A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 5B24  PDB ID: 5B24 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT290_J0.688-0.439-1.217-19.4456.957-7.82
14I_DA4:DT287_J-0.1810.0110.081-0.093-9.887-0.335
15I_DA5:DT286_J0.184-0.117-0.32-4.432-18.568.936
17I_DA7:DT284_J0.121-0.102-0.057-5.368-12.2113.041
111I_DA11:DT280_J-0.285-0.288-0.2410.4628.014-11.511
117I_DA17:DT274_J0.1450.1150.1335.762-10.7353.858
119I_DA19:DT272_J0.3080.033-0.242-4.709-18.7141.472
124I_DA24:DT267_J0.238-0.0740.025-4.66-12.018-6.073
127I_DA27:DT264_J0.017-0.043-0.255-18.016-17.867-1.519
128I_DA28:DT263_J-0.235-0.0150.9610.418-12.3867.93
133I_DA35:DT257_J0.069-0.094-0.69-9.414-9.6520.095
139I_DA41:DT251_J-0.297-0.115-0.29-8.667-8.439-4.165
140I_DA42:DT250_J0.0970.091-0.372-5.121-4.566-5.808
141I_DA43:DT249_J-0.01-0.190.1592.458-0.5733.82
149I_DA51:DT241_J-0.7880.04-0.288-11.251-10.58614.035
152I_DA54:DT238_J-0.176-0.213-0.749-1.791-4.6232.655
153I_DA55:DT237_J-0.153-0.31-0.3980.513-10.482-2.89
154I_DA56:DT236_J-0.021-0.058-0.30714.011-17.6850.07
155I_DA57:DT235_J0.25-0.145-0.3281.313-29.5720.678
159I_DA61:DT231_J-0.39-0.1520.314-8.842-11.9055.829
165I_DA67:DT225_J0.148-0.0350.3080.533-27.237-1.157
170I_DA72:DT220_J0.032-0.0980.496-1.331-6.912-2.322
171I_DA73:DT219_J0.424-0.2370.3471.099-1.5141.841
175I_DA77:DT215_J0.065-0.042-0.492-12.32-35.261-6.779
180I_DA82:DT210_J0.334-0.0170.451-5.383-1.8544.098
181I_DA83:DT209_J0.033-0.2450.098-3.7340.3974.066
183I_DA85:DT207_J-0.088-0.1020.309-0.907-8.5391.511
193I_DA95:DT197_J-0.10.07-0.357-3.1365.6772.273
197I_DA99:DT193_J0.1150.014-0.218-7.204-34.804-2.285
1100I_DA102:DT190_J-0.3260.049-0.38-10.265-13.20913.589
1106I_DA109:DT183_J-0.03-0.1550.125.11-11.9022.575
1107I_DA110:DT182_J0.233-0.019-0.618-3.182-10.9221.704
1108I_DA111:DT181_J0.41-0.05-0.724-8.527-8.8275.087
1110I_DA113:DT179_J-0.464-0.1310.253-5.907-2.9562.344
1112I_DA115:DT177_J-0.24-0.367-0.897-4.053-12.5187.65
1119I_DA123:DT168_J0.1240.2190.40813.452-11.140.569
1121I_DA125:DT166_J0.032-0.152-0.788-4.288-18.2160.569
1122I_DA126:DT165_J0.731-0.039-0.342-10.627-22.3373.109
1132I_DA138:DT153_J0.0470.009-0.2030.844-18.521-4.853
1134I_DA140:DT151_J1.3050.303-0.026-7.227-22.26-4.767
1138I_DA144:DT147_J0.3030.2930.6045.124-10.146-0.992
13I_DC3:DG288_J0.024-0.053-0.7024.984-8.0446.346
19I_DC9:DG282_J-0.5360.514-0.223-5.758-16.741-0.605
110I_DC10:DG281_J0.1410.326-0.214-3.409-5.12910.076
112I_DC12:DG279_J-0.153-0.064-0.096.2983.546-5.875
