A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
Search for released structures

NDB ID: 5B24  PDB ID: 5B24 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA1DT2:DA289DT290_JJ0.176-0.6122.92-0.8555.034.065-1.719-0.4152.88.4761.44934.429
14II_DA4DA5:DT286DT287_JJ-0.3790.0613.3841.2424.38540.715-0.4080.6823.366.278-1.77840.959
15II_DA5DT6:DA285DT286_JJ0.274-0.1913.112-5.387-5.86230.5250.686-1.4583.005-10.90310.01931.523
17II_DA7DT8:DA283DT284_JJ-0.414-0.7133.2022.449-2.27531.771-0.8911.1883.204-4.141-4.45831.942
111II_DA11DC12:DG279DT280_JJ0.212-1.1373.378-5.4143.04732.778-2.493-1.283.1885.3399.48833.346
117II_DA17DG18:DC273DT274_JJ0.9010.0743.268-1.6559.33429.496-1.661-2.0073.09317.7643.1530.949
119II_DA19DT20:DA271DT272_JJ-0.42-0.4943.1381.187-0.17830.223-0.9121.0363.122-0.341-2.27530.246
124II_DA24DC25:DG266DT267_JJ0.306-0.0023.447-2.0080.38931.493-0.08-0.9543.4210.7163.69531.558
127II_DA27DA28:DT263DT264_JJ0.3560.1442.545-9.784-5.2832.9180.858-1.7382.299-9.00416.68334.696
132II_DA35DT36:DA256DT257_JJ0.487-0.8942.98-0.1883.77531.454-2.261-0.9242.8536.9320.34631.675
138II_DA41DA42:DT250DT251_JJ0.2330.093.253-4.05411.05132.316-1.573-1.0283.06819.0837.034.339
139II_DA42DA43:DT249DT250_JJ0.312-0.3182.994-4.5934.26232.602-1.203-1.2432.8617.5068.08933.182
140II_DA43DC44:DG248DT249_JJ0.803-0.6023.4664.3065.1831.191-2.096-0.6293.4029.496-7.89431.892
148II_DA51DT52:DA240DT241_JJ-1.3130.2313.258-5.5311.80133.6190.0991.3353.4323.0849.47434.105
151II_DA54DA55:DT237DT238_JJ-0.6170.3523.312-1.989.70827.158-1.5380.7793.27719.8544.04928.877
152II_DA55DA56:DT236DT237_JJ-0.0590.0673.0943.9159.20936.966-0.9960.5583.00314.207-6.0438.25
153II_DA56DA57:DT235DT236_JJ-0.280.853.7140.86-4.29144.2151.5710.463.615-5.684-1.13944.42
154II_DA57DG58:DC234DT235_JJ0.9541.6563.6240.629-13.9734.664.475-1.4082.79-22.355-1.00737.294
158II_DA61DT62:DA230DT231_JJ-0.465-0.973.1411.4554.53532.126-2.481.0712.9568.139-2.61232.468
164II_DA67DG68:DC224DT225_JJ0.9241.1143.2961.493-1.49734.4952.108-1.3233.282-2.522-2.51534.558
169II_DA72DA73:DT219DT220_JJ-0.025-0.5863.287-0.5445.10935.563-1.675-0.0363.1758.3110.88535.921
170II_DA73DT74:DA218DT219_JJ0.114-1.1693.437-0.3981.90527.94-2.883-0.3343.3493.9380.82328.006
174II_DA77DG78:DC214DT215_JJ1.5831.0283.005-2.481-7.43636.6322.455-2.7522.644-11.6673.89237.434
179II_DA82DA83:DT209DT210_JJ-0.201-0.353.3170.3373.74331.34-1.3440.4323.2526.898-0.62131.559
180II_DA83DC84:DG208DT209_JJ0.063-0.1922.9334.1110.12631.955-0.3670.5452.9170.228-7.42932.212
182II_DA85DT86:DA206DT207_JJ0.181-0.6543.216-0.8162.07334.344-1.421-0.433.1673.5051.38134.414
