A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
Search for released structures

NDB ID: 5AVB  PDB ID: 5AVB 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA-73:DT73_J-0.559-0.352-0.079-5.3524.441-2.672
14I_DA-70:DT70_J0.3640.1180.2828.378-15.7097.497
15I_DA-69:DT69_J0.186-0.1130.2117.116-18.321.622
17I_DA-67:DT67_J0.566-0.2290.4252.201-15.729-3.611
111I_DA-63:DT63_J0.512-0.2590.3314.546-3.957-10.35
117I_DA-57:DT57_J-0.072-0.1940.84210.382-21.5492.75
119I_DA-55:DT55_J-0.6320.1070.1170.009-13.6971.665
121I_DA-53:DT53_J-0.4-0.105-0.061-7.066-11.886-4.386
124I_DA-50:DT50_J0.3190.2-0.491-14.988-24.9880.016
127I_DA-47:DT47_J0.224-0.2380.65923.103-24.098-4.376
128I_DA-46:DT46_J0.911-0.0570.48615.054-31.164-4.115
129I_DA-45:DT45_J-0.163-0.1370.4728.707-23.7963.645
130I_DA-44:DT44_J0.2950.049-0.0550.889-16.336.114
135I_DA-39:DT39_J-0.013-0.1380.042-9.597-17.437-1.201
141I_DA-33:DT33_J-0.6740.090.51514.43-22.5665.921
142I_DA-32:DT32_J0.698-0.1430.4779.403-21.8413.226
143I_DA-31:DT31_J-0.0830.260.4443.225-15.9891.697
151I_DA-23:DT23_J-0.242-0.265-0.164-8.846-16.953.941
154I_DA-20:DT20_J-0.3050.324-0.336-12.459-13.5367.467
155I_DA-19:DT19_J0.2320.17-0.1340.183-5.66316.352
156I_DA-18:DT18_J-0.811-0.120.3868.556-24.681.679
157I_DA-17:DT17_J-0.554-0.1330.58-1.753-33.9940.855
161I_DA-13:DT13_J-0.5110.1290.065-14.479-11.2284.229
167I_DA-7:DT7_J0.505-0.2220.05.277-11.5020.067
173I_DA-1:DT1_J0.249-0.0890.2831.527-10.266-0.798
174I_DA0:DT0_J0.939-0.270.133-2.807-11.3912.062
178I_DA4:DT-4_J0.6520.0310.4723.716-27.684-6.73
183I_DA9:DT-9_J0.042-0.146-0.0532.318-17.896-0.144
184I_DA10:DT-10_J0.417-0.085-0.642-3.662-15.7563.807
186I_DA12:DT-12_J0.230.0490.283.263-16.1673.916
196I_DA22:DT-22_J-0.108-0.166-0.091-6.465-3.180.503
1100I_DA26:DT-26_J1.017-0.0610.5495.415-32.713-0.71
1103I_DA29:DT-29_J-0.434-0.021-0.561-18.455-20.35615.349
1110I_DA36:DT-36_J-0.626-0.5020.7639.917-11.557-3.369
1111I_DA37:DT-37_J0.328-0.1490.44815.03-11.91-0.733
1112I_DA38:DT-38_J0.195-0.156-0.3346.827-12.4442.211
1114I_DA40:DT-40_J-0.531-0.265-0.197-11.659-10.4662.645
1116I_DA42:DT-42_J0.076-0.383-0.0372.866-14.751-4.054
1125I_DA51:DT-51_J-0.353-0.186-0.121-0.136-13.887-2.298
1128I_DA54:DT-54_J-0.329-0.2410.9161.948-5.4154.007
1134I_DA60:DT-60_J-0.444-0.0710.451.428-20.3243.276
1140I_DA66:DT-66_J-0.248-0.10.235-3.437-7.8953.015
1142I_DA68:DT-68_J0.446-0.3760.143-11.194-6.76-2.294
1146I_DA72:DT-72_J-0.032-0.10.4122.772-14.4223.733
13I_DC-71:DG71_J0.564-0.151-0.61610.202-6.2495.872
19I_DC-65:DG65_J-0.7670.2170.435-5.524-12.7659.685
110I_DC-64:DG64_J0.3070.032-0.0662.533-8.4022.563
