5AVC: Base Pair Morphology Parameters

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As of 11-Dec-2019 number of released structures: 10507

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NDB ID: 5AVC PDB ID: 5AVC

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	I_DA-73:DT73_J	-0.354	-0.23	0.05	-2.831	3.897	-1.357
1	4	I_DA-70:DT70_J	0.361	0.206	0.254	6.114	-15.463	9.279
1	5	I_DA-69:DT69_J	0.302	-0.198	0.287	7.31	-15.874	0.544
1	7	I_DA-67:DT67_J	0.754	-0.105	0.345	2.832	-15.345	-2.277
1	11	I_DA-63:DT63_J	0.455	-0.218	0.049	1.97	-7.383	-9.842
1	17	I_DA-57:DT57_J	-0.05	-0.079	0.594	8.708	-23.866	3.911
1	19	I_DA-55:DT55_J	-0.58	0.051	-0.117	-0.473	-16.574	0.735
1	21	I_DA-53:DT53_J	-0.44	-0.11	0.231	-7.768	-13.093	-6.705
1	24	I_DA-50:DT50_J	0.293	0.299	-0.529	-16.571	-23.575	0.551
1	27	I_DA-47:DT47_J	-0.038	-0.15	0.561	24.971	-25.531	-1.165
1	28	I_DA-46:DT46_J	0.892	0.04	0.403	18.238	-31.403	-6.247
1	29	I_DA-45:DT45_J	-0.214	-0.103	0.068	6.872	-25.506	4.506
1	30	I_DA-44:DT44_J	0.286	0.075	0.007	2.045	-12.824	5.703
1	35	I_DA-39:DT39_J	-0.315	-0.158	0.091	-6.506	-18.886	-1.544
1	41	I_DA-33:DT33_J	-0.607	0.171	0.515	13.601	-18.77	5.117
1	42	I_DA-32:DT32_J	0.542	-0.125	0.286	7.859	-20.168	2.123
1	43	I_DA-31:DT31_J	-0.207	0.202	0.457	2.416	-15.004	1.109
1	51	I_DA-23:DT23_J	-0.047	-0.11	-0.1	-7.725	-16.27	5.008
1	54	I_DA-20:DT20_J	-0.287	0.327	-0.508	-14.771	-11.582	6.991
1	55	I_DA-19:DT19_J	0.45	0.222	-0.41	1.731	-5.478	17.088
1	56	I_DA-18:DT18_J	-0.903	-0.18	0.051	4.927	-28.285	3.752
1	57	I_DA-17:DT17_J	-0.491	-0.082	0.375	-5.473	-33.241	5.121
1	61	I_DA-13:DT13_J	-0.411	0.061	0.187	-16.306	-8.563	3.686
1	67	I_DA-7:DT7_J	0.316	-0.173	-0.114	3.573	-12.661	1.016
1	73	I_DA-1:DT1_J	0.253	-0.148	0.399	1.781	-9.964	-1.997
1	74	I_DA0:DT0_J	0.942	-0.31	0.385	-2.801	-10.989	2.773
1	78	I_DA4:DT-4_J	0.617	0.104	0.383	2.753	-30.104	-4.765
1	83	I_DA9:DT-9_J	0.043	-0.016	0.055	5.208	-17.151	1.281
1	84	I_DA10:DT-10_J	0.167	-0.104	-0.644	-2.794	-14.866	4.411
1	86	I_DA12:DT-12_J	0.396	0.059	0.501	3.686	-13.445	4.067
1	96	I_DA22:DT-22_J	0.022	-0.097	-0.36	-8.624	-5.226	0.026
1	100	I_DA26:DT-26_J	0.805	0.11	0.591	3.021	-32.91	-0.962
1	103	I_DA29:DT-29_J	-0.594	0.01	-0.567	-18.855	-19.875	16.297
1	110	I_DA36:DT-36_J	-0.766	-0.397	0.714	7.315	-9.95	-3.337
