A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 5AVB  PDB ID: 5AVB 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA-73DT-72:DA72DT73_JJ-0.547-0.6413.123.747-0.56532.801-1.0371.5633.051-0.996-6.60833.013
14II_DA-70DA-69:DT69DT70_JJ-0.6560.1773.321-1.49-0.56736.0840.3680.8433.342-0.9152.40336.118
15II_DA-69DT-68:DA68DT69_JJ0.701-0.5773.0872.042-1.98730.993-0.712-0.9343.156-3.708-3.81231.121
17II_DA-67DT-66:DA66DT67_JJ0.223-1.1733.310.522-4.62134.89-1.228-0.2883.436-7.664-0.86535.189
111II_DA-63DC-62:DG62DT63_JJ0.848-0.8793.2150.4645.23231.642-2.497-1.4543.0469.512-0.84432.064
117II_DA-57DG-56:DC56DT57_JJ0.6630.2533.5550.556-0.96938.8590.509-0.9223.557-1.457-0.83638.875
119II_DA-55DT-54:DA54DT55_JJ0.096-0.6293.477-3.824-8.11735.7460.199-0.7163.504-12.9736.11136.819
121II_DA-53DC-52:DG52DT53_JJ-0.158-0.622.8024.5716.00825.985-2.5961.3052.53313.016-9.90227.042
124II_DA-50DC-49:DG49DT50_JJ0.523-0.1172.873-5.652-0.94930.616-0.062-1.9082.737-1.77810.58831.135
127II_DA-47DA-46:DT46DT47_JJ0.4330.073.5841.788-0.8737.9150.229-0.4153.598-1.338-2.7537.965
128II_DA-46DA-45:DT45DT46_JJ0.704-0.3773.2870.354-5.06533.5160.18-1.153.314-8.721-0.60933.887
129II_DA-45DA-44:DT44DT45_JJ0.128-0.1233.4352.694-1.11536.423-0.0340.1873.438-1.78-4.30236.535
130II_DA-44DG-43:DC43DT44_JJ0.225-0.5423.458-3.6577.64631.707-2.321-1.0493.19913.696.54832.792
135II_DA-39DT-38:DA38DT39_JJ0.469-0.5743.202-0.265-1.13433.381-0.814-0.8593.216-1.9740.46133.4
141II_DA-33DA-32:DT32DT33_JJ-0.0620.1523.311-0.8253.9740.35-0.23-0.0033.3115.7381.19240.545
142II_DA-32DA-31:DT31DT32_JJ0.191-0.2293.5060.15610.21530.109-2.41-0.3193.25818.988-0.29131.757
143II_DA-31DC-30:DG30DT31_JJ0.319-0.4782.997.4764.42327.524-1.8640.8882.8659.016-15.23928.837
151II_DA-23DT-22:DA22DT23_JJ0.148-0.2492.9610.971.40631.923-0.683-0.112.952.555-1.76231.967
154II_DA-20DA-19:DT19DT20_JJ0.3770.8882.997-0.50922.11823.545-2.477-0.7742.843.7661.00832.201
155II_DA-19DA-18:DT18DT19_JJ-0.7940.4162.951-2.5412.26626.4060.3591.1113.0374.9345.53326.621
156II_DA-18DA-17:DT17DT18_JJ-0.268-0.0913.485-0.517.71637.803-1.1540.3383.40511.7580.77738.558
157II_DA-17DG-16:DC16DT17_JJ1.7940.9663.3124.065-10.26634.6832.986-2.3073.095-16.705-6.61436.347
161II_DA-13DT-12:DA12DT13_JJ-0.343-0.2363.203-1.707-0.48736.0-0.3130.3173.219-0.7882.7636.042
167II_DA-7DG-6:DC6DT7_JJ-0.8491.3633.517-5.978-8.74539.7252.9440.5263.248-12.68.61341.058
173II_DA-1DA0:DT0DT1_JJ-0.128-0.3863.4320.2024.05135.687-1.230.2383.3686.584-0.32835.909
174II_DA0DT1:DA-1DT0_JJ-0.035-0.8583.2472.4154.94628.057-2.8270.6033.0410.079-4.92228.582
178II_DA4DG5:DC-5DT-4_JJ1.3340.5143.2073.08-5.52132.9541.785-1.8133.189-9.622-5.36833.538
183II_DA9DA10:DT-10DT-9_JJ0.3610.1763.5373.08811.09933.871-1.472-0.0993.44318.402-5.1235.722