192II_DA95DT96:DA196DT197_JJ-0.264-0.6923.256-3.6644.030.044-2.1-0.2173.1497.6396.99530.518
196II_DA99DG100:DC192DT193_JJ1.6811.7262.822-2.541-4.40738.942.999-2.752.509-6.5773.79239.258
199II_DA102DT104:DA188DT190_JJ-0.863-0.6195.876-10.98916.07964.05-1.716-0.0025.66614.80510.11866.643
1105II_DA109DA110:DT182DT183_JJ-0.055-0.1963.5251.6645.35231.68-1.3810.4193.4399.708-3.01832.16
1106II_DA110DA111:DT181DT182_JJ-0.5960.4623.246-4.8125.21438.4480.0550.3053.3267.8377.23239.073
1107II_DA111DT112:DA180DT181_JJ-0.431-0.7973.54-7.006-7.40830.4720.058-0.6393.637-13.62312.88532.094
1109II_DA113DC114:DG178DT179_JJ-0.452-0.1323.0091.6893.00232.402-0.7141.0762.9585.36-3.01532.58
1111II_DA115DC116:DG176DT177_JJ0.6380.3712.9261.4023.03536.1520.212-0.8482.9684.878-2.25436.301
1117II_DA123DG124:DC167DT168_JJ-0.39-0.7813.994-0.0932.34836.135-1.6570.6123.9393.7810.1536.208
1119II_DA125DA126:DT165DT166_JJ-0.5350.2273.425-2.1750.06742.6740.3050.5053.4470.0922.98742.727
1120II_DA126DT127:DA164DT165_JJ0.083-0.8613.184-2.562-4.02227.941-0.839-0.7563.253-8.2545.25828.337
1129II_DA138DT139:DA152DT153_JJ-0.36-1.5943.47-4.415-6.56236.389-1.529-0.0873.708-10.3576.96937.21
1131II_DA140DT141:DA150DT151_JJ0.135-0.6532.8420.165-1.03922.539-1.337-0.2912.869-2.656-0.42222.564
1135II_DA144DT145:DA146DT147_JJ-2.268-0.8022.7890.6675.35530.221-2.3844.3932.56310.17-1.26630.688
13II_DC3DA4:DT287DG288_JJ-0.6420.8893.454-7.2667.9432.380.114-0.1883.62113.77212.60334.076
19II_DC9DC10:DG281DG282_JJ1.2220.6693.0873.0419.42234.267-0.259-1.5613.24615.592-5.03235.628
110II_DC10DA11:DT280DG281_JJ-1.9770.4343.165-7.1556.03830.835-0.3472.2253.54411.0413.08332.192
112II_DC12DC13:DG278DG279_JJ0.888-0.623.565-0.68112.74933.668-2.929-1.5423.11621.0931.12735.941
113II_DC13DT14:DA277DG278_JJ-0.7050.7513.0316.4798.95431.324-0.0972.2562.9315.973-11.55833.17
116II_DC16DA17:DT274DG275_JJ1.3462.9863.4795.741-13.68347.9654.488-1.1872.718-16.381-6.87350.078
122II_DC22DT23:DA268DG269_JJ0.23-0.363.334.415.12830.42-1.6630.4263.2289.625-8.27731.145
125II_DC25DC26:DG265DG266_JJ0.213-0.2323.286-0.4997.50634.912-1.463-0.423.16712.3350.8235.689
126II_DC26DA27:DT264DG265_JJ-0.6552.4323.762-0.504-14.35846.944.0760.752.949-17.550.61648.971
141II_DC44DT45:DA247DG248_JJ-0.583-0.3383.493-1.2581.63332.681-0.90.8023.4912.8982.23332.745
144II_DC47DT48:DA244DG245_JJ1.3841.4723.1588.764-11.36138.7473.258-1.0642.869-16.453-12.69341.222
146II_DC49DC50:DG242DG243_JJ-0.0090.5983.157-1.1736.50837.0690.097-0.1353.21110.1381.82837.633
147II_DC50DA51:DT241DG242_JJ-0.0660.1253.23-1.74413.02326.937-2.455-0.2332.97226.0783.49329.917
