A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: 5AVC  PDB ID: 5AVC 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA-73DT-72:DA72DT73_JJ-0.629-0.693.2223.507-0.56232.374-1.1351.7193.15-1.004-6.26632.563
14II_DA-70DA-69:DT69DT70_JJ-0.7920.1493.258-3.0180.30236.2970.1950.8453.3120.4844.83336.419
15II_DA-69DT-68:DA68DT69_JJ0.592-0.6673.0711.833-4.00829.676-0.499-0.7823.162-7.771-3.55429.995
17II_DA-67DT-66:DA66DT67_JJ0.206-1.1473.3451.275-5.28535.325-1.069-0.1423.48-8.647-2.08735.728
111II_DA-63DC-62:DG62DT63_JJ0.86-0.6643.1280.0836.81932.068-2.277-1.5122.9312.172-0.14832.767
117II_DA-57DG-56:DC56DT57_JJ0.5970.2773.491-0.6590.76437.6510.323-1.0163.4851.1841.02237.664
119II_DA-55DT-54:DA54DT55_JJ0.159-0.6783.351-3.319-4.41235.424-0.446-0.7513.38-7.1965.41335.838
121II_DA-53DC-52:DG52DT53_JJ-0.092-0.6072.7856.6373.50525.926-2.0491.6142.5797.611-14.41326.973
124II_DA-50DC-49:DG49DT50_JJ0.491-0.1462.893-6.917-1.51532.545-0.035-1.8622.737-2.66412.16333.286
127II_DA-47DA-46:DT46DT47_JJ0.2580.2453.5661.209-3.55739.5140.812-0.2263.538-5.246-1.78339.685
128II_DA-46DA-45:DT45DT46_JJ0.893-0.3443.4483.829-1.64533.355-0.306-0.8733.539-2.852-6.63833.607
129II_DA-45DA-44:DT44DT45_JJ0.061-0.0043.331-1.056-1.68337.4260.218-0.2353.325-2.6211.64437.477
130II_DA-44DG-43:DC43DT44_JJ0.312-0.5713.521-2.5365.18131.271-2.048-1.0633.359.514.65631.786
135II_DA-39DT-38:DA38DT39_JJ0.541-0.5983.362-1.757-1.83535.886-0.7-1.1343.358-2.9742.84635.973
141II_DA-33DA-32:DT32DT33_JJ-0.1770.0013.3570.1293.95939.287-0.4770.2773.3415.87-0.19239.478
142II_DA-32DA-31:DT31DT32_JJ0.181-0.193.498-1.42110.51329.858-2.409-0.613.23619.642.65431.647
143II_DA-31DC-30:DG30DT31_JJ0.276-0.5252.8936.6862.45429.272-1.4560.6822.8334.768-12.98930.107
151II_DA-23DT-22:DA22DT23_JJ0.229-0.3143.038-0.3532.02630.919-0.949-0.4913.0093.7960.66130.985
154II_DA-20DA-19:DT19DT20_JJ0.3831.0242.9330.59221.823.5-2.213-0.5852.86543.394-1.17831.955
155II_DA-19DA-18:DT18DT19_JJ-0.7660.53.059-2.8544.29925.556-0.0220.9483.1649.5946.36826.063
156II_DA-18DA-17:DT17DT18_JJ-0.250.0173.485-0.9598.19937.862-1.0470.2523.4212.4561.45738.72
157II_DA-17DG-16:DC16DT17_JJ1.7741.1213.1461.62-8.03733.2913.086-2.7742.886-13.77-2.77634.258
161II_DA-13DT-12:DA12DT13_JJ-0.4-0.5013.241-2.889-2.2734.374-0.4920.2273.288-3.8284.87234.564
167II_DA-7DG-6:DC6DT7_JJ-0.9791.4293.486-5.197-8.82439.9333.0250.8073.21-12.677.46241.173
173II_DA-1DA0:DT0DT1_JJ-0.015-0.3943.436-0.6411.59235.554-0.888-0.0733.4152.6051.04835.594
174II_DA0DT1:DA-1DT0_JJ-0.053-0.9763.3061.8634.92128.753-2.9880.5033.099.806-3.71229.221
178II_DA4DG5:DC-5DT-4_JJ1.1260.6313.3081.988-2.77833.1121.572-1.633.306-4.858-3.47733.283
183II_DA9DA10:DT-10DT-9_JJ0.3560.1243.6193.28211.62632.53-1.796-0.0323.47719.917-5.62334.644
