A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
Search for released structures

NDB ID: 5AVC  PDB ID: 5AVC 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA-73:DT73_J-0.354-0.230.05-2.8313.897-1.357
14I_DA-70:DT70_J0.3610.2060.2546.114-15.4639.279
15I_DA-69:DT69_J0.302-0.1980.2877.31-15.8740.544
17I_DA-67:DT67_J0.754-0.1050.3452.832-15.345-2.277
111I_DA-63:DT63_J0.455-0.2180.0491.97-7.383-9.842
117I_DA-57:DT57_J-0.05-0.0790.5948.708-23.8663.911
119I_DA-55:DT55_J-0.580.051-0.117-0.473-16.5740.735
121I_DA-53:DT53_J-0.44-0.110.231-7.768-13.093-6.705
124I_DA-50:DT50_J0.2930.299-0.529-16.571-23.5750.551
127I_DA-47:DT47_J-0.038-0.150.56124.971-25.531-1.165
128I_DA-46:DT46_J0.8920.040.40318.238-31.403-6.247
129I_DA-45:DT45_J-0.214-0.1030.0686.872-25.5064.506
130I_DA-44:DT44_J0.2860.0750.0072.045-12.8245.703
135I_DA-39:DT39_J-0.315-0.1580.091-6.506-18.886-1.544
141I_DA-33:DT33_J-0.6070.1710.51513.601-18.775.117
142I_DA-32:DT32_J0.542-0.1250.2867.859-20.1682.123
143I_DA-31:DT31_J-0.2070.2020.4572.416-15.0041.109
151I_DA-23:DT23_J-0.047-0.11-0.1-7.725-16.275.008
154I_DA-20:DT20_J-0.2870.327-0.508-14.771-11.5826.991
155I_DA-19:DT19_J0.450.222-0.411.731-5.47817.088
156I_DA-18:DT18_J-0.903-0.180.0514.927-28.2853.752
157I_DA-17:DT17_J-0.491-0.0820.375-5.473-33.2415.121
161I_DA-13:DT13_J-0.4110.0610.187-16.306-8.5633.686
167I_DA-7:DT7_J0.316-0.173-0.1143.573-12.6611.016
173I_DA-1:DT1_J0.253-0.1480.3991.781-9.964-1.997
174I_DA0:DT0_J0.942-0.310.385-2.801-10.9892.773
178I_DA4:DT-4_J0.6170.1040.3832.753-30.104-4.765
183I_DA9:DT-9_J0.043-0.0160.0555.208-17.1511.281
184I_DA10:DT-10_J0.167-0.104-0.644-2.794-14.8664.411
186I_DA12:DT-12_J0.3960.0590.5013.686-13.4454.067
196I_DA22:DT-22_J0.022-0.097-0.36-8.624-5.2260.026
1100I_DA26:DT-26_J0.8050.110.5913.021-32.91-0.962
1103I_DA29:DT-29_J-0.5940.01-0.567-18.855-19.87516.297
1110I_DA36:DT-36_J-0.766-0.3970.7147.315-9.95-3.337
1111I_DA37:DT-37_J0.44-0.1760.39713.048-10.674-0.422
1112I_DA38:DT-38_J0.258-0.305-0.177.675-9.961-1.035
1114I_DA40:DT-40_J-0.586-0.231-0.075-14.21-9.5362.813
1116I_DA42:DT-42_J-0.058-0.322-0.1912.543-16.67-0.133
1124I_DA51:DT-51_J-0.113-0.145-0.2530.022-16.825-3.105
1127I_DA54:DT-54_J-0.324-0.1440.866-0.342-3.4386.556
1133I_DA60:DT-60_J-0.4640.0870.4262.76-21.8935.231
1139I_DA66:DT-66_J-0.369-0.0050.313-1.63-9.9373.681
1141I_DA68:DT-68_J0.335-0.2270.192-12.34-7.961-3.938
1145I_DA72:DT-72_J0.053-0.0850.2883.167-15.4963.141
13I_DC-71:DG71_J0.792-0.118-0.83912.654-7.1166.703
19I_DC-65:DG65_J-0.6910.2930.378-3.993-14.61911.661
110I_DC-64:DG64_J-0.0450.0290.052-0.13-6.00.924