184II_DA10DC11:DG-11DT-10_JJ0.241-0.3183.096-1.6973.87228.616-1.443-0.8363.0087.7793.4128.921
186II_DA12DT13:DA-13DT-12_JJ0.251-0.5653.4041.3850.81428.894-1.319-0.1833.3951.63-2.77228.938
196II_DA22DT23:DA-23DT-22_JJ-0.413-0.4892.9422.487-0.02328.983-0.9691.312.897-0.046-4.95929.087
1100II_DA26DG27:DC-27DT-26_JJ1.630.4763.091-1.243-6.5930.6122.026-3.2342.862-12.2972.31931.321
1103II_DA29DG30:DC-30DT-29_JJ-1.2210.5372.849-14.2335.81635.6650.1270.1713.1428.99822.0238.739
1110II_DA36DA37:DT-37DT-36_JJ0.338-0.0563.2892.7410.43538.024-0.141-0.1673.3030.666-4.19938.122
1111II_DA37DA38:DT-38DT-37_JJ-0.199-0.1413.4652.0060.4236.439-0.2860.6123.4480.671-3.20436.495
1112II_DA38DT39:DA-39DT-38_JJ-0.219-0.4663.1750.271-1.78931.189-0.5350.4563.194-3.323-0.50331.24
1114II_DA40DC41:DG-41DT-40_JJ-0.158-0.3713.07-3.3335.47333.074-1.472-0.2332.9749.5035.78733.672
1116II_DA42DC43:DG-43DT-42_JJ0.592-0.8223.4370.309-0.96234.885-1.217-0.9383.463-1.604-0.51534.899
1125II_DA51DG52:DC-52DT-51_JJ0.0470.2383.498-0.86111.31733.812-1.393-0.2123.39918.8121.43135.613
1128II_DA54DT55:DA-55DT-54_JJ-0.322-1.0723.3165.361-9.92335.493-0.291.2563.402-15.792-8.53237.187
1134II_DA60DG61:DC-61DT-60_JJ0.5040.4063.252-2.6294.5834.203-0.021-1.2513.2317.734.43734.597
1140II_DA66DT67:DA-67DT-66_JJ0.195-0.6973.0253.818-0.73633.051-1.1020.2533.042-1.288-6.68333.273
1142II_DA68DT69:DA-69DT-68_JJ0.095-0.7613.167-0.798-3.14128.544-0.843-0.3673.226-6.3441.61128.723
1146II_DA72DT73:DA-73DT-72_JJ0.706-1.1873.1043.056.32432.011-3.113-0.7662.87711.298-5.44832.752
13II_DC-71DA-70:DT70DG71_JJ-0.340.5023.431-4.6957.232.519-0.396-0.2363.47412.5858.20633.606
19II_DC-65DC-64:DG64DG65_JJ-0.1230.3843.0135.6439.1232.671-0.6851.0342.9515.694-9.7134.34
110II_DC-64DA-63:DT63DG64_JJ-0.9710.1523.287-6.5913.74835.503-0.2990.6043.4056.06110.65936.278
112II_DC-62DC-61:DG61DG62_JJ0.686-0.5113.3997.18511.32329.742-2.9630.0793.08620.781-13.18732.563
113II_DC-61DT-60:DA60DG61_JJ-1.020.6533.229-0.5136.91332.737-0.0191.6883.30912.0970.89733.443
116II_DC-58DA-57:DT57DG58_JJ0.422.4373.403-0.619-15.99442.7234.442-0.5942.384-21.090.81745.491
122II_DC-52DT-51:DA51DG52_JJ0.2090.2583.495-1.0410.66231.937-1.438-0.5453.39618.7311.82733.641
125II_DC-49DC-48:DG48DG49_JJ0.5470.1932.8528.03110.70326.585-1.6690.4682.77221.62-16.22429.708
126II_DC-48DA-47:DT47DG48_JJ-0.5572.7073.33-2.046-13.77844.0244.530.5532.444-17.8562.65246.07
144II_DC-30DT-29:DA29DG30_JJ1.4720.073.4651.6812.64634.698-1.732-2.083.35220.371-2.70636.901
147II_DC-27DT-26:DA26DG27_JJ-1.2180.6213.288-1.2380.1932.4311.0771.9593.3340.342.21532.455
149II_DC-25DC-24:DG24DG25_JJ-1.2330.5823.26-6.098-5.35237.1421.5871.1053.301-8.2819.43537.987
150II_DC-24DA-23:DT23DG24_JJ0.1470.6143.2373.26311.20534.01-0.6450.2393.27118.493-5.38535.9
153II_DC-21DA-20:DT20DG21_JJ0.2540.7223.6611.716.66624.212-2.864-0.0633.44634.891-3.55829.372