184II_DA10DC11:DG-11DT-10_JJ0.089-0.3333.109-3.4274.23629.657-1.454-0.8293.0058.1896.62430.142
186II_DA12DT13:DA-13DT-12_JJ0.131-0.6773.3362.3090.38727.643-1.5060.2943.3260.809-4.82227.74
196II_DA22DT23:DA-23DT-22_JJ-0.297-0.5232.8850.9720.15928.46-1.0960.82.870.324-1.97528.476
1100II_DA26DG27:DC-27DT-26_JJ1.5920.5143.1170.552-6.16530.4642.074-2.8722.986-11.582-1.03731.072
1103II_DA29DG30:DC-30DT-29_JJ-1.140.5442.912-15.3194.49537.6010.299-0.0063.1676.6222.56340.737
1110II_DA36DA37:DT-37DT-36_JJ0.319-0.1283.2771.7940.54937.786-0.268-0.2613.2860.847-2.76837.831
1111II_DA37DA38:DT-38DT-37_JJ-0.298-0.2473.3750.696-2.35536.036-0.0540.5823.378-3.801-1.12436.116
1112II_DA38DT39:DA-39DT-38_JJ-0.214-0.523.2093.6010.11531.772-0.9651.0253.1640.21-6.55131.971
1114II_DA40DC41:DG-41DT-40_JJ-0.147-0.4913.025-4.4542.14432.627-1.201-0.4392.9813.7897.87132.989
1116II_DA42DC43:DG-43DT-42_JJ0.371-0.6543.422-1.084-0.80536.186-0.933-0.7573.423-1.2951.74536.21
1124II_DA51DG52:DC-52DT-51_JJ0.10.2443.421-1.00410.9232.664-1.393-0.3363.32518.7681.72634.408
1127II_DA54DT55:DA-55DT-54_JJ-0.42-1.2463.3424.311-10.4334.462-0.4351.3263.485-17.047-7.04636.21
1133II_DA60DG61:DC-61DT-60_JJ0.5010.4823.304-1.4126.21433.076-0.202-1.13.31410.7912.45233.667
1139II_DA66DT67:DA-67DT-66_JJ0.166-0.6483.0634.283-0.65334.505-0.9910.3383.072-1.095-7.18634.767
1141II_DA68DT69:DA-69DT-68_JJ0.014-0.8533.131-1.416-4.82228.611-0.664-0.3333.224-9.6632.83829.04
1145II_DA72DT73:DA-73DT-72_JJ0.686-1.1293.1883.3797.39632.198-3.154-0.6642.91913.076-5.97433.183
13II_DC-71DA-70:DT70DG71_JJ-0.3270.5143.465-6.2159.17431.507-0.771-0.5593.47516.27811.02733.352
19II_DC-65DC-64:DG64DG65_JJ-0.2240.2363.1393.47710.34430.747-1.3260.9873.01618.783-6.31432.582
110II_DC-64DA-63:DT63DG64_JJ-0.8510.1853.312-3.4662.86536.522-0.1080.8653.384.555.50536.789
112II_DC-62DC-61:DG61DG62_JJ0.814-0.5073.376.1649.37329.195-2.782-0.3023.16417.788-11.69731.232
113II_DC-61DT-60:DA60DG61_JJ-0.960.7563.3780.959.73132.888-0.3441.7873.42816.733-1.63334.272
116II_DC-58DA-57:DT57DG58_JJ0.3382.4373.4790.528-13.63244.2044.229-0.3872.659-17.623-0.68246.161
122II_DC-52DT-51:DA51DG52_JJ0.150.1633.425-0.59710.84832.47-1.535-0.3553.30518.7581.03234.193
125II_DC-49DC-48:DG48DG49_JJ0.6350.0822.80210.9199.96125.229-1.7990.8892.69120.694-22.68429.179
126II_DC-48DA-47:DT47DG48_JJ-0.3752.7213.265-1.69-11.5642.414.620.3582.489-15.6272.28443.918
144II_DC-30DT-29:DA29DG30_JJ1.4990.163.5454.20412.62434.419-1.671-1.7323.53920.413-6.79836.828
147II_DC-27DT-26:DA26DG27_JJ-1.2820.3763.417-3.7990.45430.1470.621.633.5530.8687.26730.384
149II_DC-25DC-24:DG24DG25_JJ-1.2090.663.258-5.013-4.94235.4191.7711.2363.275-8.0258.14136.09
150II_DC-24DA-23:DT23DG24_JJ0.2360.6333.3291.61811.61335.626-0.618-0.1433.37218.377-2.5637.447