1	111	I_DA37:DT-37_J	0.44	-0.176	0.397	13.048	-10.674	-0.422
1	112	I_DA38:DT-38_J	0.258	-0.305	-0.17	7.675	-9.961	-1.035
1	114	I_DA40:DT-40_J	-0.586	-0.231	-0.075	-14.21	-9.536	2.813
1	116	I_DA42:DT-42_J	-0.058	-0.322	-0.191	2.543	-16.67	-0.133
1	124	I_DA51:DT-51_J	-0.113	-0.145	-0.253	0.022	-16.825	-3.105
1	127	I_DA54:DT-54_J	-0.324	-0.144	0.866	-0.342	-3.438	6.556
1	133	I_DA60:DT-60_J	-0.464	0.087	0.426	2.76	-21.893	5.231
1	139	I_DA66:DT-66_J	-0.369	-0.005	0.313	-1.63	-9.937	3.681
1	141	I_DA68:DT-68_J	0.335	-0.227	0.192	-12.34	-7.961	-3.938
1	145	I_DA72:DT-72_J	0.053	-0.085	0.288	3.167	-15.496	3.141
1	3	I_DC-71:DG71_J	0.792	-0.118	-0.839	12.654	-7.116	6.703
1	9	I_DC-65:DG65_J	-0.691	0.293	0.378	-3.993	-14.619	11.661
1	10	I_DC-64:DG64_J	-0.045	0.029	0.052	-0.13	-6.0	0.924
1	12	I_DC-62:DG62_J	0.633	0.018	0.115	8.474	-10.348	5.761
1	13	I_DC-61:DG61_J	-0.329	0.308	0.25	-2.333	-14.964	13.784
1	16	I_DC-58:DG58_J	0.486	-0.006	-0.072	9.744	-4.748	2.923
1	22	I_DC-52:DG52_J	-0.143	-0.214	-0.52	19.206	-13.784	1.384
1	25	I_DC-49:DG49_J	0.973	0.117	0.3	2.832	-11.349	7.57
1	26	I_DC-48:DG48_J	-0.006	0.315	-0.245	16.849	-12.716	12.239
1	44	I_DC-30:DG30_J	-0.427	0.191	-0.385	16.241	-16.277	1.98
1	47	I_DC-27:DG27_J	0.23	0.059	0.208	-5.266	-15.426	7.491
1	49	I_DC-25:DG25_J	0.235	-0.039	-0.488	-8.37	-0.234	9.011
1	50	I_DC-24:DG24_J	0.555	0.106	-0.132	-2.404	-16.921	2.529
1	53	I_DC-21:DG21_J	0.486	-0.119	-0.494	4.539	-27.294	12.472
1	60	I_DC-14:DG14_J	-0.4	0.113	-0.071	-16.329	-7.588	10.613
1	66	I_DC-8:DG8_J	0.23	0.171	-0.112	3.998	-11.801	8.101
1	69	I_DC-5:DG5_J	-0.188	-0.163	0.314	-2.888	-3.551	4.384
1	76	I_DC2:DG-2_J	-0.099	0.0	0.273	-6.182	-11.886	4.681
1	77	I_DC3:DG-3_J	0.239	-0.107	0.038	6.988	-8.727	3.126
1	80	I_DC6:DG-6_J	-0.254	-0.164	0.591	-1.156	-33.197	-1.394
1	85	I_DC11:DG-11_J	-0.364	-0.085	-0.052	4.807	-15.417	6.929
1	89	I_DC15:DG-15_J	0.289	0.026	1.324	-4.354	-30.848	-0.205
1	90	I_DC16:DG-16_J	0.103	-0.116	0.785	-13.501	-8.911	-1.595
1	102	I_DC28:DG-28_J	0.312	0.026	0.125	6.178	-28.736	1.774
1	108	I_DC34:DG-34_J	0.175	0.429	0.958	-18.21	0.011	10.766
1	109	I_DC35:DG-35_J	0.262	-0.094	0.975	4.773	-9.694	-0.46
1	115	I_DC41:DG-41_J	-0.188	-0.185	-0.165	4.637	-1.084	3.371