160II_DC-14DA-13:DT13DG14_JJ-0.8060.9233.603-7.1843.80736.2110.8690.173.7646.03111.38337.083
166II_DC-8DA-7:DT7DG8_JJ0.440.8763.3321.70310.49638.7210.011-0.4363.4615.478-2.51240.101
169II_DC-5DT-4:DA4DG5_JJ-1.0230.6413.453-0.971-4.33136.3751.6431.4883.382-6.9061.54836.636
176II_DC2DC3:DG-3DG-2_JJ-0.0910.1482.9712.6976.68432.9-0.7380.5582.92811.629-4.69233.659
177II_DC3DA4:DT-4DG-3_JJ-0.921.6333.492-2.658-7.05944.0192.8230.9583.254-9.3363.51644.629
180II_DC6DT7:DA-7DG-6_JJ1.2731.5013.5697.004-6.93444.8252.581-0.9733.463-8.964-9.05645.841
185II_DC11DA12:DT-12DG-11_JJ-0.4520.5893.401-2.22110.13936.266-0.4950.3913.45815.8923.48237.675
189II_DC15DC16:DG-16DG-15_JJ0.2241.7183.7643.625-12.70243.6163.4390.0583.178-16.647-4.75145.479
190II_DC16DT17:DA-17DG-16_JJ-0.3591.4053.432-0.301-8.1636.4613.2780.523.061-12.8450.47437.333
1102II_DC28DA29:DT-29DG-28_JJ1.4980.7913.81111.7747.95237.8560.016-0.4984.15711.763-17.41640.342
1108II_DC34DC35:DG-35DG-34_JJ-1.4311.2492.9670.2920.13730.8152.3262.7452.9590.258-0.54930.817
1109II_DC35DA36:DT-36DG-35_JJ0.4542.0613.5020.174-17.90341.3314.245-0.5792.453-24.053-0.23444.886
1115II_DC41DA42:DT-42DG-41_JJ-0.65-0.1243.379-2.0856.82933.581-1.3190.7633.32411.6573.55934.31
1117II_DC43DT44:DA-44DG-43_JJ0.091-0.753.3690.9433.08131.832-1.9280.0093.2855.6-1.71331.991
1130II_DC56DT57:DA-57DG-56_JJ-1.230.0493.2620.177-0.82734.1670.2142.1213.254-1.407-0.30234.177
1133II_DC59DA60:DT-60DG-59_JJ-0.7891.8683.403-2.797-3.53340.0293.1220.8223.279-5.1424.0740.272
115II_DG-59DC-58:DG58DC59_JJ0.0950.1532.7691.026.0831.241-0.667-0.0142.7511.153-1.87131.829
118II_DG-56DA-55:DT55DC56_JJ-0.026-0.3583.2072.398-0.55532.531-0.5430.4563.202-0.988-4.27332.622
131II_DG-43DT-42:DA42DC43_JJ-0.558-0.1093.1762.2140.96236.995-0.2961.1653.1351.514-3.48437.071
133II_DG-41DT-40:DA40DC41_JJ-0.709-0.4592.871-1.0956.04831.909-1.7411.12.76210.8761.96932.48
139II_DG-35DG-34:DC34DC35_JJ1.3091.2812.922-1.958-3.0831.7962.805-2.6792.706-5.5983.5632.0
140II_DG-34DA-33:DT33DC34_JJ-1.00.543.392-0.0463.54136.110.351.5993.4295.6950.07436.277
146II_DG-28DC-27:DG27DC28_JJ1.0421.0413.6084.2-3.66442.7821.814-0.9613.592-4.997-5.72843.127
158II_DG-16DG-15:DC15DC16_JJ-0.651.7484.061-2.756-9.61242.223.4830.563.631-13.1233.76343.335
159II_DG-15DC-14:DG14DC15_JJ1.2980.7863.72910.859-8.04837.462.255-0.4263.711-12.062-16.27339.742
163II_DG-11DT-10:DA10DC11_JJ-0.261-0.2513.071-0.355.19429.014-1.5270.4442.98410.2620.69229.467
168II_DG-6DC-5:DG5DC6_JJ1.1490.8853.4034.063-7.24736.4632.37-1.2393.279-11.4-6.39237.366
171II_DG-3DG-2:DC2DC3_JJ0.1180.4643.047-2.7775.66231.429-0.121-0.6863.0610.3235.06232.04
172II_DG-2DA-1:DT1DC2_JJ-0.753-0.1773.432-2.1175.35436.071-1.0610.8943.4098.5793.39236.512
179II_DG5DC6:DG-6DC-5_JJ-1.1451.0323.655-2.371-6.44737.0282.5241.4363.497-10.0463.69437.638