153II_DC-21DA-20:DT20DG21_JJ0.1970.7413.7421.83916.83424.634-2.8520.0863.52734.703-3.79229.819
160II_DC-14DA-13:DT13DG14_JJ-0.9290.9133.583-8.3493.41136.6960.9080.2073.7645.3213.02137.751
166II_DC-8DA-7:DT7DG8_JJ0.3050.9023.3631.6599.1836.5770.131-0.2433.49114.342-2.59237.708
169II_DC-5DT-4:DA4DG5_JJ-1.0620.733.36-0.216-6.18536.5031.991.6433.204-9.7880.34137.007
176II_DC2DC3:DG-3DG-2_JJ-0.0850.2553.0072.5438.84431.068-0.9960.572.9516.074-4.62232.37
177II_DC3DA4:DT-4DG-3_JJ-0.8181.7813.598-2.27-5.42444.4832.8630.853.404-7.1272.98344.851
180II_DC6DT7:DA-7DG-6_JJ1.1831.4083.6176.297-7.71943.4862.636-0.9253.461-10.259-8.36844.558
185II_DC11DA12:DT-12DG-11_JJ-0.4440.5723.416-3.3678.12837.854-0.20.2293.48612.3265.10638.826
189II_DC15DC16:DG-16DG-15_JJ0.351.493.8423.034-12.70242.1693.323-0.1483.298-17.167-4.144.057
190II_DC16DT17:DA-17DG-16_JJ-0.3271.4233.3323.064-9.83536.6853.3840.8762.835-15.26-4.75538.056
1102II_DC28DA29:DT-29DG-28_JJ1.4860.7713.8568.6749.68235.404-0.397-0.8774.15715.299-13.70637.643
1108II_DC34DC35:DG-35DG-34_JJ-1.3890.9472.969-0.668-2.26130.4842.22.5142.922-4.2931.26830.573
1109II_DC35DA36:DT-36DG-35_JJ0.1731.873.4093.883-20.06241.2384.0170.0912.315-26.61-5.1545.825
1115II_DC41DA42:DT-42DG-41_JJ-0.431-0.1183.3640.8938.98233.743-1.5910.8573.21615.139-1.50634.895
1117II_DC43DT44:DA-44DG-43_JJ0.061-0.7943.420.2812.65232.025-1.927-0.0583.3454.796-0.50832.133
1129II_DC56DT57:DA-57DG-56_JJ-1.1250.1313.358-0.9291.96333.561-0.1051.7873.3893.3961.60733.629
1132II_DC59DA60:DT-60DG-59_JJ-0.6251.8343.365-0.299-4.33840.7713.0930.8593.167-6.2050.42740.992
115II_DG-59DC-58:DG58DC59_JJ-0.020.312.6860.7595.49932.181-0.240.1442.6999.828-1.35632.644
118II_DG-56DA-55:DT55DC56_JJ-0.04-0.2013.2672.401-2.20432.8960.020.4763.263-3.879-4.22833.053
131II_DG-43DT-42:DA42DC43_JJ-0.515-0.2383.0814.8633.0335.408-0.7891.4842.9574.941-7.93135.854
133II_DG-41DT-40:DA40DC41_JJ-0.623-0.5373.04-5.5164.82132.132-1.7150.222.9928.5729.80832.935
139II_DG-35DG-34:DC34DC35_JJ1.5071.1532.916-2.637-5.16932.2882.794-3.0542.577-9.2014.69432.791
140II_DG-34DA-33:DT33DC34_JJ-1.1040.5243.4250.3524.70536.0650.1481.8213.4547.56-0.56536.362
146II_DG-28DC-27:DG27DC28_JJ1.1061.23.6184.794-1.9744.3471.782-0.9663.659-2.599-6.32644.634
158II_DG-16DG-15:DC15DC16_JJ-0.9811.7154.097-4.783-11.10343.2313.4690.7623.655-14.736.34544.811
159II_DG-15DC-14:DG14DC15_JJ1.3040.7233.92310.264-9.06137.5782.344-0.4563.867-13.529-15.32439.91
163II_DG-11DT-10:DA10DC11_JJ-0.189-0.2413.106-3.7413.70330.162-1.152-0.3443.0567.0497.1230.607
168II_DG-6DC-5:DG5DC6_JJ1.2310.923.462.038-6.37737.6422.245-1.6123.326-9.789-3.12938.211
171II_DG-3DG-2:DC2DC3_JJ0.3350.4683.1970.8324.87131.698-0.02-0.4583.2398.851-1.51232.072
172II_DG-2DA-1:DT1DC2_JJ-0.852-0.1613.391-4.0327.18535.392-1.3110.7773.36811.6256.52336.308