113I_DC13:DG278_J0.0280.2290.483-4.0090.1878.789
116I_DC16:DG275_J0.481-0.329-0.41814.537-18.821-2.6
122I_DC22:DG269_J0.234-0.117-0.025-7.935-14.997-4.316
125I_DC25:DG266_J-0.0250.0090.461-11.92-9.416-0.408
126I_DC26:DG265_J0.267-0.1350.965-10.533-13.9393.363
142I_DC44:DG248_J0.221-0.0640.1388.988-1.7419.098
145I_DC47:DG245_J-0.3750.0980.475-9.015-30.087-6.271
147I_DC49:DG243_J0.3140.1350.018-3.284-16.4578.515
148I_DC50:DG242_J-0.1550.3460.207-5.902-12.22910.374
151I_DC53:DG239_J0.157-0.045-0.4525.266-6.3852.008
158I_DC60:DG232_J0.256-0.078-0.158-2.13-7.3052.896
164I_DC66:DG226_J-0.2930.3030.036-0.3192.1939.523
167I_DC69:DG223_J0.1190.0360.0395.03-22.7722.693
174I_DC76:DG216_J0.149-0.1110.766-5.4150.9154.581
177I_DC79:DG213_J0.298-0.0990.727-3.509-21.067-3.949
182I_DC84:DG208_J0.264-0.126-0.35910.966-4.3790.396
186I_DC88:DG204_J0.122-0.2440.59-7.602-25.003-6.979
187I_DC89:DG203_J-0.025-0.050.325-9.213-9.089-3.024
199I_DC101:DG191_J0.141-0.0150.26711.506-20.2426.729
1104I_DC107:DG185_J-0.2240.122-0.229-3.10610.0063.855
1105I_DC108:DG184_J-0.1360.2160.1596.149-17.537-7.018
1111I_DC114:DG178_J0.0520.058-0.0184.669-0.271-0.65
1113I_DC116:DG176_J0.4880.186-0.51116.392-16.93512.938
1124I_DC128:DG163_J-0.3070.210.243-8.777-17.0713.225
1126I_DC131:DG160_J-0.453-0.0150.44-4.659-22.8450.86
115I_DG15:DC276_J-0.50.095-0.068-2.417-16.7493.146
118I_DG18:DC273_J-0.0430.3740.1314.97-12.86714.767
129I_DG31:DC261_J-0.5120.078-1.016-31.105-19.9273.957
131I_DG33:DC259_J-0.089-0.0110.2763.911-1.1991.82
137I_DG39:DC253_J-0.1820.051-0.274-4.855-5.526-0.441
138I_DG40:DC252_J-0.2850.0730.4240.888-15.515-1.841
144I_DG46:DC246_J-0.4140.205-0.172.095-13.999.781
156I_DG58:DC234_J-0.185-0.163-0.249-5.961-18.2450.8
157I_DG59:DC233_J-0.3750.074-0.179-9.165-22.6379.313
161I_DG63:DC229_J-0.118-0.2250.422-5.3165.6224.902
166I_DG68:DC224_J-0.192-0.077-0.2384.6-5.9773.885
169I_DG71:DC221_J-0.304-0.0130.262-2.7-4.7194.777
176I_DG78:DC214_J0.132-0.0050.172-5.413-3.88210.198
179I_DG81:DC211_J-0.1350.0830.949-0.211.95210.847
185I_DG87:DC205_J-0.191-0.18-0.767-7.827-2.6345.766
192I_DG94:DC198_J-0.3240.151-0.533-8.08-8.2416.37
195I_DG97:DC195_J-0.084-0.0390.068.545-11.7862.861
196I_DG98:DC194_J-0.124-0.096-0.5830.3-9.08.364
198I_DG100:DC192_J-0.0210.2730.1617.3371.615.219
1116I_DG120:DC171_J-0.085-0.3410.8439.877-7.466-1.708
1117I_DG121:DC170_J0.5770.3120.2746.927-6.531-5.253
1120I_DG124:DC167_J0.0760.04-0.606-3.892-15.164-4.127
1125I_DG130:DC161_J-0.461-0.088-0.63-12.991-13.0979.219