182II_DG8DA9:DT-9DC-8_JJ-0.8520.0633.3791.3155.14233.364-0.751.6863.3178.886-2.27233.772
188II_DG14DC15:DG-15DC-14_JJ-1.1520.6514.026-5.629-9.94938.922.3130.8873.875-14.5548.23440.501
195II_DG21DA22:DT-22DC-21_JJ-0.739-0.5323.403-0.8535.06835.038-1.6451.0853.3128.3611.40735.401
198II_DG24DG25:DC-25DC-24_JJ0.9660.6343.3893.783-0.87536.4631.133-0.9933.453-1.394-6.02436.662
199II_DG25DA26:DT-26DC-25_JJ-1.4741.2583.68-4.533-6.8244.3072.3311.4683.584-8.9525.94945.02
1101II_DG27DC28:DG-28DC-27_JJ-0.9870.43.6050.153-3.90337.9411.1521.5313.545-5.983-0.23538.134
1104II_DG30DT31:DA-31DC-30_JJ-0.788-0.513.2851.04610.2329.335-2.8711.6682.91719.462-1.98931.048
1122II_DG48DG49:DC-49DC-48_JJ-0.1670.0033.066-2.4596.38128.96-1.252-0.163.00212.5394.83329.739
1123II_DG49DT50:DA-50DC-49_JJ1.101-0.2023.3881.1571.02740.705-0.408-1.4493.4111.476-1.66240.733
1126II_DG52DT53:DA-53DC-52_JJ0.06-1.263.1921.2715.1827.365-3.7810.1612.90810.819-2.65527.87
1132II_DG58DC59:DG-59DC-58_JJ0.5310.5322.907-2.5444.58530.4440.203-1.4392.9018.654.79930.881
1135II_DG61DG62:DC-62DC-61_JJ-0.654-0.433.5972.53416.36633.784-2.9591.3723.02626.291-4.07137.518
1136II_DG62DT63:DA-63DC-62_JJ-0.401-0.7253.282-4.4522.0729.693-1.822-0.1433.2494.0058.61330.087
1138II_DG64DG65:DC-65DC-64_JJ0.7010.3413.2110.856.45834.136-0.411-1.0453.23610.879-1.43234.734
1139II_DG65DA66:DT-66DC-65_JJ-0.601-0.2433.399-6.277-0.25536.365-0.3470.0533.453-0.4059.96736.886
1145II_DG71DA72:DT-72DC-71_JJ-0.622-0.1183.365-7.236-3.28337.2710.256-0.013.42-5.06711.16638.079
12II_DT-72DC-71:DG71DA72_JJ0.8410.3623.1252.9055.53237.831-0.123-0.9283.1988.462-4.44338.325
16II_DT-68DA-67:DT67DA68_JJ-0.352-0.2433.608-2.134-3.54542.4350.0610.2463.629-4.8832.9442.627
18II_DT-66DC-65:DG65DA66_JJ1.13-0.3243.3131.673-6.21733.6720.457-1.6473.368-10.612-2.85634.264
114II_DT-60DG-59:DC59DA60_JJ0.2241.3133.637-0.269-3.10442.6372.143-0.3363.536-4.2630.36942.745
120II_DT-54DA-53:DT53DA54_JJ-0.085-1.2143.1844.8749.29432.888-3.3820.8422.71215.918-8.34834.478
123II_DT-51DA-50:DT50DA51_JJ-0.242-0.1423.7262.51619.30233.572-2.9110.7173.16630.449-3.9738.665
132II_DT-42DG-41:DC41DA42_JJ0.2820.2173.569-2.92111.52727.492-2.214-1.2143.34222.9435.81429.908
134II_DT-40DA-39:DT39DA40_JJ0.295-0.3073.8710.3877.12235.032-1.709-0.4143.74111.682-0.63635.728
136II_DT-38DT-37:DA37DA38_JJ0.15-0.3053.502-0.645-2.29538.164-0.155-0.3163.511-3.5050.98538.236
137II_DT-37DT-36:DA36DA37_JJ-0.181-0.263.206-1.0412.69831.657-0.9570.1443.1774.9331.90431.786
138II_DT-36DG-35:DC35DA36_JJ-0.8162.5983.4410.894-21.71645.774.4281.0152.069-26.252-1.08150.416
145II_DT-29DG-28:DC28DA29_JJ-1.490.9393.243-2.2222.7437.1821.12.0293.3814.2853.47437.343
148II_DT-26DC-25:DG25DA26_JJ1.5131.3723.465.018-1.78443.3572.028-1.5173.549-2.403-6.76143.667