179II_DG5DC6:DG-6DC-5_JJ-1.1981.0023.549-4.38-7.94237.292.5951.2353.388-12.2016.72938.339
182II_DG8DA9:DT-9DC-8_JJ-0.6740.0173.2682.5155.11933.012-0.8081.583.1768.925-4.38433.488
188II_DG14DC15:DG-15DC-14_JJ-1.370.5733.946-6.705-13.04939.1382.481.0633.753-18.79.60941.697
195II_DG21DA22:DT-22DC-21_JJ-0.769-0.4153.462-0.9545.54935.123-1.5311.1143.3789.1221.56835.557
198II_DG24DG25:DC-25DC-24_JJ0.9410.6563.4544.6450.04636.4471.034-0.8123.5440.073-7.38936.732
199II_DG25DA26:DT-26DC-25_JJ-1.3851.1463.573-6.502-6.10943.4212.1461.1713.549-8.1558.6844.285
1101II_DG27DC28:DG-28DC-27_JJ-0.9630.6823.472.014-4.06940.3281.4571.6233.339-5.879-2.91140.572
1104II_DG30DT31:DA-31DC-30_JJ-0.773-0.6013.3261.638.85128.802-2.9331.8142.96717.269-3.18130.147
1122II_DG48DG49:DC-49DC-48_JJ-0.4250.0172.972-4.2956.71727.878-1.33-0.0242.92713.5938.69328.974
1123II_DG49DA51:DT-51DC-49_JJ-0.512-1.2876.6222.40615.28765.351-2.3580.6516.20313.955-2.19666.96
1125II_DG52DT53:DA-53DC-52_JJ0.225-1.153.1922.1666.09827.766-3.6490.0082.88812.493-4.43728.496
1131II_DG58DC59:DG-59DC-58_JJ0.5480.4062.867-4.1374.34729.4370.003-1.8012.7968.4458.03630.029
1134II_DG61DG62:DC-62DC-61_JJ-0.434-0.4253.58-0.8415.92133.405-2.9820.5643.08125.9411.36936.917
1135II_DG62DT63:DA-63DC-62_JJ-0.53-0.7513.191-2.8942.25130.842-1.8230.4493.1654.2145.41731.054
1137II_DG64DG65:DC-65DC-64_JJ0.9180.5163.4335.3628.76736.11-0.448-0.6633.55413.803-8.44237.497
1138II_DG65DA66:DT-66DC-65_JJ-0.748-0.1143.173-10.205-1.50833.7060.036-0.293.257-2.52717.10835.205
1144II_DG71DA72:DT-72DC-71_JJ-0.7680.0983.322-8.426-4.70239.2460.6930.1263.376-6.87512.3240.369
12II_DT-72DC-71:DG71DA72_JJ0.8560.4813.1155.5834.54938.4940.183-0.6223.2376.827-8.37839.137
16II_DT-68DA-67:DT67DA68_JJ-0.154-0.233.644-0.885-3.3744.010.0470.1123.654-4.4881.17844.141
18II_DT-66DC-65:DG65DA66_JJ1.163-0.2573.2982.12-4.77433.5660.343-1.6443.366-8.205-3.64333.959
114II_DT-60DG-59:DC59DA60_JJ0.2541.4083.592-0.354-2.50840.7022.321-0.4063.501-3.6020.50840.777
120II_DT-54DA-53:DT53DA54_JJ-0.295-1.1353.2790.9968.34233.165-3.1980.6532.90614.331-1.71234.184
123II_DT-51DA-50:DT50DA51_JJ-0.045-0.3233.9653.00620.74132.647-3.5440.5113.19633.003-4.78438.64
132II_DT-42DG-41:DC41DA42_JJ0.4160.2463.69-4.08811.80427.964-2.195-1.7113.4223.0277.97530.576
134II_DT-40DA-39:DT39DA40_JJ0.177-0.453.5444.9995.84535.09-1.630.4833.429.553-8.1735.897
136II_DT-38DT-37:DA37DA38_JJ0.095-0.4373.448-0.703-2.42336.032-0.343-0.2593.466-3.9111.13536.117
137II_DT-37DT-36:DA36DA37_JJ-0.324-0.3123.171-1.2042.78232.561-1.020.3753.1444.9472.14132.698
138II_DT-36DG-35:DC35DA36_JJ-0.8762.3863.360.103-23.19845.5924.1931.0262.0-27.912-0.12450.872
145II_DT-29DG-28:DC28DA29_JJ-1.4560.8333.281-2.4812.8136.0420.9341.9843.4234.5273.99636.23
