2610.1693.979-3.34-3.4942.8170.648-0.0453.963-4.7634.55843.076
1143II_DT69DT70:DA-70DA-69_JJ0.412-0.0093.1422.9330.30335.611-0.056-0.2633.1640.495-4.78635.729
1144II_DT70DG71:DC-71DA-70_JJ0.8340.3123.2533.1947.27226.147-1.191-0.9523.29415.62-6.86227.307

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.