150II_DC53DA54:DT238DG239_JJ0.3090.2353.5143.26315.29627.128-2.7680.1093.20529.685-6.33231.24
157II_DC60DA61:DT231DG232_JJ0.1690.5543.392-2.6384.08635.1110.283-0.6823.4116.7344.34735.436
163II_DC66DA67:DT225DG226_JJ-1.6662.023.392-5.323-8.39443.7463.4231.6953.144-11.0957.03644.807
166II_DC69DT70:DA222DG223_JJ0.151.3973.554-0.863-4.55438.6052.687-0.3373.37-6.8581.338.871
173II_DC76DA77:DT215DG216_JJ-1.2431.6263.4986.139-1.16843.0392.3132.2953.256-1.581-8.31643.469
176II_DC79DT80:DA212DG213_JJ1.3031.5723.3474.453-11.39937.333.676-1.4212.894-17.25-6.73939.216
181II_DC84DA85:DT207DG208_JJ-0.2150.3283.564-4.1048.6933.095-0.945-0.3453.53614.877.02234.425
185II_DC88DC89:DG203DG204_JJ0.5480.9593.4111.923-7.01741.4212.082-0.563.235-9.829-2.69342.028
186II_DC89DT90:DA202DG203_JJ-0.8451.2013.382-2.515-9.55535.7053.1740.9943.023-15.2284.00837.004
198II_DC101DA102:DT190DG191_JJ1.3271.0723.8266.0843.01534.4051.229-1.0894.075.037-10.16435.048
1103II_DC107DC108:DG184DG185_JJ-1.2441.0983.225-2.104-4.29434.1752.5011.7793.136-7.2633.55934.498
1104II_DC108DA109:DT183DG184_JJ0.7361.7283.5523.882-13.1147.0033.118-0.5853.044-16.044-4.7548.842
1110II_DC114DA115:DT177DG178_JJ-0.185-0.0933.4666.40812.38133.077-2.0271.2713.14520.642-10.68435.819
1123II_DC131DG133:DC158DG160_JJ1.2440.9097.049-3.66614.66460.163-0.602-1.5817.00214.3843.59661.86
115II_DG15DC16:DG275DC276_JJ-0.4990.6812.951.120.52835.3751.0490.972.9430.868-1.84335.396
118II_DG18DA19:DT272DC273_JJ-0.7510.1813.56-1.976-3.48841.6940.6510.8253.565-4.8862.76841.877
128II_DG31DT32:DA260DC261_JJ-0.6550.4062.694-8.6015.10829.771-0.078-0.1842.89.60616.17531.37
130II_DG33DT34:DA258DC259_JJ-0.356-0.6023.2512.4442.25131.149-1.5321.1133.1654.178-4.53531.321
136II_DG39DG40:DC252DC253_JJ-0.4050.353.206-9.0176.08630.693-0.449-0.8693.20411.07116.40132.52
137II_DG40DA41:DT251DC252_JJ-1.2360.2363.3920.078.83437.618-0.7831.8793.35813.473-0.10638.605
143II_DG46DC47:DG245DC246_JJ-1.125-0.1163.457-7.1681.40134.938-0.4110.7033.6022.30311.77935.67
155II_DG58DG59:DC233DC234_JJ0.7510.953.5274.118-3.18140.6761.731-0.5883.502-4.554-5.89540.994
156II_DG59DC60:DG232DC233_JJ-0.2970.5083.293-4.7642.66837.8710.434-0.1563.3314.0857.29438.248
160II_DG63DT64:DA228DC229_JJ-0.315-0.4963.3861.1455.63931.054-1.980.7973.23410.42-2.11531.57
165II_DG68DC69:DG223DC224_JJ-1.161.1363.326-4.26-6.96841.1622.3191.1743.2-9.7955.98941.93
168II_DG71DA72:DT220DC221_JJ-0.704-0.0933.282-6.4455.15532.338-1.0390.1313.3049.07211.34233.347
175II_DG78DC79:DG213DC214_JJ-1.5041.1263.381-7.269-6.27739.1222.3831.3223.383-9.20610.6640.239
178II_DG81DA82:DT210DC211_JJ-0.86-0.1543.472.0348.74637.474-1.3731.5693.30413.379-3.11238.498