112I_DC-62:DG62_J0.6330.0180.1158.474-10.3485.761
113I_DC-61:DG61_J-0.3290.3080.25-2.333-14.96413.784
116I_DC-58:DG58_J0.486-0.006-0.0729.744-4.7482.923
122I_DC-52:DG52_J-0.143-0.214-0.5219.206-13.7841.384
125I_DC-49:DG49_J0.9730.1170.32.832-11.3497.57
126I_DC-48:DG48_J-0.0060.315-0.24516.849-12.71612.239
144I_DC-30:DG30_J-0.4270.191-0.38516.241-16.2771.98
147I_DC-27:DG27_J0.230.0590.208-5.266-15.4267.491
149I_DC-25:DG25_J0.235-0.039-0.488-8.37-0.2349.011
150I_DC-24:DG24_J0.5550.106-0.132-2.404-16.9212.529
153I_DC-21:DG21_J0.486-0.119-0.4944.539-27.29412.472
160I_DC-14:DG14_J-0.40.113-0.071-16.329-7.58810.613
166I_DC-8:DG8_J0.230.171-0.1123.998-11.8018.101
169I_DC-5:DG5_J-0.188-0.1630.314-2.888-3.5514.384
176I_DC2:DG-2_J-0.0990.00.273-6.182-11.8864.681
177I_DC3:DG-3_J0.239-0.1070.0386.988-8.7273.126
180I_DC6:DG-6_J-0.254-0.1640.591-1.156-33.197-1.394
185I_DC11:DG-11_J-0.364-0.085-0.0524.807-15.4176.929
189I_DC15:DG-15_J0.2890.0261.324-4.354-30.848-0.205
190I_DC16:DG-16_J0.103-0.1160.785-13.501-8.911-1.595
1102I_DC28:DG-28_J0.3120.0260.1256.178-28.7361.774
1108I_DC34:DG-34_J0.1750.4290.958-18.210.01110.766
1109I_DC35:DG-35_J0.262-0.0940.9754.773-9.694-0.46
1115I_DC41:DG-41_J-0.188-0.185-0.1654.637-1.0843.371
1117I_DC43:DG-43_J0.919-0.0520.0092.112-14.2892.132
1129I_DC56:DG-56_J-0.8630.5281.295-11.045-19.07414.854
1132I_DC59:DG-59_J0.5750.3990.4965.517-10.2529.397
115I_DG-59:DC59_J-0.95-0.020.0-13.063-5.396-0.097
118I_DG-56:DC56_J1.2770.0940.3418.429-16.9274.731
131I_DG-43:DC43_J-0.6140.230.03-5.706-8.5968.315
133I_DG-41:DC41_J-0.906-0.201-0.403-11.787-6.4726.759
139I_DG-35:DC35_J-1.025-0.2620.534-8.54-21.2130.552
140I_DG-34:DC34_J-0.637-0.0130.48312.85113.2476.696
146I_DG-28:DC28_J-0.225-0.0180.193.938-29.686-0.268
158I_DG-16:DC16_J-1.1130.020.3812.0772.70811.396
159I_DG-15:DC15_J-0.237-0.2461.335-1.817-33.765-2.535
163I_DG-11:DC11_J-0.4580.232-0.141-20.752-13.1895.394
168I_DG-6:DC6_J-0.195-0.2230.426-0.413-31.906-1.554
171I_DG-3:DC3_J-0.4910.0990.452-1.511-6.9216.545
172I_DG-2:DC2_J-0.0140.1140.2647.253-6.8597.301
179I_DG5:DC-5_J0.0-0.1160.252.269-4.6252.438
182I_DG8:DC-8_J0.0280.0710.4960.75-7.6317.628
188I_DG14:DC-14_J0.017-0.1210.2625.7642.3413.624
195I_DG21:DC-21_J-0.255-0.0730.0372.309-17.71311.744
198I_DG24:DC-24_J0.0120.1220.31910.671-17.6992.062
199I_DG25:DC-25_J0.022-0.23-0.1476.759-0.8564.312
1101I_DG27:DC-27_J-0.4640.0890.78.29-5.5866.968
1104I_DG30:DC-30_J0.3470.2310.356-5.068-8.82810.081
1122I_DG48:DC-48_J-0.0170.4310.165-8.055-6.39710.18
1123I_DG49:DC-49_J-0.6160.3630.3743.725-7.3296.075
1125I_DG52:DC-52_J0.427-0.45-0.186-4.453-18.464-3.709
