A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
Search for released structures

NDB ID: 5AWH  PDB ID: 5AWH 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12CC_A3C4:DG15DT16_DD-0.433-0.753.0580.807-2.78236.476-0.8350.7943.095-4.436-1.28736.587
14CC_A5A6:DT13DT14_DD-0.042-0.5943.2192.9263.90930.874-1.8230.6173.1057.286-5.45431.248
15CC_A6C7:DG12DT13_DD0.926-0.8933.397-0.46611.24630.446-3.563-1.7412.88120.5520.85232.414
19CC_A10C11:DG8DT9_DD0.233-1.0193.11-1.9247.92134.037-2.79-0.6542.79313.2963.22934.971
112CC_A13C14:DG5DT6_DD-0.96-1.0373.2730.6390.67734.192-1.871.7333.2351.152-1.08634.204
13CC_C4A5:DT14DG15_DD0.9-1.0793.5785.09111.17330.16-4.003-0.6623.10220.44-9.31332.51
16CC_C7C8:DG11DG12_DD0.211-0.8443.475.0218.30535.172-2.5450.3863.19513.431-8.12136.445
17CC_C8U9:DA10DG11_DD-0.056-0.4083.1331.4373.24727.406-1.6050.4493.0586.816-3.01727.631
110CC_C11U12:DA7DG8_DD1.913-0.9275.6329.853-40.24824.0355.446-0.7554.065-59.414-14.54447.636
113CC_C14C15:DG4DG5_DD0.265-0.6373.2181.0748.61933.339-2.369-0.2872.97314.715-1.83334.42
114CC_C15U16:DA3DG4_DD-0.072-1.0773.3273.9297.61328.986-3.5760.9172.92214.806-7.64130.199
116CC_C17G18:DC1DG2_DD0.756-0.4563.346.68412.3829.344-3.035-0.1523.00722.855-12.33932.476
11CC_U2A3:DT16DA17_DD1.453-1.1793.3355.5442.22932.67-2.453-1.5733.4423.921-9.75433.198
18CC_U9A10:DT9DA10_DD0.268-0.7353.3234.899.63533.705-2.6230.2753.01416.11-8.17735.346
111CC_U12A13:DT6DA7_DD0.703-1.2442.9197.2224.10125.068-3.7020.1812.7759.135-16.08526.387
115CC_U16C17:DG2DA3_DD0.898-0.5033.2887.2861.84334.957-1.094-0.383.3713.025-11.95935.731
118EE_A3C4:DG15DT16_FF-0.397-0.6653.1741.967-1.64338.545-0.8090.8363.175-2.486-2.97638.627
120EE_A5A6:DT13DT14_FF0.061-0.4613.095-1.0820.91529.5-1.087-0.3363.0761.7952.12329.534
121EE_A6C7:DG12DT13_FF0.935-0.873.3642.16211.04130.105-3.546-1.3042.9320.383-3.99132.093
125EE_A10C11:DG8DT9_FF-0.142-1.1223.353-2.1633.78835.842-2.352-0.0793.2246.1273.49936.098
128EE_A13C14:DG5DT6_FF-0.87-1.1113.1640.449-0.0933.034-1.9391.6043.156-0.158-0.7933.037
119EE_C4A5:DT14DG15_FF0.745-1.0833.6265.54714.81730.133-4.369-0.3342.88626.341-9.86233.949
122EE_C7C8:DG11DG12_FF0.197-0.8673.4723.9159.42334.772-2.7650.2523.14215.362-6.38236.193
123EE_C8U9:DA10DG11_FF-0.056-0.523.118-0.0833.0727.912-1.7540.0973.0446.3410.17128.077
126EE_C11U12:DA7DG8_FF1.31-0.8816.03613.834-48.53925.8565.1280.343.924-62.133-17.70856.32
129EE_C14C15:DG4DG5_FF0.271-0.6043.291-0.4567.20434.686-2.04-0.5123.10311.9230.75535.406
130EE_C15U16:DA3DG4_FF-0.041-1.0483.3623.4816.75929.74-3.3020.7573.03112.905-6.64630.675
132EE_C17G18:DC1DG2_FF0.426-1.5172.626-6.55414.49632.32-3.906-1.3461.69924.29210.98235.929
117EE_U2A3:DT16DA17_FF1.317-1.0863.315.6830.41431.889-2.024-1.3143.4730.747-10.24232.381
124EE_U9A10:DT9DA10_FF0.173-1.0233.1210.35413.03532.621-3.458-0.2392.54222.135-0.60135.065
127EE_U12A13:DT6DA7_FF0.929-1.3432.7595.9379.83725.317-4.7-0.7892.24721.113-12.74227.764
131EE_U16C17:DG2DA3_FF0.72-0.6493.1845.5211.17834.541-1.255-0.3763.2331.967-9.22134.985

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.