1127I_DG133:DC158_J-0.141-0.101-0.21-1.0853.5280.984
1128I_DG134:DC157_J-0.064-0.10.289-5.6880.5625.504
1130I_DG136:DC155_J-0.407-0.036-0.346-1.511-24.35411.022
1131I_DG137:DC154_J-0.3030.013-0.944-4.953-10.9852.54
1137I_DG143:DC148_J-0.3720.040.0563.646-12.3947.607
12I_DT2:DA289_J-0.023-0.307-0.951-4.05-6.845-5.203
16I_DT6:DA285_J0.085-0.1340.0524.977-6.3211.779
18I_DT8:DA283_J-0.126-0.066-0.305-6.652-16.18.439
114I_DT14:DA277_J0.721-0.0210.44912.569-15.4561.717
120I_DT20:DA271_J-0.752-0.095-0.44-4.056-27.3412.036
121I_DT21:DA270_J-0.105-0.011-0.504-7.496-17.653-0.785
123I_DT23:DA268_J0.3580.237-0.134-6.18-8.7227.733
130I_DT32:DA260_J0.012-0.052-0.667-2.957-2.435-0.925
132I_DT34:DA258_J0.045-0.2650.1618.7730.208-7.961
134I_DT36:DA256_J-0.4460.064-0.4752.237-9.4391.628
135I_DT37:DA255_J-0.486-0.044-0.263-0.503-18.5842.041
136I_DT38:DA254_J-0.075-0.145-0.432-0.525-30.684-0.854
143I_DT45:DA247_J-0.2140.1010.6313.517-19.226-7.998
146I_DT48:DA244_J-0.3420.33-0.016-2.451-12.3557.116
150I_DT52:DA240_J-0.2630.112-0.1480.85-3.007-19.275
160I_DT62:DA230_J0.096-0.1090.082-4.372-9.91-3.904
162I_DT64:DA228_J-0.051-0.0430.422-4.021-6.9120.687
163I_DT65:DA227_J-0.34-0.0960.3861.489-2.4450.145
168I_DT70:DA222_J0.022-0.1840.157-3.877-17.7960.158
172I_DT74:DA218_J-0.183-0.0130.407-1.725-4.681.665
173I_DT75:DA217_J-0.295-0.2170.747-6.016-3.4853.078
178I_DT80:DA212_J-0.509-0.1390.411-0.678-4.5874.77
184I_DT86:DA206_J0.278-0.2110.3574.74-3.5645.089
188I_DT90:DA202_J-0.428-0.0320.266-13.479-29.7033.011
189I_DT91:DA201_J-0.180.024-0.067-18.958-22.640.256
190I_DT92:DA200_J-0.2390.148-0.194-12.343-6.9388.639
191I_DT93:DA199_J0.176-0.262-0.289-1.525-2.4780.222
194I_DT96:DA196_J0.162-0.1030.4357.811-0.7263.386
1101I_DT104:DA188_J-0.306-0.0760.5855.182-2.857-0.993
1102I_DT105:DA187_J-0.268-0.0520.6246.82-7.888-8.453
1103I_DT106:DA186_J-0.38-0.1140.4472.145-10.841-7.544
1109I_DT112:DA180_J-0.483-0.17-0.34-7.362-10.2973.484
1114I_DT118:DA173_J-0.208-0.2370.29-15.052-20.4430.038
1115I_DT119:DA172_J-0.052-0.1850.2-9.289-24.17-1.381
1118I_DT122:DA169_J-0.103-0.011-0.40613.692-4.528-6.28
1123I_DT127:DA164_J-0.929-0.0160.309-12.741-21.482-3.374
1129I_DT135:DA156_J0.1020.0560.2823.089-0.892-4.749
1133I_DT139:DA152_J-0.4280.039-0.165-5.125-14.844-6.227
1135I_DT141:DA150_J-0.0260.0950.0010.179-15.9936.323
1136I_DT142:DA149_J0.5480.1310.0348.923-14.3789.909
1139I_DT145:DA146_J-1.5350.6530.11318.201-3.388-25.266

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.