1131I_DG58:DC-58_J-0.2550.0480.094-14.711-11.8873.018
1134I_DG61:DC-61_J0.0580.040.2789.434-16.3197.29
1135I_DG62:DC-62_J-0.268-0.05-0.191-10.77-15.385-0.923
1137I_DG64:DC-64_J-0.164-0.2070.0360.68-8.379-2.622
1138I_DG65:DC-65_J0.9360.21-0.4560.942-15.89311.068
1144I_DG71:DC-71_J-0.723-0.017-0.334-1.039-6.4038.256
12I_DT-72:DA72_J-0.294-0.078-0.3044.085-12.192.149
16I_DT-68:DA68_J-0.169-0.2380.04416.21-8.921-0.774
18I_DT-66:DA66_J0.481-0.0890.0750.369-13.697-0.369
114I_DT-60:DA60_J-0.131-0.1130.086-4.905-24.5265.159
120I_DT-54:DA54_J-0.1540.1870.2422.053-10.9215.322
123I_DT-51:DA51_J0.179-0.04-0.15411.335-25.2790.677
132I_DT-42:DA42_J0.0090.124-0.6783.087-13.5747.35
134I_DT-40:DA40_J-0.481-0.2090.2141.67-3.317-1.924
136I_DT-38:DA38_J0.009-0.0690.296-6.999-8.284.164
137I_DT-37:DA37_J-0.438-0.1170.899-17.248-11.1440.345
138I_DT-36:DA36_J-0.064-0.1180.99-13.259-11.5351.487
145I_DT-29:DA29_J-0.086-0.0640.0064.926-14.90213.206
148I_DT-26:DA26_J-0.518-0.0430.538-12.275-32.145-1.166
152I_DT-22:DA22_J0.370.391-0.1155.752-15.0656.299
162I_DT-12:DA12_J-0.351-0.1350.558-10.694-11.1162.685
164I_DT-10:DA10_J-0.356-0.1480.272-9.998-12.9923.745
165I_DT-9:DA9_J-0.215-0.0820.389-6.138-14.172.181
170I_DT-4:DA4_J-0.2140.0220.417-0.835-28.859-7.262
175I_DT1:DA-1_J0.216-0.1290.261-3.519-11.3861.941
181I_DT7:DA-7_J-0.157-0.177-0.008-9.544-13.11.64
187I_DT13:DA-13_J-0.305-0.0780.2994.925-12.4031.34
191I_DT17:DA-17_J-0.852-0.1590.266-14.535-24.661.817
192I_DT18:DA-18_J0.1310.205-0.263-1.022-24.4915.592
193I_DT19:DA-19_J0.176-0.096-0.5760.297-12.7949.951
194I_DT20:DA-20_J0.329-0.296-0.8220.914-15.3492.234
197I_DT23:DA-23_J-0.0860.083-0.09711.481-13.5923.427
1105I_DT31:DA-31_J0.3680.1430.121-7.627-15.71-0.224
1106I_DT32:DA-32_J-0.1160.0030.384-9.064-12.234.979
1107I_DT33:DA-33_J0.1730.2410.103-10.525-25.848-0.561
1113I_DT39:DA-39_J-0.4830.133-0.7048.919-22.7582.445
1118I_DT44:DA-44_J-0.1950.120.48-6.69-15.193-0.697
1119I_DT45:DA-45_J-0.218-0.3140.628-14.3-9.247-4.278
1120I_DT46:DA-46_J-0.9010.0820.586-14.79-20.742-3.184
1121I_DT47:DA-47_J0.0150.1680.337-16.091-20.5012.146
1126I_DT53:DA-53_J0.410.126-0.5880.003-17.5241.082
1128I_DT55:DA-55_J-0.0630.2190.625.554-13.3992.94
1130I_DT57:DA-57_J-0.651-0.1481.172-13.747-13.4790.803
1136I_DT63:DA-63_J-0.01-0.162-0.011-4.916-8.81-0.285
1140I_DT67:DA-67_J0.626-0.0820.0078.123-11.0024.639
1142I_DT69:DA-69_J-0.458-0.3250.616-3.22-15.8771.597
1143I_DT70:DA-70_J-0.007-0.0680.203-0.657-13.6690.223
1146I_DT73:DA-73_J0.108-0.356-0.1996.887-16.4214.381

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.