112I_DC-62:DG62_J0.506-0.1770.2629.008-9.7686.17
113I_DC-61:DG61_J-0.4680.1940.181-5.335-14.44312.076
116I_DC-58:DG58_J0.614-0.0980.128.32-5.0392.688
122I_DC-52:DG52_J-0.246-0.205-0.4517.713-11.5252.748
125I_DC-49:DG49_J0.7960.1790.2194.998-14.4459.775
126I_DC-48:DG48_J-0.0350.459-0.12615.518-12.26714.054
144I_DC-30:DG30_J-0.5940.201-0.38213.491-16.8063.684
147I_DC-27:DG27_J-0.0180.090.219-6.351-13.6416.79
149I_DC-25:DG25_J0.1620.051-0.338-12.0480.4298.97
150I_DC-24:DG24_J0.7550.0410.067-5.025-13.7461.536
153I_DC-21:DG21_J0.597-0.256-0.5795.33-26.00911.518
160I_DC-14:DG14_J-0.4460.071-0.238-14.29-6.20711.012
166I_DC-8:DG8_J0.0170.126-0.1324.702-13.5086.103
169I_DC-5:DG5_J-0.177-0.2810.218-0.184-3.4563.389
176I_DC2:DG-2_J-0.224-0.0210.449-11.578-9.5632.498
177I_DC3:DG-3_J0.225-0.0890.1584.365-6.822.618
180I_DC6:DG-6_J-0.202-0.230.518-0.206-30.935-1.205
185I_DC11:DG-11_J-0.3420.024-0.0564.562-17.4838.366
189I_DC15:DG-15_J0.2470.0151.237-3.987-29.0672.785
190I_DC16:DG-16_J0.166-0.1670.55-12.749-11.31-1.188
1102I_DC28:DG-28_J0.122-0.0690.5183.263-24.769-0.209
1108I_DC34:DG-34_J0.3720.3370.29-7.852-3.95112.829
1109I_DC35:DG-35_J0.327-0.0260.4413.125-14.971-1.512
1115I_DC41:DG-41_J-0.197-0.221-0.2212.212-3.9454.087
1117I_DC43:DG-43_J0.742-0.0140.0160.537-13.8553.127
1130I_DC56:DG-56_J-0.9750.5061.561-13.986-18.49413.248
1133I_DC59:DG-59_J0.6630.4090.2876.63-9.88211.241
115I_DG-59:DC59_J-0.721-0.1660.12-13.483-6.137-2.007
118I_DG-56:DC56_J1.3920.2940.5849.777-18.276.043
131I_DG-43:DC43_J-0.6410.280.082-8.646-10.7268.518
133I_DG-41:DC41_J-0.802-0.287-0.459-9.415-4.6675.237
139I_DG-35:DC35_J-0.995-0.1980.493-9.61-20.6462.435
140I_DG-34:DC34_J-0.7350.0050.35611.7849.2035.745
146I_DG-28:DC28_J-0.166-0.1160.2413.208-28.1530.632
158I_DG-16:DC16_J-0.849-0.2580.56110.1850.0458.271
159I_DG-15:DC15_J-0.23-0.221.253-3.26-33.622-0.306
163I_DG-11:DC11_J-0.3570.1-0.189-18.102-10.6614.704
168I_DG-6:DC6_J-0.074-0.1070.593-0.941-26.672-0.659
171I_DG-3:DC3_J-0.5630.1330.327-4.383-8.3418.118
172I_DG-2:DC2_J-0.0990.1480.4298.559-6.3367.136
179I_DG5:DC-5_J0.004-0.1830.3687.179-4.6132.23
182I_DG8:DC-8_J-0.137-0.0460.2650.719-9.268.805
188I_DG14:DC-14_J-0.053-0.240.2949.7140.5882.74
195I_DG21:DC-21_J-0.466-0.0240.2352.822-14.8312.647
198I_DG24:DC-24_J0.0790.1680.46212.734-17.4783.335
199I_DG25:DC-25_J0.143-0.0310.01610.0230.3766.962
1101I_DG27:DC-27_J-0.3290.0250.7989.951-0.8796.133
1104I_DG30:DC-30_J0.4560.3630.119-5.429-8.11110.918
1122I_DG48:DC-48_J-0.1720.3730.352-7.219-6.5118.778
1123I_DG49:DC-49_J-0.5690.4190.3091.966-9.188.408
1126I_DG52:DC-52_J0.468-0.406-0.293-6.813-16.048-3.028