148II_DT-26DC-25:DG25DA26_JJ1.5711.3923.2447.826-2.76245.1672.029-1.3253.371-3.56-10.08845.884
152II_DT-22DC-21:DG21DA22_JJ0.1660.4493.117.0487.24433.57-0.3130.7553.10812.203-11.87235.017
162II_DT-12DG-11:DC11DA12_JJ0.1690.1193.4114.32310.78836.404-1.2540.3163.31116.751-6.71238.154
164II_DT-10DT-9:DA9DA10_JJ-0.326-0.053.243-1.7097.65432.352-1.3570.2853.16113.4913.01233.264
165II_DT-9DC-8:DG8DA9_JJ0.5580.2213.0624.7455.38833.731-0.426-0.2393.1079.157-8.06434.465
170II_DT-4DG-3:DC3DA4_JJ1.1031.4053.4161.561-3.95441.4642.405-1.3813.312-5.567-2.19841.671
175II_DT1DC2:DG-2DA-1_JJ0.345-0.2673.2294.4895.33432.215-1.3690.1473.1639.474-7.97332.941
181II_DT7DG8:DC-8DA-7_JJ-0.3180.8533.074-6.4137.35836.090.385-0.3293.18911.61610.12537.344
187II_DT13DG14:DC-14DA-13_JJ1.0390.443.3711.6926.27436.384-0.194-1.43.449.95-2.68336.941
191II_DT17DT18:DA-18DA-17_JJ0.1710.282.9120.8926.91836.502-0.391-0.1622.91810.921-1.40837.14
192II_DT18DT19:DA-19DA-18_JJ0.6450.5013.3372.5029.4431.51-0.806-0.693.38316.882-4.47532.952
193II_DT19DT20:DA-20DA-19_JJ-0.2880.43.3671.43614.06227.877-2.0930.8253.18127.095-2.76631.192
194II_DT20DG21:DC-21DA-20_JJ0.769-0.243.299-6.00222.12721.515-4.465-2.5141.96745.71912.40131.342
197II_DT23DG24:DC-24DA-23_JJ0.0890.6523.399-1.226.1535.9570.143-0.3213.4559.871.95736.482
1105II_DT31DT32:DA-32DA-31_JJ-0.03-0.33.3151.0993.929.139-1.4330.2963.2457.704-2.17229.413
1106II_DT32DT33:DA-33DA-32_JJ-0.146-0.1373.2663.2565.51539.567-0.8270.5833.1978.082-4.77140.061
1107II_DT33DC34:DG-34DA-33_JJ1.5210.5693.64-0.7782.80838.0820.475-2.4353.6414.2951.19138.189
1113II_DT39DA40:DT-40DA-39_JJ-0.043-0.1393.891-8.60613.15634.612-2.218-1.2443.52520.83513.62837.915
1118II_DT44DT45:DA-45DA-44_JJ-0.006-0.3223.5190.47-4.82236.2580.2050.0793.532-7.706-0.75236.569
1119II_DT45DT46:DA-46DA-45_JJ-0.303-0.3783.1461.957-8.65334.3920.6150.7763.126-14.341-3.24435.484
1120II_DT46DT47:DA-47DA-46_JJ-0.0060.1963.3153.922-4.0239.2130.7660.4733.265-5.952-5.80839.598
1121II_DT47DG48:DC-48DA-47_JJ0.5932.1693.3190.255-9.63840.1454.057-0.8172.753-13.8-0.36641.24
1126II_DT53DA54:DT-54DA-53_JJ0.807-0.2463.084-9.126.57331.111-1.438-2.8152.64511.78316.34933.033
1128II_DT55DC56:DG-56DA-55_JJ1.089-0.7373.4121.262-0.75833.506-1.147-1.673.465-1.315-2.18833.538
1130II_DT57DG58:DC-58DA-57_JJ-0.5742.6983.4233.012-13.76948.9954.0460.8672.588-16.218-3.54850.862
1136II_DT63DG64:DC-64DA-63_JJ0.2520.0053.3161.0038.78230.834-1.599-0.2733.20316.107-1.8432.046
1140II_DT67DA68:DT-68DA-67_JJ-0.6720.073.857-4.569-6.71340.8510.9440.3723.849-9.5046.46941.616
1142II_DT69DT70:DA-70DA-69_JJ0.38-0.2813.1263.9211.08238.404-0.554-0.113.1391.639-5.94138.61
1143II_DT70DG71:DC-71DA-70_JJ1.0110.3013.3586.6977.49229.639-0.965-0.5143.4714.144-12.64231.26

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.