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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID:
5AVC
PDB ID:
5AVC
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
I_DA-73:DT73_J
-0.354
-0.23
0.05
-2.831
3.897
-1.357
1
4
I_DA-70:DT70_J
0.361
0.206
0.254
6.114
-15.463
9.279
1
5
I_DA-69:DT69_J
0.302
-0.198
0.287
7.31
-15.874
0.544
1
7
I_DA-67:DT67_J
0.754
-0.105
0.345
2.832
-15.345
-2.277
1
11
I_DA-63:DT63_J
0.455
-0.218
0.049
1.97
-7.383
-9.842
1
17
I_DA-57:DT57_J
-0.05
-0.079
0.594
8.708
-23.866
3.911
1
19
I_DA-55:DT55_J
-0.58
0.051
-0.117
-0.473
-16.574
0.735
1
21
I_DA-53:DT53_J
-0.44
-0.11
0.231
-7.768
-13.093
-6.705
1
24
I_DA-50:DT50_J
0.293
0.299
-0.529
-16.571
-23.575
0.551
1
27
I_DA-47:DT47_J
-0.038
-0.15
0.561
24.971
-25.531
-1.165
1
28
I_DA-46:DT46_J
0.892
0.04
0.403
18.238
-31.403
-6.247
1
29
I_DA-45:DT45_J
-0.214
-0.103
0.068
6.872
-25.506
4.506
1
30
I_DA-44:DT44_J
0.286
0.075
0.007
2.045
-12.824
5.703
1
35
I_DA-39:DT39_J
-0.315
-0.158
0.091
-6.506
-18.886
-1.544
1
41
I_DA-33:DT33_J
-0.607
0.171
0.515
13.601
-18.77
5.117
1
42
I_DA-32:DT32_J
0.542
-0.125
0.286
7.859
-20.168
2.123
1
43
I_DA-31:DT31_J
-0.207
0.202
0.457
2.416
-15.004
1.109
1
51
I_DA-23:DT23_J
-0.047
-0.11
-0.1
-7.725
-16.27
5.008
1
54
I_DA-20:DT20_J
-0.287
0.327
-0.508
-14.771
-11.582
6.991
1
55
I_DA-19:DT19_J
0.45
0.222
-0.41
1.731
-5.478
17.088
1
56
I_DA-18:DT18_J
-0.903
-0.18
0.051
4.927
-28.285
3.752
1
57
I_DA-17:DT17_J
-0.491
-0.082
0.375
-5.473
-33.241
5.121
1
61
I_DA-13:DT13_J
-0.411
0.061
0.187
-16.306
-8.563
3.686
1
67
I_DA-7:DT7_J
0.316
-0.173
-0.114
3.573
-12.661
1.016
1
73
I_DA-1:DT1_J
0.253
-0.148
0.399
1.781
-9.964
-1.997
1
74
I_DA0:DT0_J
0.942
-0.31
0.385
-2.801
-10.989
2.773
1
78
I_DA4:DT-4_J
0.617
0.104
0.383
2.753
-30.104
-4.765
1
83
I_DA9:DT-9_J
0.043
-0.016
0.055
5.208
-17.151
1.281
1
84
I_DA10:DT-10_J
0.167
-0.104
-0.644
-2.794
-14.866
4.411
1
86
I_DA12:DT-12_J
0.396
0.059
0.501
3.686
-13.445
4.067
1
96
I_DA22:DT-22_J
0.022
-0.097
-0.36
-8.624
-5.226
0.026
1
100
I_DA26:DT-26_J
0.805
0.11
0.591
3.021
-32.91
-0.962
1
103
I_DA29:DT-29_J
-0.594
0.01
-0.567
-18.855
-19.875
16.297
1
110
I_DA36:DT-36_J
-0.766
-0.397
0.714
7.315
-9.95
-3.337
1
111
I_DA37:DT-37_J
0.44
-0.176
0.397
13.048