1	117	I_DC43:DG-43_J	0.919	-0.052	0.009	2.112	-14.289	2.132
1	129	I_DC56:DG-56_J	-0.863	0.528	1.295	-11.045	-19.074	14.854
1	132	I_DC59:DG-59_J	0.575	0.399	0.496	5.517	-10.252	9.397
1	15	I_DG-59:DC59_J	-0.95	-0.02	0.0	-13.063	-5.396	-0.097
1	18	I_DG-56:DC56_J	1.277	0.094	0.341	8.429	-16.927	4.731
1	31	I_DG-43:DC43_J	-0.614	0.23	0.03	-5.706	-8.596	8.315
1	33	I_DG-41:DC41_J	-0.906	-0.201	-0.403	-11.787	-6.472	6.759
1	39	I_DG-35:DC35_J	-1.025	-0.262	0.534	-8.54	-21.213	0.552
1	40	I_DG-34:DC34_J	-0.637	-0.013	0.483	12.851	13.247	6.696
1	46	I_DG-28:DC28_J	-0.225	-0.018	0.19	3.938	-29.686	-0.268
1	58	I_DG-16:DC16_J	-1.113	0.02	0.38	12.077	2.708	11.396
1	59	I_DG-15:DC15_J	-0.237	-0.246	1.335	-1.817	-33.765	-2.535
1	63	I_DG-11:DC11_J	-0.458	0.232	-0.141	-20.752	-13.189	5.394
1	68	I_DG-6:DC6_J	-0.195	-0.223	0.426	-0.413	-31.906	-1.554
1	71	I_DG-3:DC3_J	-0.491	0.099	0.452	-1.511	-6.921	6.545
1	72	I_DG-2:DC2_J	-0.014	0.114	0.264	7.253	-6.859	7.301
1	79	I_DG5:DC-5_J	0.0	-0.116	0.25	2.269	-4.625	2.438
1	82	I_DG8:DC-8_J	0.028	0.071	0.496	0.75	-7.631	7.628
1	88	I_DG14:DC-14_J	0.017	-0.121	0.262	5.764	2.341	3.624
1	95	I_DG21:DC-21_J	-0.255	-0.073	0.037	2.309	-17.713	11.744
1	98	I_DG24:DC-24_J	0.012	0.122	0.319	10.671	-17.699	2.062
1	99	I_DG25:DC-25_J	0.022	-0.23	-0.147	6.759	-0.856	4.312
1	101	I_DG27:DC-27_J	-0.464	0.089	0.7	8.29	-5.586	6.968
1	104	I_DG30:DC-30_J	0.347	0.231	0.356	-5.068	-8.828	10.081
1	122	I_DG48:DC-48_J	-0.017	0.431	0.165	-8.055	-6.397	10.18
1	123	I_DG49:DC-49_J	-0.616	0.363	0.374	3.725	-7.329	6.075
1	125	I_DG52:DC-52_J	0.427	-0.45	-0.186	-4.453	-18.464	-3.709
1	131	I_DG58:DC-58_J	-0.255	0.048	0.094	-14.711	-11.887	3.018
1	134	I_DG61:DC-61_J	0.058	0.04	0.278	9.434	-16.319	7.29
1	135	I_DG62:DC-62_J	-0.268	-0.05	-0.191	-10.77	-15.385	-0.923
1	137	I_DG64:DC-64_J	-0.164	-0.207	0.036	0.68	-8.379	-2.622
1	138	I_DG65:DC-65_J	0.936	0.21	-0.456	0.942	-15.893	11.068
1	144	I_DG71:DC-71_J	-0.723	-0.017	-0.334	-1.039	-6.403	8.256
1	2	I_DT-72:DA72_J	-0.294	-0.078	-0.304	4.085	-12.19	2.149
1	6	I_DT-68:DA68_J	-0.169	-0.238	0.044	16.21	-8.921	-0.774
1	8	I_DT-66:DA66_J	0.481	-0.089	0.075	0.369	-13.697	-0.369
1	14	I_DT-60:DA60_J	-0.131	-0.113	0.086	-4.905	-24.526	5.159
1	20	I_DT-54:DA54_J	-0.154	0.187	0.242	2.053	-10.921	5.322