1132I_DG58:DC-58_J-0.3360.0730.165-11.576-10.8914.371
1135I_DG61:DC-61_J0.129-0.0350.4499.763-13.3447.452
1136I_DG62:DC-62_J-0.122-0.067-0.41-9.725-18.833-2.735
1138I_DG64:DC-64_J-0.037-0.175-0.0780.544-8.747-1.302
1139I_DG65:DC-65_J0.5110.114-0.1347.558-12.0336.862
1145I_DG71:DC-71_J-0.473-0.109-0.2341.555-4.2648.216
12I_DT-72:DA72_J-0.4-0.024-0.3454.692-12.9022.977
16I_DT-68:DA68_J-0.052-0.2540.12913.823-12.1833.188
18I_DT-66:DA66_J0.271-0.0530.215-0.2-12.755-0.713
114I_DT-60:DA60_J-0.094-0.120.063-2.682-23.7452.941
120I_DT-54:DA54_J0.1070.0970.4971.619-9.1262.665
123I_DT-51:DA51_J0.0130.1110.1266.535-26.654.811
132I_DT-42:DA42_J0.2620.089-0.5322.681-12.9078.152
134I_DT-40:DA40_J-0.31-0.161-0.2577.567-9.048-2.372
136I_DT-38:DA38_J-0.242-0.0240.089-4.86-10.3376.076
137I_DT-37:DA37_J-0.42-0.0630.711-15.967-11.1381.008
138I_DT-36:DA36_J-0.084-0.0610.878-13.396-11.7784.439
145I_DT-29:DA29_J-0.2260.0310.2543.106-14.32514.175
148I_DT-26:DA26_J-0.431-0.0340.267-9.086-34.4270.155
152I_DT-22:DA22_J0.4480.31-0.4286.931-16.5386.525
162I_DT-12:DA12_J0.046-0.2030.24-8.93-14.2533.9
164I_DT-10:DA10_J-0.447-0.222-0.137-8.2-13.4462.639
165I_DT-9:DA9_J-0.111-0.0390.259-7.528-14.914.261
170I_DT-4:DA4_J-0.270.0360.433-2.306-28.401-5.623
175I_DT1:DA-1_J0.18-0.024-0.014-0.909-14.0544.602
181I_DT7:DA-7_J-0.037-0.084-0.23-7.608-12.1152.827
187I_DT13:DA-13_J-0.245-0.0430.3391.933-14.5622.403
191I_DT17:DA-17_J-0.837-0.1740.334-16.195-22.9331.154
192I_DT18:DA-18_J0.2980.12-0.186-1.634-23.9723.819
193I_DT19:DA-19_J-0.119-0.082-0.6943.684-8.8548.107
194I_DT20:DA-20_J0.131-0.245-0.936-0.442-15.412.119
197I_DT23:DA-23_J-0.1410.044-0.01511.982-14.2821.468
1105I_DT31:DA-31_J0.3070.107-0.025-6.687-15.3971.63
1106I_DT32:DA-32_J0.0080.0480.633-10.447-12.8638.381
1107I_DT33:DA-33_J0.0730.244-0.039-7.884-26.629-0.086
1113I_DT39:DA-39_J-0.4740.179-0.44911.139-20.1574.017
1118I_DT44:DA-44_J-0.3520.120.367-6.325-11.665-0.96
1119I_DT45:DA-45_J-0.193-0.180.701-11.956-11.628-3.834
1120I_DT46:DA-46_J-0.695-0.0190.664-14.877-21.326-3.339
1121I_DT47:DA-47_J-0.180.1970.469-18.494-18.9551.624
1124I_DT50:DA-50_J1.1890.5220.736-4.087-25.87421.308
1127I_DT53:DA-53_J0.2360.027-0.445-1.84-15.926-2.27
1129I_DT55:DA-55_J-0.050.1310.4718.188-12.6791.666
1131I_DT57:DA-57_J-0.639-0.1661.252-14.143-13.453-1.604
1137I_DT63:DA-63_J-0.056-0.193-0.047-5.97-11.1141.705
1141I_DT67:DA-67_J0.518-0.091-0.0667.654-8.8074.696
1143I_DT69:DA-69_J-0.373-0.0920.51-3.652-17.7185.686
1144I_DT70:DA-70_J-0.0020.00.1621.261-14.7541.334
1147I_DT73:DA-73_J0.026-0.383-0.0197.941-13.454.698

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.