184II_DG87DC88:DG204DC205_JJ-1.9440.7893.578-14.341-14.83939.5122.6431.0283.552-20.35519.67344.385
191II_DG94DA95:DT197DC198_JJ-0.619-0.3793.185-3.6516.17530.584-1.8290.4773.10211.5086.80431.395
194II_DG97DG98:DC194DC195_JJ0.980.5183.5977.3278.40530.622-0.774-0.2683.73615.293-13.33132.543
195II_DG98DA99:DT193DC194_JJ-1.6331.3933.471-7.948-5.68540.362.6211.393.498-8.09711.3241.478
197II_DG100DC101:DG191DC192_JJ-1.5050.5713.278-2.057-3.7939.4541.2851.9763.282-5.5933.03639.68
1114II_DG120DG121:DC170DC171_JJ-0.5570.0053.328-0.4580.79443.018-0.0730.7143.3331.0820.62443.027
1115II_DG121DT122:DA169DC170_JJ-0.509-0.5443.1921.5770.60323.328-1.541.7753.1361.489-3.89323.389
1118II_DG124DA125:DT166DC167_JJ-0.5470.1743.4951.3660.1241.1950.2330.9343.4760.171-1.94141.216
1122II_DG130DC131:DG160DC161_JJ-0.7080.7623.174-13.093-4.16639.6281.5-0.3743.152-5.93318.64541.852
1124II_DG133DG134:DC157DC158_JJ-0.012-0.4253.615-2.1999.98632.403-2.472-0.3633.33517.3633.82333.937
1125II_DG134DT135:DA156DC157_JJ-0.4780.0223.0291.2851.55830.064-0.2521.1613.0032.999-2.47530.13
1127II_DG136DG137:DC154DC155_JJ-0.9280.5953.304-6.0529.50736.89-0.3430.6143.45214.619.30138.515
1128II_DG137DA138:DT153DC154_JJ-1.0570.4062.964-6.82-2.08934.9830.9440.8033.08-3.43111.20135.68
1134II_DG143DA144:DT147DC148_JJ-0.2770.0352.915-4.9624.21542.41-0.328-0.0642.9195.7856.81142.884
12II_DT2DC3:DG288DA289_JJ1.1730.4593.0464.6584.36736.2710.156-1.2493.1996.948-7.41236.81
16II_DT6DA7:DT284DA285_JJ-0.202-0.0743.4890.9081.55636.27-0.350.4593.4772.498-1.45836.314
18II_DT8DC9:DG282DA283_JJ0.0260.0283.025-1.125-1.53938.2390.222-0.173.019-2.3481.71638.285
114II_DT14DG15:DC276DA277_JJ0.3262.433.6395.499-6.26840.9464.1120.1583.264-8.849-7.76341.751
120II_DT20DT21:DA270DA271_JJ-0.076-0.1753.28-1.4640.61439.775-0.329-0.0583.2780.9022.15139.805
121II_DT21DC22:DG269DA270_JJ-0.0460.0873.27-7.1372.26342.598-0.104-0.6383.2363.0879.73443.221
123II_DT23DA24:DT267DA268_JJ-0.6670.9653.4491.8414.24739.4430.8941.2113.4976.266-2.71739.703
129II_DT32DG33:DC259DA260_JJ0.2720.0963.068-8.6428.5933.143-1.032-1.6472.84814.46414.55235.253
131II_DT34DA35:DT257DA258_JJ-0.086-0.263.9710.156-2.27940.86-0.0761.3943.851-3.202-14.26942.11
133II_DT36DT37:DA255DA256_JJ0.2170.2623.4223.612-4.45334.3311.1470.2123.367-7.479-6.06734.793
134II_DT37DT38:DA254DA255_JJ-0.2860.7333.223.6910.40139.0921.0440.8573.1880.598-5.50139.261
135II_DT38DG39:DC253DA254_JJ1.012.4443.383-3.285-0.4839.4583.665-1.8833.263-0.7094.85439.592
142II_DT45DG46:DC246DA247_JJ0.8751.7953.44811.699-1.18642.1872.5340.0383.509-1.61-15.88643.723