-10.674
-0.422
1
112
I_DA38:DT-38_J
0.258
-0.305
-0.17
7.675
-9.961
-1.035
1
114
I_DA40:DT-40_J
-0.586
-0.231
-0.075
-14.21
-9.536
2.813
1
116
I_DA42:DT-42_J
-0.058
-0.322
-0.191
2.543
-16.67
-0.133
1
124
I_DA51:DT-51_J
-0.113
-0.145
-0.253
0.022
-16.825
-3.105
1
127
I_DA54:DT-54_J
-0.324
-0.144
0.866
-0.342
-3.438
6.556
1
133
I_DA60:DT-60_J
-0.464
0.087
0.426
2.76
-21.893
5.231
1
139
I_DA66:DT-66_J
-0.369
-0.005
0.313
-1.63
-9.937
3.681
1
141
I_DA68:DT-68_J
0.335
-0.227
0.192
-12.34
-7.961
-3.938
1
145
I_DA72:DT-72_J
0.053
-0.085
0.288
3.167
-15.496
3.141
1
3
I_DC-71:DG71_J
0.792
-0.118
-0.839
12.654
-7.116
6.703
1
9
I_DC-65:DG65_J
-0.691
0.293
0.378
-3.993
-14.619
11.661
1
10
I_DC-64:DG64_J
-0.045
0.029
0.052
-0.13
-6.0
0.924
1
12
I_DC-62:DG62_J
0.633
0.018
0.115
8.474
-10.348
5.761
1
13
I_DC-61:DG61_J
-0.329
0.308
0.25
-2.333
-14.964
13.784
1
16
I_DC-58:DG58_J
0.486
-0.006
-0.072
9.744
-4.748
2.923
1
22
I_DC-52:DG52_J
-0.143
-0.214
-0.52
19.206
-13.784
1.384
1
25
I_DC-49:DG49_J
0.973
0.117
0.3
2.832
-11.349
7.57
1
26
I_DC-48:DG48_J
-0.006
0.315
-0.245
16.849
-12.716
12.239
1
44
I_DC-30:DG30_J
-0.427
0.191
-0.385
16.241
-16.277
1.98
1
47
I_DC-27:DG27_J
0.23
0.059
0.208
-5.266
-15.426
7.491
1
49
I_DC-25:DG25_J
0.235
-0.039
-0.488
-8.37
-0.234
9.011
1
50
I_DC-24:DG24_J
0.555
0.106
-0.132
-2.404
-16.921
2.529
1
53
I_DC-21:DG21_J
0.486
-0.119
-0.494
4.539
-27.294
12.472
1
60
I_DC-14:DG14_J
-0.4
0.113
-0.071
-16.329
-7.588
10.613
1
66
I_DC-8:DG8_J
0.23
0.171
-0.112
3.998
-11.801
8.101
1
69
I_DC-5:DG5_J
-0.188
-0.163
0.314
-2.888
-3.551
4.384
1
76
I_DC2:DG-2_J
-0.099
0.0
0.273
-6.182
-11.886
4.681
1
77
I_DC3:DG-3_J
0.239
-0.107
0.038
6.988
-8.727
3.126
1
80
I_DC6:DG-6_J
-0.254
-0.164
0.591
-1.156
-33.197
-1.394
1
85
I_DC11:DG-11_J
-0.364
-0.085
-0.052
4.807
-15.417
6.929
1
89
I_DC15:DG-15_J
0.289
0.026
1.324
-4.354
-30.848
-0.205
1
90
I_DC16:DG-16_J
0.103
-0.116
0.785
-13.501
-8.911
-1.595
1
102
I_DC28:DG-28_J
0.312
0.026
0.125
6.178
-28.736
1.774
1
108
I_DC34:DG-34_J
0.175
0.429
0.958
-18.21
0.011
10.766
1
109
I_DC35:DG-35_J
0.262
-0.094
0.975
4.773
-9.694
-0.46
1
115
I_DC41:DG-41_J
-0.188
-0.185
-0.165
4.637
-1.084
3.371
1
117
I_DC43:DG-43_J
0.919
-0.052
0.009
2.112
-14.289
2.132
1
129