1	23	I_DT-51:DA51_J	0.179	-0.04	-0.154	11.335	-25.279	0.677
1	32	I_DT-42:DA42_J	0.009	0.124	-0.678	3.087	-13.574	7.35
1	34	I_DT-40:DA40_J	-0.481	-0.209	0.214	1.67	-3.317	-1.924
1	36	I_DT-38:DA38_J	0.009	-0.069	0.296	-6.999	-8.28	4.164
1	37	I_DT-37:DA37_J	-0.438	-0.117	0.899	-17.248	-11.144	0.345
1	38	I_DT-36:DA36_J	-0.064	-0.118	0.99	-13.259	-11.535	1.487
1	45	I_DT-29:DA29_J	-0.086	-0.064	0.006	4.926	-14.902	13.206
1	48	I_DT-26:DA26_J	-0.518	-0.043	0.538	-12.275	-32.145	-1.166
1	52	I_DT-22:DA22_J	0.37	0.391	-0.115	5.752	-15.065	6.299
1	62	I_DT-12:DA12_J	-0.351	-0.135	0.558	-10.694	-11.116	2.685
1	64	I_DT-10:DA10_J	-0.356	-0.148	0.272	-9.998	-12.992	3.745
1	65	I_DT-9:DA9_J	-0.215	-0.082	0.389	-6.138	-14.17	2.181
1	70	I_DT-4:DA4_J	-0.214	0.022	0.417	-0.835	-28.859	-7.262
1	75	I_DT1:DA-1_J	0.216	-0.129	0.261	-3.519	-11.386	1.941
1	81	I_DT7:DA-7_J	-0.157	-0.177	-0.008	-9.544	-13.1	1.64
1	87	I_DT13:DA-13_J	-0.305	-0.078	0.299	4.925	-12.403	1.34
1	91	I_DT17:DA-17_J	-0.852	-0.159	0.266	-14.535	-24.66	1.817
1	92	I_DT18:DA-18_J	0.131	0.205	-0.263	-1.022	-24.491	5.592
1	93	I_DT19:DA-19_J	0.176	-0.096	-0.576	0.297	-12.794	9.951
1	94	I_DT20:DA-20_J	0.329	-0.296	-0.822	0.914	-15.349	2.234
1	97	I_DT23:DA-23_J	-0.086	0.083	-0.097	11.481	-13.592	3.427
1	105	I_DT31:DA-31_J	0.368	0.143	0.121	-7.627	-15.71	-0.224
1	106	I_DT32:DA-32_J	-0.116	0.003	0.384	-9.064	-12.23	4.979
1	107	I_DT33:DA-33_J	0.173	0.241	0.103	-10.525	-25.848	-0.561
1	113	I_DT39:DA-39_J	-0.483	0.133	-0.704	8.919	-22.758	2.445
1	118	I_DT44:DA-44_J	-0.195	0.12	0.48	-6.69	-15.193	-0.697
1	119	I_DT45:DA-45_J	-0.218	-0.314	0.628	-14.3	-9.247	-4.278
1	120	I_DT46:DA-46_J	-0.901	0.082	0.586	-14.79	-20.742	-3.184
1	121	I_DT47:DA-47_J	0.015	0.168	0.337	-16.091	-20.501	2.146
1	126	I_DT53:DA-53_J	0.41	0.126	-0.588	0.003	-17.524	1.082
1	128	I_DT55:DA-55_J	-0.063	0.219	0.62	5.554	-13.399	2.94
1	130	I_DT57:DA-57_J	-0.651	-0.148	1.172	-13.747	-13.479	0.803
1	136	I_DT63:DA-63_J	-0.01	-0.162	-0.011	-4.916	-8.81	-0.285
1	140	I_DT67:DA-67_J	0.626	-0.082	0.007	8.123	-11.002	4.639
1	142	I_DT69:DA-69_J	-0.458	-0.325	0.616	-3.22	-15.877	1.597
1	143	I_DT70:DA-70_J	-0.007	-0.068	0.203	-0.657	-13.669	0.223
1	146	I_DT73:DA-73_J	0.108	-0.356	-0.199	6.887	-16.421	4.381

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.