145II_DT48DC49:DG243DA244_JJ-0.2240.5793.251-1.5125.72336.6330.1370.1483.3079.0332.38637.092
149II_DT52DC53:DG239DA240_JJ0.464-0.2423.3212.9995.70227.023-1.899-0.2343.23411.987-6.30527.766
159II_DT62DG63:DC229DA230_JJ0.7110.7663.443-2.0082.21732.9780.951-1.6043.4373.8953.52933.11
161II_DT64DT65:DA227DA228_JJ0.142-0.4053.1031.893.90632.043-1.3790.0613.0377.036-3.40532.328
162II_DT65DC66:DG226DA227_JJ1.5010.0813.2916.59510.48337.364-1.191-1.4073.39915.84-9.96539.293
167II_DT70DG71:DC221DA222_JJ0.5810.7583.299-1.4625.67632.4910.347-1.2763.35110.0422.58733.001
171II_DT74DT75:DA217DA218_JJ0.327-0.5223.4011.2543.72533.888-1.5-0.3523.3366.364-2.14334.109
172II_DT75DC76:DG216DA217_JJ0.098-0.2133.2941.345.36332.898-1.2650.0533.2229.387-2.34533.347
177II_DT80DG81:DC211DA212_JJ-0.2390.5413.377-8.6212.39437.7160.509-0.7463.3763.64113.1138.725
183II_DT86DG87:DC205DA206_JJ0.4910.7143.7368.1658.51333.65-0.3040.6093.81214.175-13.59535.601
187II_DT90DT91:DA201DA202_JJ0.0020.193.542-3.284.33636.183-0.346-0.4933.5276.9335.24436.576
188II_DT91DT92:DA200DA201_JJ0.5060.2393.127-0.9336.42830.827-0.713-1.13.09611.9261.73131.488
189II_DT92DT93:DA199DA200_JJ-0.0590.393.090.73314.69530.054-1.6990.2212.95526.438-1.31833.387
190II_DT93DG94:DC198DA199_JJ0.4660.4183.524-1.09217.2926.324-2.858-1.093.17333.7172.12931.429
193II_DT96DG97:DC195DA196_JJ-0.2750.5923.32.2060.46538.7680.8340.6853.2870.699-3.3238.831
1100II_DT104DT105:DA187DA188_JJ-0.313-0.5933.1850.4050.81431.466-1.2410.6513.1651.501-0.74731.478
1101II_DT105DT106:DA186DA187_JJ0.232-0.6733.3734.0774.58935.609-1.7490.2153.277.436-6.60636.118
1102II_DT106DC107:DG185DA186_JJ1.4730.3283.70110.3172.06537.4850.192-0.7143.9663.139-15.6838.883
1108II_DT112DA113:DT179DA180_JJ-0.245-0.3113.188-10.8697.87734.992-1.5-1.0182.99512.54417.30937.403
1112II_DT118DT119:DA172DA173_JJ-0.4461.073.4681.119-12.81446.0572.3650.6433.072-16.014-1.39847.725
1113II_DT119DG120:DC171DA172_JJ0.3381.1982.916-10.743-2.55438.0352.031-1.5952.646-3.82116.07439.548
1116II_DT122DA123:DT168DA169_JJ0.4250.3873.418-6.0069.33336.679-0.642-1.4423.30814.439.28638.266
1121II_DT127DC128:DG163DA164_JJ0.2660.073.2121.2892.03533.78-0.202-0.2533.2183.496-2.21433.863
1126II_DT135DG136:DC155DA156_JJ1.1970.1213.1549.39615.75236.056-1.644-0.6523.14823.659-14.11240.315
1130II_DT139DA140:DT151DA152_JJ-0.2440.4223.289-3.867.51842.264-0.182-0.0553.32210.3025.28943.063
1132II_DT141DT142:DA149DA150_JJ0.4780.6552.9090.2328.15437.0850.058-0.7082.98512.634-0.3637.941
1133II_DT142DG143:DC148DA149_JJ-1.127-0.1063.036-8.43215.39730.308-2.440.6392.86526.8114.68334.922

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.