I_DC56:DG-56_J
-0.863
0.528
1.295
-11.045
-19.074
14.854
1
132
I_DC59:DG-59_J
0.575
0.399
0.496
5.517
-10.252
9.397
1
15
I_DG-59:DC59_J
-0.95
-0.02
0.0
-13.063
-5.396
-0.097
1
18
I_DG-56:DC56_J
1.277
0.094
0.341
8.429
-16.927
4.731
1
31
I_DG-43:DC43_J
-0.614
0.23
0.03
-5.706
-8.596
8.315
1
33
I_DG-41:DC41_J
-0.906
-0.201
-0.403
-11.787
-6.472
6.759
1
39
I_DG-35:DC35_J
-1.025
-0.262
0.534
-8.54
-21.213
0.552
1
40
I_DG-34:DC34_J
-0.637
-0.013
0.483
12.851
13.247
6.696
1
46
I_DG-28:DC28_J
-0.225
-0.018
0.19
3.938
-29.686
-0.268
1
58
I_DG-16:DC16_J
-1.113
0.02
0.38
12.077
2.708
11.396
1
59
I_DG-15:DC15_J
-0.237
-0.246
1.335
-1.817
-33.765
-2.535
1
63
I_DG-11:DC11_J
-0.458
0.232
-0.141
-20.752
-13.189
5.394
1
68
I_DG-6:DC6_J
-0.195
-0.223
0.426
-0.413
-31.906
-1.554
1
71
I_DG-3:DC3_J
-0.491
0.099
0.452
-1.511
-6.921
6.545
1
72
I_DG-2:DC2_J
-0.014
0.114
0.264
7.253
-6.859
7.301
1
79
I_DG5:DC-5_J
0.0
-0.116
0.25
2.269
-4.625
2.438
1
82
I_DG8:DC-8_J
0.028
0.071
0.496
0.75
-7.631
7.628
1
88
I_DG14:DC-14_J
0.017
-0.121
0.262
5.764
2.341
3.624
1
95
I_DG21:DC-21_J
-0.255
-0.073
0.037
2.309
-17.713
11.744
1
98
I_DG24:DC-24_J
0.012
0.122
0.319
10.671
-17.699
2.062
1
99
I_DG25:DC-25_J
0.022
-0.23
-0.147
6.759
-0.856
4.312
1
101
I_DG27:DC-27_J
-0.464
0.089
0.7
8.29
-5.586
6.968
1
104
I_DG30:DC-30_J
0.347
0.231
0.356
-5.068
-8.828
10.081
1
122
I_DG48:DC-48_J
-0.017
0.431
0.165
-8.055
-6.397
10.18
1
123
I_DG49:DC-49_J
-0.616
0.363
0.374
3.725
-7.329
6.075
1
125
I_DG52:DC-52_J
0.427
-0.45
-0.186
-4.453
-18.464
-3.709
1
131
I_DG58:DC-58_J
-0.255
0.048
0.094
-14.711
-11.887
3.018
1
134
I_DG61:DC-61_J
0.058
0.04
0.278
9.434
-16.319
7.29
1
135
I_DG62:DC-62_J
-0.268
-0.05
-0.191
-10.77
-15.385
-0.923
1
137
I_DG64:DC-64_J
-0.164
-0.207
0.036
0.68
-8.379
-2.622
1
138
I_DG65:DC-65_J
0.936
0.21
-0.456
0.942
-15.893
11.068
1
144
I_DG71:DC-71_J
-0.723
-0.017
-0.334
-1.039
-6.403
8.256
1
2
I_DT-72:DA72_J
-0.294
-0.078
-0.304
4.085
-12.19
2.149
1
6
I_DT-68:DA68_J
-0.169
-0.238
0.044
16.21
-8.921
-0.774
1
8
I_DT-66:DA66_J
0.481
-0.089
0.075
0.369
-13.697
-0.369
1
14
I_DT-60:DA60_J
-0.131
-0.113
0.086
-4.905
-24.526
5.159
1
20
I_DT-54:DA54_J
-0.154
0.187
0.242
2.053
-10.921
5.322
1
23
I_DT-51:DA51_J
0.179
-0.04
-0.154
11.335
-25.279