152II_DT-22DC-21:DG21DA22_JJ0.2540.4473.255.3737.31933.274-0.4010.423.27212.494-9.17334.456
162II_DT-12DG-11:DC11DA12_JJ0.0830.133.4231.50811.18635.876-1.3390.0783.31617.629-2.37637.554
164II_DT-10DT-9:DA9DA10_JJ-0.1850.0563.409-3.1547.32633.305-1.115-0.2063.34912.565.40634.22
165II_DT-9DC-8:DG8DA9_JJ0.4570.2113.0194.7064.00731.749-0.286-0.043.0567.239-8.50132.329
170II_DT-4DG-3:DC3DA4_JJ1.0421.5963.462.314-4.17741.382.706-1.2113.342-5.888-3.26141.642
175II_DT1DC2:DG-2DA-1_JJ0.143-0.273.468-1.3297.45731.275-1.89-0.5073.30913.5842.4232.157
181II_DT7DG8:DC-8DA-7_JJ-0.3270.953.111-5.9489.19734.410.233-0.3143.2615.0799.75336.06
187II_DT13DG14:DC-14DA-13_JJ1.0550.4983.2052.4555.5835.790.018-1.353.3058.999-3.95936.289
191II_DT17DT18:DA-18DA-17_JJ0.0620.2762.9220.4476.02637.413-0.271-0.0442.939.319-0.69137.88
192II_DT18DT19:DA-19DA-18_JJ0.6530.3583.2023.2276.06129.614-0.535-0.5983.2611.661-6.20930.382
193II_DT19DT20:DA-20DA-19_JJ-0.1630.3873.4472.38816.39227.702-2.4920.7593.15830.976-4.51332.193
194II_DT20DG21:DC-21DA-20_JJ0.803-0.1823.255-7.80420.55822.32-4.044-2.8982.02442.17216.00931.234
197II_DT23DG24:DC-24DA-23_JJ0.1930.6353.317-1.5266.57236.5640.094-0.5123.36610.3662.40737.161
1105II_DT31DT32:DA-32DA-31_JJ0.084-0.1263.486-1.3833.30629.308-0.996-0.4783.4436.5042.7229.521
1106II_DT32DT33:DA-33DA-32_JJ-0.427-0.0793.1134.8985.39238.887-0.7131.1743.0038.014-7.27939.538
1107II_DT33DC34:DG-34DA-33_JJ1.6760.7243.3112.4943.738.4320.621-2.2133.4615.598-3.77338.68
1113II_DT39DA40:DT-40DA-39_JJ-0.05-0.1493.842-5.91512.56434.921-2.161-0.8313.54619.9869.4137.5
1118II_DT44DT45:DA-45DA-44_JJ0.036-0.3093.452-0.095-4.65836.9990.171-0.073.464-7.3050.14937.281
1119II_DT45DT46:DA-46DA-45_JJ-0.305-0.3783.2592.023-9.03135.3850.6550.7683.233-14.553-3.2636.538
1120II_DT46DT47:DA-47DA-46_JJ0.0010.0923.3593.183-4.31537.3540.7150.423.318-6.695-4.93837.723
1121II_DT47DG48:DC-48DA-47_JJ0.4852.0683.2750.887-10.82539.8844.01-0.62.659-15.523-1.27241.278
1124II_DT50DA51:DT-51DA-50_JJ-1.236-0.3872.9795.35514.65223.552-3.6833.5932.06731.812-11.62628.189
1127II_DT53DA54:DT-54DA-53_JJ0.841-0.3593.016-8.0455.80531.003-1.538-2.7432.61310.52814.58932.515
1129II_DT55DC56:DG-56DA-55_JJ1.12-0.883.573-2.3951.15332.792-1.766-2.4183.4522.0394.23432.896
1131II_DT57DG58:DC-58DA-57_JJ-0.3972.6743.352.956-14.01748.3314.0660.6622.505-16.698-3.52250.287
1137II_DT63DG64:DC-64DA-63_JJ0.2390.1243.2361.8858.92631.075-1.352-0.0973.15816.227-3.42732.355
1141II_DT67DA68:DT-68DA-67_JJ-0.6640.2653.81-4.054-7.27141.8111.2220.4363.76-10.0685.61342.596
1143II_DT69DT70:DA-70DA-69_JJ0.292-0.0843.0642.840.44137.773-0.183-0.1073.0750.68-4.37937.878
1144II_DT70DG71:DC-71DA-70_JJ0.970.3153.3495.2525.45431.209-0.465-0.7573.4679.955-9.58632.093

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.