0.677
1
32
I_DT-42:DA42_J
0.009
0.124
-0.678
3.087
-13.574
7.35
1
34
I_DT-40:DA40_J
-0.481
-0.209
0.214
1.67
-3.317
-1.924
1
36
I_DT-38:DA38_J
0.009
-0.069
0.296
-6.999
-8.28
4.164
1
37
I_DT-37:DA37_J
-0.438
-0.117
0.899
-17.248
-11.144
0.345
1
38
I_DT-36:DA36_J
-0.064
-0.118
0.99
-13.259
-11.535
1.487
1
45
I_DT-29:DA29_J
-0.086
-0.064
0.006
4.926
-14.902
13.206
1
48
I_DT-26:DA26_J
-0.518
-0.043
0.538
-12.275
-32.145
-1.166
1
52
I_DT-22:DA22_J
0.37
0.391
-0.115
5.752
-15.065
6.299
1
62
I_DT-12:DA12_J
-0.351
-0.135
0.558
-10.694
-11.116
2.685
1
64
I_DT-10:DA10_J
-0.356
-0.148
0.272
-9.998
-12.992
3.745
1
65
I_DT-9:DA9_J
-0.215
-0.082
0.389
-6.138
-14.17
2.181
1
70
I_DT-4:DA4_J
-0.214
0.022
0.417
-0.835
-28.859
-7.262
1
75
I_DT1:DA-1_J
0.216
-0.129
0.261
-3.519
-11.386
1.941
1
81
I_DT7:DA-7_J
-0.157
-0.177
-0.008
-9.544
-13.1
1.64
1
87
I_DT13:DA-13_J
-0.305
-0.078
0.299
4.925
-12.403
1.34
1
91
I_DT17:DA-17_J
-0.852
-0.159
0.266
-14.535
-24.66
1.817
1
92
I_DT18:DA-18_J
0.131
0.205
-0.263
-1.022
-24.491
5.592
1
93
I_DT19:DA-19_J
0.176
-0.096
-0.576
0.297
-12.794
9.951
1
94
I_DT20:DA-20_J
0.329
-0.296
-0.822
0.914
-15.349
2.234
1
97
I_DT23:DA-23_J
-0.086
0.083
-0.097
11.481
-13.592
3.427
1
105
I_DT31:DA-31_J
0.368
0.143
0.121
-7.627
-15.71
-0.224
1
106
I_DT32:DA-32_J
-0.116
0.003
0.384
-9.064
-12.23
4.979
1
107
I_DT33:DA-33_J
0.173
0.241
0.103
-10.525
-25.848
-0.561
1
113
I_DT39:DA-39_J
-0.483
0.133
-0.704
8.919
-22.758
2.445
1
118
I_DT44:DA-44_J
-0.195
0.12
0.48
-6.69
-15.193
-0.697
1
119
I_DT45:DA-45_J
-0.218
-0.314
0.628
-14.3
-9.247
-4.278
1
120
I_DT46:DA-46_J
-0.901
0.082
0.586
-14.79
-20.742
-3.184
1
121
I_DT47:DA-47_J
0.015
0.168
0.337
-16.091
-20.501
2.146
1
126
I_DT53:DA-53_J
0.41
0.126
-0.588
0.003
-17.524
1.082
1
128
I_DT55:DA-55_J
-0.063
0.219
0.62
5.554
-13.399
2.94
1
130
I_DT57:DA-57_J
-0.651
-0.148
1.172
-13.747
-13.479
0.803
1
136
I_DT63:DA-63_J
-0.01
-0.162
-0.011
-4.916
-8.81
-0.285
1
140
I_DT67:DA-67_J
0.626
-0.082
0.007
8.123
-11.002
4.639
1
142
I_DT69:DA-69_J
-0.458
-0.325
0.616
-3.22
-15.877
1.597
1
143
I_DT70:DA-70_J
-0.007
-0.068
0.203
-0.657
-13.669
0.223
1
146
I_DT73:DA-73_J
0.108
-0.356
-0.199
6.887
-16.421
4.381
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.